Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011049

Physical Location & Seq

Genomic Coordinates Forward (+)

19880295 .. 19885474

Gene Structure 5180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26730.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAACCCAGCAGACTATTTGCAGGACTCTTCCTGCTGTTGGCTCTCTACTGTGGCTTAGACCCTTTTAAGCACAGCGCAATCTCCGACTTCCCAGACTTTGTTTCCCACGAAATCGACTTGCCCAGTTTGTCCTCGGTTCCTAAAGAGAGAGACACCCAGAATTTGCTTCAGAAATCGGAGATTAAGTTCCTGAACCAAGTTCAAGGCCCTGAGAGCGTCGCGTTTGATCCACAAGGACGTGGACCATATGCTGGTGTTGCGGATGGGAGAGTCTTGTTCTGGAATGGCCAGGCTTGGACTGATTTTGCCTATACATCGTCTCACAGGTCAGAGATATGTGATCCAAAACCATCAGCTATGAGTTACTTGCCAAATGAGCACATCTGTGGAAGGCCCTTGGGCCTCCGTTTTGACAAGAAAACAGGAGATTTGTACATTGCGGATGCATACTTTGGGCTCTTGAAAGTGGGGCCAGAAGGTGGTTTGGCAACTTCACTTACAACTGAGGCAGAAGGGGAGCCATTGAGGTTTACTAACGATCTTGACATTGATGAAGAAGGCAACATTTATTTTACTGATAGTAGCACCAAGTACCAGAGAAGGAACTTCCTGCAGTTAGTTTTCTCTGCAGATGATTCTGGCAGGGTTCTAAAGTACAACCCAACCACCAAGGAAACAACTGTTCTCGAAAGGAATCTCCAATTCCCAAATGGTCTGTCCCTGAGCAAAGATGGTTCCTTCTTTGTTTTTTGTGAAGGAGCTAAGGGGAGATTACGCAAGTATTGGTTGAAAGGTGAAAAAGCAGGAACTTCAGAAGTGTTCGCTGTGCTGTCTGGATTTCCTGACAATGTCAGAACTAATAATAATGGTGAATTTTGGGTAGCACTCCACTGTCGCAGGTCCATGTACACATATTTTTGTGCCTTATTCCCAAAAATAAGAAAAGTGATACTCAAGCTTCCCATTTCAGCTAAGATTCAGTTCCTGCTTCACATTGGGGGCTGGCCTCATGGAATTGTTGTCAAGTACAGCCCAGAGGGTAAGCTTTTGCAGATTTTGGAAGACAGTACAGGAAAGGTTGTTAAAGCTATTAGTGAAGTGGAAGAAAAGGATGGAAAACTATGGATGGGAAGTGTTTTGATGCCCTTCATTGCTGTCTACGACCTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

392

Amino Acids

43.77

Weight (kDa)

6.67

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	133 - 294	7.1e-12	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	180 - 267	1.9e-30	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca	FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica	MD03G1159900.v1.1
prunus_persica	Prupe.6G148100_v2.0.a1
pyrus_communis	pycom03g11250
rosa_chinensis	RchiOBHm_Chr5g0049151
rosa_laevigata	RLG00000034594
rosa_multiflora	Rmu_sc0001677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032580
rosa_rugosa	Rorug05G0244400
rosa_samantha	Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana	Rw5G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	891
AccB7I	CCANNNNNTGG	2 cut(s)	254, 482
AccI	GTMKAC	1 cut(s)	1161
AccII	CGCG	1 cut(s)	224
AciI	CCGC	2 cut(s)	263, 443
AclWI	GGATC	2 cut(s)	224, 338
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	163, 875
AcuI	CTGAAG	2 cut(s)	155, 798
AfaI	GTAC	6 cut(s)	437, 596, 659, 911, 1031, 1072
AfiI	CCNNNNNNNGG	3 cut(s)	40, 254, 482
AgsI	TTSAA	3 cut(s)	206, 466, 793
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	291
AleI	CACNNNNGTG	1 cut(s)	387
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	6 cut(s)	359, 764, 961, 974, 1048, 1091
AluI	AGCT	6 cut(s)	359, 764, 961, 974, 1048, 1091
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	147, 327
AlwI	GGATC	2 cut(s)	224, 338
AlwNI	CAGNNNCTG	1 cut(s)	988
AoxI	GGCC	6 cut(s)	208, 289, 395, 403, 473, 1007
ApoI	RAATTY	2 cut(s)	163, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	6 cut(s)	209, 245, 396, 403, 473, 903
AsuHPI	GGTGA	2 cut(s)	809, 884
AvaII	GGWCC	2 cut(s)	245, 903
BalI	TGGCCA	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	1071
Bbv12I	GWGCWC	1 cut(s)	384
BccI	CCATC	5 cut(s)	260, 361, 728, 1109, 1123
BciT130I	CCWGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	147, 327
BfmI	CTRYAG	2 cut(s)	614, 630
BfuAI	ACCTGC	1 cut(s)	891
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	2 cut(s)	245, 903
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	6 cut(s)	209, 245, 396, 403, 473, 903
BmiI	GGNNCC	4 cut(s)	141, 474, 522, 739
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	436, 1134
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	1071
Bpu10I	CCTNAGC	2 cut(s)	725, 765
BpuEI	CTTGAG	1 cut(s)	941
BsaJI	CCNNGG	3 cut(s)	135, 399, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 254, 482
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	2 cut(s)	438, 1152
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	135, 399, 672
BseGI	GGATG	4 cut(s)	271, 451, 1120, 1134
BseLI	CCNNNNNNNGG	3 cut(s)	40, 254, 482
BseMI	GCAATG	2 cut(s)	438, 1152
BseMII	CTCAG	3 cut(s)	204, 498, 716
BseNI	ACTGG	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	6 cut(s)	210, 291, 397, 405, 475, 1009
BsiHKAI	GWGCWC	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	3 cut(s)	40, 254, 482
BsmAI	GTCTC	2 cut(s)	147, 327
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	706
BsnI	GGCC	6 cut(s)	210, 291, 397, 405, 475, 1009
Bsp1286I	GDGCHC	2 cut(s)	384, 462
Bsp1407I	TGTACA	2 cut(s)	435, 909
Bsp143I	GATC	3 cut(s)	229, 343, 541
BspACI	CCGC	2 cut(s)	263, 443
BspANI	GGCC	6 cut(s)	210, 291, 397, 405, 475, 1009
BspCNI	CTCAG	3 cut(s)	205, 499, 717
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	4 cut(s)	141, 474, 522, 739
BspMAI	CTGCAG	2 cut(s)	618, 634
BspMI	ACCTGC	1 cut(s)	891
BspPI	GGATC	2 cut(s)	224, 338
BsrDI	GCAATG	2 cut(s)	438, 1152
BsrGI	TGTACA	2 cut(s)	435, 909
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	135, 399, 672
BssMI	GATC	3 cut(s)	229, 343, 541
BssT1I	CCWWGG	2 cut(s)	399, 672
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	4 cut(s)	53, 685, 896, 1070
Bst6I	CTCTTC	1 cut(s)	35
BstAUI	TGTACA	2 cut(s)	435, 909
BstC8I	GCNNGC	1 cut(s)	1007
BstDEI	CTNAG	6 cut(s)	58, 213, 507, 725, 765, 975
BstF5I	GGATG	4 cut(s)	271, 451, 1120, 1134
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	3 cut(s)	232, 346, 544
BstMAI	GTCTC	2 cut(s)	147, 327
BstMBI	GATC	3 cut(s)	229, 343, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 260, 379
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	614, 630
BstUI	CGCG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	1071
BsuRI	GGCC	6 cut(s)	210, 291, 397, 405, 475, 1009
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	4 cut(s)	271, 451, 1120, 1134
BtsIMutI	CAGTG	1 cut(s)	892
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	1 cut(s)	1007
CaiI	CAGNNNCTG	1 cut(s)	988
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	6 cut(s)	209, 245, 396, 403, 473, 903
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	6 cut(s)	436, 595, 658, 910, 1030, 1071
CviAII	CATG	2 cut(s)	907, 1013
CviQI	GTAC	6 cut(s)	436, 595, 658, 910, 1030, 1071
DdeI	CTNAG	6 cut(s)	58, 213, 507, 725, 765, 975
DpnI	GATC	3 cut(s)	231, 345, 543
DpnII	GATC	3 cut(s)	229, 343, 541
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	399, 672
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	245, 903
Eco57I	CTGAAG	2 cut(s)	155, 798
EcoO109I	RGGNCCY	2 cut(s)	209, 396
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	399, 672
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	462
ErhI	CCWWGG	2 cut(s)	399, 672
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	2 cut(s)	910, 1016
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	2 cut(s)	906, 1012
FauNDI	CATATG	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	1161
FokI	GGATG	4 cut(s)	278, 458, 1127, 1141
FriOI	GRGCYC	1 cut(s)	462
GlaI	GCGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	210, 291, 397, 405, 475, 1009
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	910, 1016
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	2 cut(s)	959, 1046
HinfI	GANTC	5 cut(s)	27, 273, 638, 697, 979
HphI	GGTGA	2 cut(s)	809, 884
Hpy166II	GTNNAC	4 cut(s)	245, 534, 912, 1162
Hpy188I	TCNGA	6 cut(s)	88, 174, 181, 334, 817, 857
Hpy188III	TCNNGA	7 cut(s)	193, 283, 463, 545, 689, 837, 845
Hpy8I	GTNNAC	4 cut(s)	245, 534, 912, 1162
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	8 cut(s)	387, 473, 509, 554, 597, 751, 752, 1159
HpyCH4III	ACNGT	4 cut(s)	53, 685, 896, 1070
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	23, 449, 616, 632, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 260, 379
HpyF3I	CTNAG	6 cut(s)	58, 213, 507, 725, 765, 975
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	910, 1016
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	229, 343, 541
LmnI	GCTCC	2 cut(s)	520, 761
LweI	GCATC	2 cut(s)	436, 1134
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	231, 345, 543
MboI	GATC	3 cut(s)	229, 343, 541
MboII	GAAGA	4 cut(s)	22, 569, 1076, 1118
MhlI	GDGCHC	2 cut(s)	384, 462
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	4 cut(s)	163, 704, 875, 1017
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	2 cut(s)	21, 282
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	6 cut(s)	145, 416, 502, 522, 1020, 1033
Mox20I	TGGCCA	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	4 cut(s)	69, 186, 1086, 1174
MslI	CAYNNNNRTG	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	216, 260, 379
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	3 cut(s)	229, 343, 541
NlaIII	CATG	2 cut(s)	910, 1016
NlaIV	GGNNCC	4 cut(s)	141, 474, 522, 739
NsiI	ATGCAT	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	638, 697, 979
PflFI	GACNNNGTC	1 cut(s)	851
PflMI	CCANNNNNTGG	2 cut(s)	254, 482
PleI	GAGTC	2 cut(s)	21, 281
PpsI	GAGTC	2 cut(s)	21, 281
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	4 cut(s)	141, 474, 522, 739
PspPI	GGNCC	6 cut(s)	209, 245, 396, 403, 473, 903
PstI	CTGCAG	2 cut(s)	618, 634
PstNI	CAGNNNCTG	1 cut(s)	988
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	6 cut(s)	437, 596, 659, 911, 1031, 1072
RsaNI	GTAC	6 cut(s)	436, 595, 658, 910, 1030, 1071
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	69, 186, 1086, 1174
Sau3AI	GATC	3 cut(s)	229, 343, 541
Sau96I	GGNCC	6 cut(s)	209, 245, 396, 403, 473, 903
SchI	GAGTC	2 cut(s)	21, 282
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	384, 462
SfaNI	GCATC	2 cut(s)	436, 1134
SfcI	CTRYAG	2 cut(s)	614, 630
SinI	GGWCC	2 cut(s)	245, 903
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse9I	AATT	4 cut(s)	163, 704, 875, 1017
SsiI	CCGC	2 cut(s)	263, 443
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	2 cut(s)	399, 672
TaaI	ACNGT	4 cut(s)	53, 685, 896, 1070
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	117, 690
TasI	AATT	4 cut(s)	163, 704, 875, 1017
TatI	WGTACW	5 cut(s)	435, 657, 909, 1029, 1070
TfiI	GAWTC	3 cut(s)	638, 697, 979
Tru1I	TTAA	4 cut(s)	69, 186, 1086, 1174
Tru9I	TTAA	4 cut(s)	69, 186, 1086, 1174
TscAI	CASTG	1 cut(s)	899
TspDTI	ATGAA	3 cut(s)	17, 570, 1141
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	1 cut(s)	899
Tth111I	GACNNNGTC	1 cut(s)	851
Van91I	CCANNNNNTGG	2 cut(s)	254, 482
VpaK11BI	GGWCC	2 cut(s)	245, 903
XapI	RAATTY	2 cut(s)	163, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	1161
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.