Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015925

Physical Location & Seq

Genomic Coordinates Forward (+)

43045627 .. 43054795

Gene Structure 9169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCGACAAGCTTCGCAACCGCATCAACGACCGTCATAGGCCTCGGAAGCTCGCTCTCGTCCAAGAGGACATGCCTCTCTTCAGACTTTGTGAAGCCTGTTATGGTTAGGAGCCCTTTGAGGCAAGCAAAAGCTTCTGGAGGAAGGTTCACCTGCATGAGCTTCCAGAGTGATTGGCTGAGGAGGGATCTGAATGTGATCGGGTTCGGGTTGATCGGATGGTTGGTGCCATCGAGCGTTCCGGCGATCGACGGCAAGAGTTTGACCGGGCTCTTCTTTGAGAGCATTGGAGCCGAGCTCGCTCACTTCCCCACACCTCCAGCTCTCACTTCCCAGTTCTGGTTGTGGTTGATCTGCTGGCACTTGGGGCTTTTCATCACCCTTACTTTTGGGCAGATTGGCTTCAAGGGAAGGACTGACAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009521 GO:0009522 GO:0009536 GO:0009579 GO:0009765 GO:0009767 GO:0009768 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0034357 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.46

Weight (kDa)

9.57

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaO_TMD	PF22832	55 - 140	5.1e-42	PsaO transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08380
fragaria_vesca	FvH4_3g25770
malus_domestica	MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica	Prupe.6G137400_v2.0.a1
pyrus_communis	pycom03g10460 pycom11g14230
rosa_chinensis	RchiOBHm_Chr5g0046981
rosa_laevigata	RLG00000034456
rosa_multiflora	Rmu_sc0005544.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034440
rosa_rugosa	Rorug05G0233100
rosa_samantha	Rh5BG321400 Rh5CG347500
rosa_wichuraiana	Rw5G029190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	161
Acc36I	ACCTGC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	226
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	406
AluBI	AGCT	6 cut(s)	12, 51, 134, 162, 298, 323
AluI	AGCT	6 cut(s)	12, 51, 134, 162, 298, 323
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	142, 370
BanI	GGYRCC	1 cut(s)	226
BanII	GRGCYC	3 cut(s)	116, 273, 300
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	179
BccI	CCATC	2 cut(s)	213, 238
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	268
BmiI	GGNNCC	3 cut(s)	113, 228, 292
BmrFI	CCNGG	1 cut(s)	268
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	328
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
BpmI	CTGGAG	2 cut(s)	159, 303
Bpu10I	CCTNAGC	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	196
Bsh1285I	CGRYCG	2 cut(s)	33, 249
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	226
BsiEI	CGRYCG	2 cut(s)	33, 249
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	242, 267
BslI	CCNNNNNNNGG	1 cut(s)	339
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	3 cut(s)	116, 273, 300
Bsp143I	GATC	5 cut(s)	187, 198, 213, 246, 351
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	113, 228, 292
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	195
BspQI	GCTCTTC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	5 cut(s)	187, 198, 213, 246, 351
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	2 cut(s)	85, 278
BstC8I	GCNNGC	4 cut(s)	53, 126, 300, 359
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	5 cut(s)	190, 201, 216, 249, 354
BstMBI	GATC	5 cut(s)	187, 198, 213, 246, 351
BstMCI	CGRYCG	2 cut(s)	33, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 299, 367
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	4 cut(s)	53, 126, 300, 359
CviAII	CATG	2 cut(s)	72, 157
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	5 cut(s)	189, 200, 215, 248, 353
DpnII	GATC	5 cut(s)	187, 198, 213, 246, 351
Eam1104I	CTCTTC	2 cut(s)	85, 278
EarI	CTCTTC	2 cut(s)	85, 278
Ecl136II	GAGCTC	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	42
Eco24I	GRGCYC	3 cut(s)	116, 273, 300
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	298
EcoT38I	GRGCYC	3 cut(s)	116, 273, 300
FaeI	CATG	2 cut(s)	75, 160
FaiI	YATR	4 cut(s)	38, 73, 104, 158
FatI	CATG	2 cut(s)	71, 156
FokI	GGATG	1 cut(s)	231
FriOI	GRGCYC	3 cut(s)	116, 273, 300
GsuI	CTGGAG	2 cut(s)	159, 303
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	242, 267
Hin1II	CATG	2 cut(s)	75, 160
HindIII	AAGCTT	2 cut(s)	10, 132
HpaII	CCGG	2 cut(s)	242, 267
HphI	GGTGA	2 cut(s)	142, 370
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	4 cut(s)	47, 85, 192, 218
Hpy188III	TCNNGA	2 cut(s)	138, 166
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	138, 405
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 299, 367
HpyF3I	CTNAG	1 cut(s)	179
Hsp92II	CATG	2 cut(s)	75, 160
Kzo9I	GATC	5 cut(s)	187, 198, 213, 246, 351
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	2 cut(s)	111, 290
LweI	GCATC	1 cut(s)	32
MalI	GATC	5 cut(s)	189, 200, 215, 248, 353
MboI	GATC	5 cut(s)	187, 198, 213, 246, 351
MboII	GAAGA	2 cut(s)	72, 265
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	3 cut(s)	116, 273, 300
MnlI	CCTC	8 cut(s)	53, 60, 86, 114, 134, 174, 177, 327
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	2 cut(s)	242, 267
MspR9I	CCNGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	48, 299, 367
NciI	CCSGG	1 cut(s)	268
NdeII	GATC	5 cut(s)	187, 198, 213, 246, 351
NlaIII	CATG	2 cut(s)	75, 160
NlaIV	GGNNCC	3 cut(s)	113, 228, 292
NmeAIII	GCCGAG	1 cut(s)	319
NspI	RCATGY	1 cut(s)	75
PaqCI	CACCTGC	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	42
PciSI	GCTCTTC	1 cut(s)	278
Ple19I	CGATCG	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	113, 228, 292
PsuI	RGATCY	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	278
Sau3AI	GATC	5 cut(s)	187, 198, 213, 246, 351
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	3 cut(s)	116, 273, 300
SetI	ASST	9 cut(s)	14, 53, 136, 149, 155, 164, 300, 319, 325
SfaNI	GCATC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	300
StuI	AGGCCT	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	233, 249
TspDTI	ATGAA	1 cut(s)	364
XceI	RCATGY	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.