MD11G1169900.v1.1

photosystem I subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015925
Physical Location & Seq
Forward (+)
18250073 .. 18253023
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1169900.v1.1.491

Sequence Viewer

Length: 432 bp
ATGGCAGCAACCATGGCGACCGCATCAACCGTGATGGGGCTGGGCAGTTCCTCCCTCTCACCAAGCAGGACATGCCTCTCTTCAGGCTTTGTGAAGCCTATTGTGGTTGGCAACCCTCTGAGGCAAGATAGGGCTTCTGGAGGAAGGTTCACATGCTTTCAGAGAGATTGGCTGCGGAGGGATCTGAATGTGATTGGGTTTGGGTTGATCGGATGGTTGGCTCCGTCGAGCATACCATTAATCGGAGGTAAGAGTTTGACTGGGCTCTTCTTTGAGAGCATTGGTGCTGAGCTCGCTCACTTCCCCTCACCTCCTGCTCTCACTTCTCAATTTTGGTTGTGGCTGATAACATGGCACCTGGGGCTTTTCATCACCCTTACCTTTGGGCAGATTGGCTTCAAGGGGAGGACTGAAGATTACTTTGAAAAATGA

Protein Analysis

144

Amino Acids

15.59

Weight (kDa)

9.58

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaO_TMD PF22832 53 - 141 3.8e-43 PsaO transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015925)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08380
fragaria_vesca FvH4_3g25770
malus_domestica MD03G1150500.v1.1 MD11G1169900.v1.1
prunus_persica Prupe.6G137400_v2.0.a1
pyrus_communis pycom03g10460 pycom11g14230
rosa_chinensis RchiOBHm_Chr5g0046981
rosa_laevigata RLG00000034456
rosa_multiflora Rmu_sc0005544.1_g000002
rosa_roxburghii Rroxscaffold_1G00034440
rosa_rugosa Rorug05G0233100
rosa_samantha Rh5BG321400 Rh5CG347500
rosa_wichuraiana Rw5G029190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 354
AciI CCGC 2 cut(s) 21, 175
AclWI GGATC 1 cut(s) 189
AcuI CTGAAG 2 cut(s) 66, 432
AfiI CCNNNNNNNGG 2 cut(s) 36, 242
AgsI TTSAA 2 cut(s) 400, 425
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw21I GWGCWC 1 cut(s) 294
AlwI GGATC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 5, 172
AseI ATTAAT 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 51, 300, 364
BanI GGYRCC 1 cut(s) 354
BanII GRGCYC 2 cut(s) 267, 294
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 17, 159
BccI CCATC 2 cut(s) 28, 207
BciT130I CCWGG 1 cut(s) 359
BisI GCNGC 2 cut(s) 6, 173
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 2 cut(s) 7, 174
Bme1390I CCNGG 1 cut(s) 359
BmiI GGNNCC 2 cut(s) 222, 356
BmrFI CCNGG 1 cut(s) 359
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 12, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 242
Bse1I ACTGG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 12, 358
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 36, 242
BseMII CTCAG 2 cut(s) 110, 279
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 17, 159
BseYI CCCAGC 1 cut(s) 40
Bsh1285I CGRYCG 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 354
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 294
BslI CCNNNNNNNGG 2 cut(s) 36, 242
Bsp1286I GDGCHC 2 cut(s) 267, 294
Bsp143I GATC 2 cut(s) 181, 207
Bsp1720I GCTNAGC 1 cut(s) 288
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 21, 175
BspCNI CTCAG 2 cut(s) 111, 280
BspLI GGNNCC 2 cut(s) 222, 356
BspPI GGATC 1 cut(s) 189
BspQI GCTCTTC 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 12, 358
BssMI GATC 2 cut(s) 181, 207
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 85, 272
BstAPI GCANNNNNTGC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 119, 288
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 218
BstKTI GATC 2 cut(s) 184, 210
BstMBI GATC 2 cut(s) 181, 207
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 4 cut(s) 14, 72, 293, 361
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 2 cut(s) 75, 156
BstSCI CCNGG 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 17, 159
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 294
CviAII CATG 4 cut(s) 13, 72, 153, 351
DdeI CTNAG 2 cut(s) 119, 288
DpnI GATC 2 cut(s) 183, 209
DpnII GATC 2 cut(s) 181, 207
Eam1104I CTCTTC 2 cut(s) 85, 272
EarI CTCTTC 2 cut(s) 85, 272
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 2 cut(s) 267, 294
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 2 cut(s) 66, 432
EcoICRI GAGCTC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 2 cut(s) 267, 294
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 16, 75, 156, 354
FaiI YATR 5 cut(s) 14, 73, 154, 233, 352
FatI CATG 4 cut(s) 12, 71, 152, 350
Fnu4HI GCNGC 2 cut(s) 6, 173
FokI GGATG 1 cut(s) 225
FriOI GRGCYC 2 cut(s) 267, 294
Fsp4HI GCNGC 2 cut(s) 6, 173
GluI GCNGC 2 cut(s) 6, 173
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 159
Hin1II CATG 4 cut(s) 16, 75, 156, 354
HphI GGTGA 3 cut(s) 51, 300, 364
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 5 cut(s) 120, 162, 186, 212, 245
Hpy188III TCNNGA 1 cut(s) 138
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 72, 293, 361
HpyF3I CTNAG 2 cut(s) 119, 288
Hsp92II CATG 4 cut(s) 16, 75, 156, 354
Kzo9I GATC 2 cut(s) 181, 207
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 26, 52, 69, 123, 246, 327, 344, 371
Lsp1109I GCAGC 2 cut(s) 17, 159
LweI GCATC 1 cut(s) 32
MalI GATC 2 cut(s) 183, 209
MboI GATC 2 cut(s) 181, 207
MboII GAAGA 3 cut(s) 72, 259, 425
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 267, 294
MluCI AATT 1 cut(s) 329
MseI TTAA 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 4 cut(s) 14, 72, 293, 361
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 181, 207
NlaIII CATG 4 cut(s) 16, 75, 156, 354
NlaIV GGNNCC 2 cut(s) 222, 356
NspI RCATGY 2 cut(s) 75, 156
PciSI GCTCTTC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 7, 174
PshBI ATTAAT 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 222, 356
PsuI RGATCY 1 cut(s) 181
SacI GAGCTC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 6, 173
Sau3AI GATC 2 cut(s) 181, 207
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 2 cut(s) 267, 294
SetI ASST 6 cut(s) 149, 250, 294, 313, 360, 383
SfaNI GCATC 1 cut(s) 32
Sse9I AATT 1 cut(s) 329
SsiI CCGC 2 cut(s) 21, 175
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 329
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseI GCWGC 2 cut(s) 5, 172
TspDTI ATGAA 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 213
VspI ATTAAT 1 cut(s) 239
XceI RCATGY 2 cut(s) 75, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.