pycom03g10460

photosystem I subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015925
Physical Location & Seq
Forward (+)
9631796 .. 9634673
2878 bp
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UTR
Exon/CDS
Intron
pycom03g10460.1

Sequence Viewer

Length: 435 bp
ATGGCAGCAAGCATGGCGACCGCATCAACCGTGATGGGGCTGGGTAGTTCCTCCCTCTCACCAAACAGGACATGCCTTTCTTCAGGCTTTGTGAAGCCTATTGTGGTTGGAAACCCTCTGAGGCAAGTTAGGGCTTCTGGAGGAAGGTTCACATGTAGCTTTCAGAGGGATTGGCTGCGGAGAGATCTGAATGTGATTGGGTTTGGGTTGATAGGATGGCTGGCTCCCTCGAGCATACCGTTAATCGACGGTAAGAGTTTGACGGGGCTCTTCTTTGAGAGCATTGGTGCTGAACTCGCTCACTTCCCCTCACCTCCTGCTCTCACTTCTCAGTTTTGGTTGTGGCTGATAACATGGCACTTGGGGCTTTTCATCGCCCTTACCTTTGGGCAGATTGGATTCAAGGGGAGGACTGAAGATTACTTTGATAAATGA

Protein Analysis

145

Amino Acids

15.69

Weight (kDa)

9.58

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaO_TMD PF22832 54 - 142 5.8e-43 PsaO transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08380
fragaria_vesca FvH4_3g25770
malus_domestica MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica Prupe.6G137400_v2.0.a1
pyrus_communis pycom03g10460 pycom11g14230
rosa_chinensis RchiOBHm_Chr5g0046981
rosa_laevigata RLG00000034456
rosa_multiflora Rmu_sc0005544.1_g000002
rosa_roxburghii Rroxscaffold_1G00034440
rosa_rugosa Rorug05G0233100
rosa_samantha Rh5BG321400 Rh5CG347500
rosa_wichuraiana Rw5G029190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 21, 178
AcuI CTGAAG 2 cut(s) 66, 435
AfiI CCNNNNNNNGG 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 1 cut(s) 403
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 5, 175
AsuHPI GGTGA 2 cut(s) 51, 303
AvaI CYCGRG 1 cut(s) 229
BanII GRGCYC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 17, 162
BccI CCATC 2 cut(s) 28, 210
BglII AGATCT 1 cut(s) 184
BisI GCNGC 2 cut(s) 6, 176
BlsI GCNGC 2 cut(s) 7, 177
BmeT110I CYCGRG 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 110, 344
BseXI GCAGC 2 cut(s) 17, 162
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 21, 178
BspCNI CTCAG 2 cut(s) 111, 343
BspLI GGNNCC 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 275
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 31, 240, 251
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 2 cut(s) 10, 222
BstDEI CTNAG 2 cut(s) 119, 330
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 14, 296, 364
BstNSI RCATGY 2 cut(s) 75, 156
BstV1I GCAGC 2 cut(s) 17, 162
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtgZI GCGATG 1 cut(s) 358
BtsCI GGATG 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 10, 222
CviAII CATG 4 cut(s) 13, 72, 153, 354
DdeI CTNAG 2 cut(s) 119, 330
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 270
Eco57I CTGAAG 2 cut(s) 66, 435
Eco88I CYCGRG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 4 cut(s) 16, 75, 156, 357
FaiI YATR 5 cut(s) 14, 73, 154, 236, 355
FatI CATG 4 cut(s) 12, 71, 152, 353
Fnu4HI GCNGC 2 cut(s) 6, 176
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 6, 176
GluI GCNGC 2 cut(s) 6, 176
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 159
Hin1II CATG 4 cut(s) 16, 75, 156, 357
HinfI GANTC 1 cut(s) 399
HphI GGTGA 2 cut(s) 51, 303
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 3 cut(s) 120, 165, 189
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 3 cut(s) 31, 240, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 296, 364
HpyF3I CTNAG 2 cut(s) 119, 330
Hsp92II CATG 4 cut(s) 16, 75, 156, 357
Kzo9I GATC 1 cut(s) 184
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 26, 52, 69, 123, 206, 330
Lsp1109I GCAGC 2 cut(s) 17, 162
LweI GCATC 1 cut(s) 32
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 3 cut(s) 72, 262, 428
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 88
MseI TTAA 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 14, 296, 364
NdeII GATC 1 cut(s) 184
NlaIII CATG 4 cut(s) 16, 75, 156, 357
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 2 cut(s) 75, 156
PaeR7I CTCGAG 1 cut(s) 229
PciI ACATGT 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 1 cut(s) 399
PkrI GCNGC 2 cut(s) 7, 177
PscI ACATGT 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 225
PspXI VCTCGAGB 1 cut(s) 229
PsuI RGATCY 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 2 cut(s) 6, 176
Sau3AI GATC 1 cut(s) 184
SduI GDGCHC 1 cut(s) 270
SetI ASST 4 cut(s) 149, 161, 316, 386
SfaNI GCATC 1 cut(s) 32
Sfr274I CTCGAG 1 cut(s) 229
SlaI CTCGAG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SsiI CCGC 2 cut(s) 21, 178
TaaI ACNGT 3 cut(s) 31, 240, 251
TaqI TCGA 2 cut(s) 230, 246
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseI GCWGC 2 cut(s) 5, 175
TspDTI ATGAA 1 cut(s) 361
XceI RCATGY 2 cut(s) 75, 156
XhoI CTCGAG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.