AT1G08470

Strictosidine synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011049
Physical Location & Seq
Reverse (-)
2682058 .. 2684171
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08470.1

Sequence Viewer

Length: 1173 bp
ATGGCCATGAGCATACTCGCGAAGATCTTTCTCGTCTTTGCCATCTATTGCGCTATCGATCCCTTCAGTCACAGCTCCATTTCCAAGTTCCCGGATTTCAAAACTTACAAGATTGACATGCCTCCGTTATCGTCACTTCCAAAGGAGAGAGACCGCCAGAATCTGTTGCAGAATTCAGAGATCAGGTTTCTTAACGAGGTTCAAGGTCCCGAGAGCATTGCTTTCGATCCGCAAGGTCGTGGTCCTTATACCGGAGTCGCCGACGGTCGAATTCTCTTTTGGAATGGCACTCGTTGGACAGATTTCGCATATACTTCGAACAATCGGTCAGAGCTATGTGATCCTAAGCCATCGCTTTTGGATTACTTAAAGGATGAAGATATCTGTGGTCGGCCTTTAGGTCTTCGATTCGACAAGAAAAATGGGGATTTGTACATTGCAGATGCGTATTTGGGGATAATGAAAGTTGGTCCGGAAGGAGGTTTAGCAACTTCTGTTACAAACGAGGCTGATGGTGTGCCTTTGAGATTTACCAATGATCTTGACATTGATGATGAAGGCAATGTTTACTTTACTGATAGCAGCTCTTTCTTCCAACGAAGGAAATTTATGCTTTTGATTGTCTCGGGGGAAGACAGTGGGAGGGTGTTGAAATACAATCCAAAAACAAAGGAGACTACCACTCTCGTGAGAAATCTCCAGTTTCCTAACGGATTATCCCTCGGCAAAGACGGCTCCTTTTTCATCTTTTGTGAAGGATCTATTGGAAGATTACGGAAATACTGGTTGAAAGGGGAGAAAGCTGGAACGTCAGAAGTGGTAGCTCTATTACATGGGTTCCCAGACAACATCCGCACAAACAAAGATGGAGATTTCTGGGTGGCGGTGCACTGCCACAGAAACATATTCACACACTTGATGGCGCATTACCCGAGGGTGAGGAAGTTCTTTCTGAAGCTGCCGATATCAGTGAAGTTTCAGTACTTGCTGCAGGTAGGTGGTTGGCCTCATGCTGTAGCTGTGAAGTACAGTGAAGAAGGGAAAGTGCTAAAGGTGTTGGAAGATAGTAAAGGGAAAGTGGTGAAGGCAGTGAGTGAAGTGGAGGAGAAAGATGGGAAGCTTTGGATGGGAAGTGTATTGATGTCCTTCATTGCCGTATATGACTTGCCTTAG

Protein Analysis

390

Amino Acids

44.04

Weight (kDa)

8.11

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SSL_N PF20067 56 - 93 2.7e-06 Strictosidine synthase-like, N-terminal
SGL PF08450 132 - 299 8.3e-12 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 179 - 266 1.9e-29 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica MD03G1159900.v1.1
prunus_persica Prupe.6G148100_v2.0.a1
pyrus_communis pycom03g11250
rosa_chinensis RchiOBHm_Chr5g0049151
rosa_laevigata RLG00000034594
rosa_multiflora Rmu_sc0001677.1_g000020
rosa_roxburghii Rroxscaffold_1G00032580
rosa_rugosa Rorug05G0244400
rosa_samantha Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana Rw5G030480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 982
AccII CGCG 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 4 cut(s) 154, 230, 853, 884
AclWI GGATC 4 cut(s) 53, 221, 335, 766
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 172, 270, 605
AcuI CTGAAG 2 cut(s) 49, 974
AfaI GTAC 3 cut(s) 434, 983, 1028
AfiI CCNNNNNNNGG 2 cut(s) 251, 479
AgsI TTSAA 4 cut(s) 100, 203, 652, 790
AjuI GAANNNNNNNTTGG 4 cut(s) 262, 294, 747, 779
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 8 cut(s) 75, 334, 585, 803, 824, 958, 1019, 1120
AluI AGCT 8 cut(s) 75, 334, 585, 803, 824, 958, 1019, 1120
Alw21I GWGCWC 1 cut(s) 891
Alw26I GTCTC 3 cut(s) 144, 628, 668
Alw44I GTGCAC 1 cut(s) 887
AlwI GGATC 4 cut(s) 53, 221, 335, 766
AlwNI CAGNNNCTG 1 cut(s) 163
Ama87I CYCGRG 3 cut(s) 209, 625, 931
Aor13HI TCCGGA 1 cut(s) 472
AoxI GGCC 3 cut(s) 3, 392, 1004
ApaLI GTGCAC 1 cut(s) 887
ApeKI GCWGC 3 cut(s) 582, 958, 988
ApoI RAATTY 3 cut(s) 172, 270, 605
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 2 cut(s) 53, 925
AspS9I GGNCC 3 cut(s) 206, 242, 470
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 949, 1093
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 3 cut(s) 209, 625, 931
AvaII GGWCC 3 cut(s) 206, 242, 470
BaeGI GKGCMC 1 cut(s) 891
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 965, 997
BauI CACGAG 1 cut(s) 686
BbsI GAAGAC 2 cut(s) 395, 639
Bbv12I GWGCWC 1 cut(s) 891
BbvI GCAGC 3 cut(s) 594, 945, 975
BccI CCATC 7 cut(s) 50, 358, 506, 860, 913, 1106, 1120
BceAI ACGGC 2 cut(s) 748, 1139
BcgI CGANNNNNNTGC 6 cut(s) 200, 205, 234, 239, 297, 331
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 3 cut(s) 144, 628, 668
BfmI CTRYAG 2 cut(s) 989, 1014
BfuAI ACCTGC 1 cut(s) 982
BglII AGATCT 1 cut(s) 24
BisI GCNGC 3 cut(s) 583, 959, 989
BlsI GCNGC 3 cut(s) 584, 960, 990
BmcAI AGTACT 1 cut(s) 983
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 3 cut(s) 206, 242, 470
BmeT110I CYCGRG 3 cut(s) 209, 625, 931
BmgT120I GGNCC 3 cut(s) 206, 242, 470
BmiI GGNNCC 3 cut(s) 208, 736, 839
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 2 cut(s) 395, 639
BpmI CTGGAG 1 cut(s) 683
Bpu10I CCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 721, 932
BsaWI WCCGGW 2 cut(s) 251, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 479
Bse1I ACTGG 2 cut(s) 700, 788
Bse3DI GCAATG 4 cut(s) 216, 435, 568, 1149
BseAI TCCGGA 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 721, 932
BseGI GGATG 3 cut(s) 379, 849, 1131
BseLI CCNNNNNNNGG 2 cut(s) 251, 479
BseMI GCAATG 4 cut(s) 216, 435, 568, 1149
BseNI ACTGG 2 cut(s) 700, 788
BseRI GAGGAG 1 cut(s) 1118
BseSI GKGCMC 1 cut(s) 891
BseXI GCAGC 3 cut(s) 594, 945, 975
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 5, 394, 1006
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 891
BsiHKCI CYCGRG 3 cut(s) 209, 625, 931
BsiSI CCGG 3 cut(s) 92, 252, 473
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 251, 479
BsmAI GTCTC 3 cut(s) 144, 628, 668
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 3 cut(s) 5, 394, 1006
Bso31I GGTCTC 1 cut(s) 144
BsoBI CYCGRG 3 cut(s) 209, 625, 931
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 891
Bsp13I TCCGGA 1 cut(s) 472
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
Bsp68I TCGCGA 1 cut(s) 20
BspACI CCGC 4 cut(s) 154, 230, 853, 884
BspANI GGCC 3 cut(s) 5, 394, 1006
BspDI ATCGAT 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 472
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 3 cut(s) 208, 736, 839
BspMAI CTGCAG 1 cut(s) 993
BspMI ACCTGC 1 cut(s) 982
BspPI GGATC 4 cut(s) 53, 221, 335, 766
BspT104I TTCGAA 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 4 cut(s) 216, 435, 568, 1149
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 2 cut(s) 700, 788
BssECI CCNNGG 2 cut(s) 721, 932
BssMI GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
BssSI CACGAG 1 cut(s) 686
Bst2BI CACGAG 1 cut(s) 686
Bst4CI ACNGT 3 cut(s) 266, 638, 1031
BstAUI TGTACA 1 cut(s) 432
BstBI TTCGAA 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 345, 1170
BstF5I GGATG 3 cut(s) 379, 849, 1131
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 2 cut(s) 53, 925
BstKTI GATC 7 cut(s) 27, 61, 183, 229, 343, 541, 761
BstMAI GTCTC 3 cut(s) 144, 628, 668
BstMBI GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 732
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 2 cut(s) 989, 1014
BstSLI GKGCMC 1 cut(s) 891
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 3 cut(s) 594, 945, 975
BstV2I GAAGAC 2 cut(s) 395, 639
BstX2I RGATCY 2 cut(s) 24, 758
BstYI RGATCY 2 cut(s) 24, 758
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 3 cut(s) 5, 394, 1006
BsuTUI ATCGAT 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 379, 849, 1131
BtsI GCAGTG 2 cut(s) 889, 1095
BtsIMutI CAGTG 5 cut(s) 643, 889, 975, 1036, 1095
BtuMI TCGCGA 1 cut(s) 20
BveI ACCTGC 1 cut(s) 982
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 2 cut(s) 53, 925
Cfr13I GGNCC 3 cut(s) 206, 242, 470
ClaI ATCGAT 1 cut(s) 57
Csp6I GTAC 3 cut(s) 433, 982, 1027
CviAII CATG 4 cut(s) 7, 118, 833, 1010
CviQI GTAC 3 cut(s) 433, 982, 1027
DdeI CTNAG 2 cut(s) 345, 1170
DpnI GATC 7 cut(s) 26, 60, 182, 228, 342, 540, 760
DpnII GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
EaeI YGGCCR 1 cut(s) 3
Eco31I GGTCTC 1 cut(s) 144
Eco32I GATATC 2 cut(s) 382, 966
Eco47I GGWCC 3 cut(s) 206, 242, 470
Eco57I CTGAAG 2 cut(s) 49, 974
Eco88I CYCGRG 3 cut(s) 209, 625, 931
EcoO109I RGGNCCY 1 cut(s) 206
EcoRI GAATTC 2 cut(s) 172, 270
EcoRV GATATC 2 cut(s) 382, 966
FaeI CATG 4 cut(s) 10, 121, 836, 1013
FaqI GGGAC 1 cut(s) 192
FatI CATG 4 cut(s) 6, 117, 832, 1009
Fnu4HI GCNGC 3 cut(s) 583, 959, 989
FokI GGATG 3 cut(s) 386, 836, 1138
Fsp4HI GCNGC 3 cut(s) 583, 959, 989
GlaI GCGC 2 cut(s) 52, 924
GluI GCNGC 3 cut(s) 583, 959, 989
GsuI CTGGAG 1 cut(s) 683
HaeIII GGCC 3 cut(s) 5, 394, 1006
HapII CCGG 3 cut(s) 92, 252, 473
HhaI GCGC 2 cut(s) 53, 925
Hin1II CATG 4 cut(s) 10, 121, 836, 1013
Hin6I GCGC 2 cut(s) 51, 923
HinP1I GCGC 2 cut(s) 51, 923
HindIII AAGCTT 1 cut(s) 1118
HinfI GANTC 3 cut(s) 160, 255, 408
HpaII CCGG 3 cut(s) 92, 252, 473
HphI GGTGA 2 cut(s) 949, 1093
Hpy166II GTNNAC 2 cut(s) 568, 889
Hpy188I TCNGA 4 cut(s) 178, 331, 814, 954
Hpy188III TCNNGA 5 cut(s) 19, 209, 473, 542, 688
Hpy8I GTNNAC 2 cut(s) 568, 889
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 8 cut(s) 73, 470, 551, 594, 749, 1031, 1078, 1156
HpyCH4III ACNGT 3 cut(s) 266, 638, 1031
HpyCH4IV ACGT 1 cut(s) 809
HpyCH4V TGCA 4 cut(s) 169, 440, 889, 991
HpyF10VI GCNNNNNNNGC 1 cut(s) 732
HpyF3I CTNAG 2 cut(s) 345, 1170
HpySE526I ACGT 1 cut(s) 809
Hsp92II CATG 4 cut(s) 10, 121, 836, 1013
HspAI GCGC 2 cut(s) 51, 923
Kpn2I TCCGGA 1 cut(s) 472
Kzo9I GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
LmnI GCTCC 2 cut(s) 80, 740
Lsp1109I GCAGC 3 cut(s) 594, 945, 975
LweI GCATC 1 cut(s) 433
MaeII ACGT 1 cut(s) 809
MaeIII GTNAC 3 cut(s) 68, 132, 496
MalI GATC 7 cut(s) 26, 60, 182, 228, 342, 540, 760
MboI GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
MboII GAAGA 8 cut(s) 34, 389, 395, 583, 644, 780, 1046, 1073
MflI RGATCY 2 cut(s) 24, 758
MhlI GDGCHC 1 cut(s) 891
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 172, 270, 605
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 3 cut(s) 275, 619, 1038
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 472
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 192, 368
MslI CAYNNNNRTG 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 92, 252, 473
MspR9I CCNGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 732
NciI CCSGG 1 cut(s) 92
NdeII GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
NlaIII CATG 4 cut(s) 10, 121, 836, 1013
NlaIV GGNNCC 3 cut(s) 208, 736, 839
NmeAIII GCCGAG 1 cut(s) 702
NmuCI GTSAC 2 cut(s) 68, 132
NruI TCGCGA 1 cut(s) 20
NspI RCATGY 1 cut(s) 121
NspV TTCGAA 1 cut(s) 317
OliI CACNNNNGTG 1 cut(s) 686
PfeI GAWTC 2 cut(s) 160, 408
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 3 cut(s) 584, 960, 990
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
PspN4I GGNNCC 3 cut(s) 208, 736, 839
PspPI GGNCC 3 cut(s) 206, 242, 470
PspPPI RGGWCCY 1 cut(s) 206
PstI CTGCAG 1 cut(s) 993
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 24, 758
RruI TCGCGA 1 cut(s) 20
RsaI GTAC 3 cut(s) 434, 983, 1028
RsaNI GTAC 3 cut(s) 433, 982, 1027
RseI CAYNNNNRTG 1 cut(s) 686
SaqAI TTAA 2 cut(s) 192, 368
SatI GCNGC 3 cut(s) 583, 959, 989
Sau3AI GATC 7 cut(s) 24, 58, 180, 226, 340, 538, 758
Sau96I GGNCC 3 cut(s) 206, 242, 470
ScaI AGTACT 1 cut(s) 983
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 891
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 2 cut(s) 989, 1014
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 3 cut(s) 206, 242, 470
SmiMI CAYNNNNRTG 1 cut(s) 686
Sse9I AATT 3 cut(s) 172, 270, 605
SsiI CCGC 4 cut(s) 154, 230, 853, 884
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 3 cut(s) 266, 638, 1031
TaiI ACGT 1 cut(s) 812
TaqI TCGA 6 cut(s) 57, 225, 268, 317, 406, 411
TaqII GACCGA 1 cut(s) 315
TasI AATT 3 cut(s) 172, 270, 605
TatI WGTACW 3 cut(s) 432, 981, 1026
TfiI GAWTC 2 cut(s) 160, 408
Tru1I TTAA 2 cut(s) 192, 368
Tru9I TTAA 2 cut(s) 192, 368
TscAI CASTG 5 cut(s) 643, 896, 975, 1036, 1095
TseFI GTSAC 2 cut(s) 68, 132
TseI GCWGC 3 cut(s) 582, 958, 988
Tsp45I GTSAC 2 cut(s) 68, 132
TspDTI ATGAA 5 cut(s) 390, 476, 570, 733, 1138
TspGWI ACGGA 3 cut(s) 114, 726, 790
TspRI CASTG 5 cut(s) 643, 896, 975, 1036, 1095
VneI GTGCAC 1 cut(s) 887
VpaK11BI GGWCC 3 cut(s) 206, 242, 470
XapI RAATTY 3 cut(s) 172, 270, 605
XceI RCATGY 1 cut(s) 121
ZrmI AGTACT 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.