Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015925

Physical Location & Seq

Genomic Coordinates Forward (+)

18619813 .. 18621488

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGACAAGCTTCGCAACCGCTTCCACCGTCGTTGGCCTCGGAAGCTCACTCTCAAAGACGGCATGCCTCTCTTCTGACTTTGTGAAGCCAGTCATGGTTAGGAGCCCGCTGAGGCAAGCACAAGCTTCTCGAAGAAAGTTCACCTGCATGAGCTTCCAGAGTGATTGGCTGAGGAGGGATCTGAATGTGATCGGGTTCGGGTTGATCGGATGGTTGGTGCCATCCAGCGTTCCGGCGATCGACGGCAAGAGTTTGACCGGGCTCTTCTTTGACAGCATTGGAACCGAGCTTGCTCACTTCCCCACACCTCCAGCTCTCACCTCCCAGTTCTGGTTGTGGTTGATCTGCTGGCACTTGGGGCTCTTCATCACCCTTACCTTTGGGCAGATCGGTTTCAAGGGAAGGACTGACAAGTACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009521 GO:0009522 GO:0009536 GO:0009579 GO:0009765 GO:0009767 GO:0009768 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0032991 GO:0034357 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko00195 map00195

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

15.56

Weight (kDa)

9.73

Isoelectric Point (pI)

66.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsaO_TMD	PF22832	53 - 141	2.4e-43	PsaO transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08380
fragaria_vesca	FvH4_3g25770
malus_domestica	MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica	Prupe.6G137400_v2.0.a1
pyrus_communis	pycom03g10460 pycom11g14230
rosa_chinensis	RchiOBHm_Chr5g0046981
rosa_laevigata	RLG00000034456
rosa_multiflora	Rmu_sc0005544.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034440
rosa_rugosa	Rorug05G0233100
rosa_samantha	Rh5BG321400 Rh5CG347500
rosa_wichuraiana	Rw5G029190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	2 cut(s)	21, 110
AclWI	GGATC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	400
AluBI	AGCT	6 cut(s)	12, 48, 128, 156, 292, 317
AluI	AGCT	6 cut(s)	12, 48, 128, 156, 292, 317
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	136, 313, 364
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	3 cut(s)	110, 267, 366
BbvCI	CCTCAGC	2 cut(s)	113, 173
BccI	CCATC	2 cut(s)	207, 232
BceAI	ACGGC	2 cut(s)	78, 262
BcnI	CCSGG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	155
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	262
BmiI	GGNNCC	3 cut(s)	107, 222, 286
BmrFI	CCNGG	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	322
BmuI	ACTGGG	1 cut(s)	322
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	2 cut(s)	113, 173
BpuMI	CCSGG	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse1I	ACTGG	2 cut(s)	92, 328
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	2 cut(s)	218, 224
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	104, 164
BseNI	ACTGG	2 cut(s)	92, 328
BseRI	GAGGAG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	236, 261
BslI	CCNNNNNNNGG	1 cut(s)	333
BsnI	GGCC	1 cut(s)	39
Bsp1286I	GDGCHC	3 cut(s)	110, 267, 366
Bsp143I	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
BspACI	CCGC	2 cut(s)	21, 110
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	105, 165
BspLI	GGNNCC	3 cut(s)	107, 222, 286
BspMI	ACCTGC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	189
BspQI	GCTCTTC	2 cut(s)	272, 371
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	92, 328
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	3 cut(s)	79, 272, 371
BstC8I	GCNNGC	5 cut(s)	67, 110, 120, 294, 353
BstDEI	CTNAG	2 cut(s)	113, 173
BstF5I	GGATG	2 cut(s)	218, 224
BstKTI	GATC	6 cut(s)	184, 195, 210, 243, 348, 393
BstMBI	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 361
BstNSI	RCATGY	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	218, 224
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	5 cut(s)	67, 110, 120, 294, 353
Csp6I	GTAC	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	16, 51
CviAII	CATG	3 cut(s)	66, 97, 151
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	2 cut(s)	113, 173
DpnI	GATC	6 cut(s)	183, 194, 209, 242, 347, 392
DpnII	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
Eam1104I	CTCTTC	3 cut(s)	79, 272, 371
EarI	CTCTTC	3 cut(s)	79, 272, 371
Eco24I	GRGCYC	3 cut(s)	110, 267, 366
EcoT38I	GRGCYC	3 cut(s)	110, 267, 366
FaeI	CATG	3 cut(s)	69, 100, 154
FaiI	YATR	3 cut(s)	67, 98, 152
FatI	CATG	3 cut(s)	65, 96, 150
FauI	CCCGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	211, 225
FriOI	GRGCYC	3 cut(s)	110, 267, 366
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	2 cut(s)	236, 261
Hin1II	CATG	3 cut(s)	69, 100, 154
HindIII	AAGCTT	2 cut(s)	10, 126
HpaII	CCGG	2 cut(s)	236, 261
HphI	GGTGA	3 cut(s)	136, 313, 364
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	4 cut(s)	44, 79, 186, 212
Hpy188III	TCNNGA	2 cut(s)	132, 160
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	2 cut(s)	35, 248
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 361
HpyF3I	CTNAG	2 cut(s)	113, 173
Hsp92II	CATG	3 cut(s)	69, 100, 154
Kzo9I	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
LguI	GCTCTTC	2 cut(s)	272, 371
LmnI	GCTCC	1 cut(s)	105
MalI	GATC	6 cut(s)	183, 194, 209, 242, 347, 392
MboI	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
MboII	GAAGA	4 cut(s)	66, 147, 259, 358
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	3 cut(s)	110, 267, 366
MnlI	CCTC	7 cut(s)	50, 80, 108, 168, 171, 321, 334
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	112
MspI	CCGG	2 cut(s)	236, 261
MspR9I	CCNGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	45, 361
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
NlaIII	CATG	3 cut(s)	69, 100, 154
NlaIV	GGNNCC	3 cut(s)	107, 222, 286
NspI	RCATGY	1 cut(s)	69
PaeI	GCATGC	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	155
PciSI	GCTCTTC	2 cut(s)	272, 371
Ple19I	CGATCG	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	107, 222, 286
PsuI	RGATCY	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	149
SapI	GCTCTTC	2 cut(s)	272, 371
Sau3AI	GATC	6 cut(s)	181, 192, 207, 240, 345, 390
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	3 cut(s)	110, 267, 366
SmiMI	CAYNNNNRTG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	69
SsiI	CCGC	2 cut(s)	21, 110
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	133, 243
TatI	WGTACW	1 cut(s)	417
TspDTI	ATGAA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	69
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.