Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011049

Physical Location & Seq

Genomic Coordinates Forward (+)

47248272 .. 47253105

Gene Structure 4834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG345000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCTTATTTGGGATACAGGTCAGAGATATGTGATCCAAAACCATCACCTATGAGTTACTTGCCAAATGAGCACATCTGTGGAAGGCCGTTGGGGCTCCGTTTTGACAAGAAAACAGGCGATTTGTACATTGCGGATGCATATTTTGGGCTGTTGAAGGTGGGGCCAGAAGGTGGTTTGGCAACTTCACTTACAACTGAGGCAGAAGGGGAGCCATTGAGGTTTACTAATGATCTTGACATTGATGAAGAAGGCAATGTTTATTTTACTGATAGTAGCACCAAGTACCAGAGGAGGAACTTCCTGCAGTTGGTTTTCTCTGCAGATGATTCTGGGAGAGTTCTAAAATACAACTCAACCACCAAGGAAACAACTGTTCTCGAAAGGAATCACCAATTTCCAAATGGTCTGTCTCTGAGCAAGGACGGTTCCTTCTTTGTTTTTTGTGAAGGAGCTAAGGGCAGCTTACGCAAGTATTGGTTGAAAGGTGAAAAAGCGGGAACTTCAGAAGTGTTTGCTGTGCTGCCTGGATTTCCTGACAATGTCAGAACTAATGATAATGGTGAATTTTGGGTAGCAGTCCACTGTCGCAGGTCCCTGTACACATATTTTTGTGCCTTATTCCCAAAATTAAGGAAAGTCATACTCAAGCTTCCCATTTCAGCTAAGATTCAGTTCCTGATTCACATTGGGGGCTGGCCTCATGCAGTAGTTGTCAAGTACAGCCCAGAGGGTAAGCTTTTGCAGATTTTGGAAGATAGTACGGGAAAGGTTGTTAAAGCTATCAGTGAAGTGGAAGAAAAAGATGGAAAACTATGGATGGGAAGTGTTTTGATGCCCTTCATTGCAGTCTATAACATAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

288

Amino Acids

32.29

Weight (kDa)

7.6

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	30 - 194	4.4e-12	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	77 - 164	4.7e-28	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca	FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica	MD03G1159900.v1.1
prunus_persica	Prupe.6G148100_v2.0.a1
pyrus_communis	pycom03g11250
rosa_chinensis	RchiOBHm_Chr5g0049151
rosa_laevigata	RLG00000034594
rosa_multiflora	Rmu_sc0001677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032580
rosa_rugosa	Rorug05G0244400
rosa_samantha	Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana	Rw5G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	582
AccB7I	CCANNNNNTGG	1 cut(s)	173
AciI	CCGC	2 cut(s)	134, 497
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	5 cut(s)	128, 287, 602, 722, 763
AfiI	CCNNNNNNNGG	2 cut(s)	173, 310
AgsI	TTSAA	2 cut(s)	157, 484
AjnI	CCWGG	1 cut(s)	526
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	7 cut(s)	455, 465, 652, 665, 739, 782, 863
AluI	AGCT	7 cut(s)	455, 465, 652, 665, 739, 782, 863
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	679
AoxI	GGCC	3 cut(s)	86, 164, 698
ApeKI	GCWGC	2 cut(s)	462, 523
ApoI	RAATTY	1 cut(s)	566
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspS9I	GGNCC	2 cut(s)	164, 594
AsuHPI	GGTGA	4 cut(s)	39, 383, 500, 575
AvaII	GGWCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	474, 510
BccI	CCATC	3 cut(s)	52, 800, 814
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	417
BfmI	CTRYAG	2 cut(s)	305, 321
BfuAI	ACCTGC	1 cut(s)	582
BfuI	GTATCC	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	463, 524
BlsI	GCNGC	2 cut(s)	464, 525
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	164, 594
BmiI	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	127, 825
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 310
Bse3DI	GCAATG	3 cut(s)	129, 262, 843
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	142, 825
BseLI	CCNNNNNNNGG	2 cut(s)	173, 310
BseMI	GCAATG	3 cut(s)	129, 262, 843
BseMII	CTCAG	2 cut(s)	189, 407
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	474, 510
BshFI	GGCC	3 cut(s)	88, 166, 700
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	173, 310
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	88, 166, 700
Bsp1286I	GDGCHC	2 cut(s)	75, 99
Bsp1407I	TGTACA	2 cut(s)	126, 600
Bsp143I	GATC	2 cut(s)	34, 232
BspACI	CCGC	2 cut(s)	134, 497
BspANI	GGCC	3 cut(s)	88, 166, 700
BspCNI	CTCAG	2 cut(s)	190, 408
BspLI	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
BspMAI	CTGCAG	2 cut(s)	309, 325
BspMI	ACCTGC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	29
BsrDI	GCAATG	3 cut(s)	129, 262, 843
BsrGI	TGTACA	2 cut(s)	126, 600
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	34, 232
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	376, 428, 587
BstAUI	TGTACA	2 cut(s)	126, 600
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	4 cut(s)	198, 416, 456, 666
BstF5I	GGATG	2 cut(s)	142, 825
BstKTI	GATC	2 cut(s)	37, 235
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	34, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 94, 468
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	2 cut(s)	305, 321
BstV1I	GCAGC	2 cut(s)	474, 510
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	88, 166, 700
BtsCI	GGATG	2 cut(s)	142, 825
BtsIMutI	CAGTG	2 cut(s)	583, 793
BveI	ACCTGC	1 cut(s)	582
Cac8I	GCNNGC	1 cut(s)	698
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	164, 594
Csp6I	GTAC	5 cut(s)	127, 286, 601, 721, 762
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	5 cut(s)	127, 286, 601, 721, 762
DdeI	CTNAG	4 cut(s)	198, 416, 456, 666
DpnI	GATC	2 cut(s)	36, 234
DpnII	GATC	2 cut(s)	34, 232
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	707
FaiI	YATR	9 cut(s)	31, 53, 142, 607, 644, 705, 817, 855, 860
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	1 cut(s)	703
FauI	CCCGC	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	463, 524
FokI	GGATG	2 cut(s)	149, 832
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	463, 524
GluI	GCNGC	2 cut(s)	463, 524
HaeIII	GGCC	3 cut(s)	88, 166, 700
Hin1II	CATG	1 cut(s)	707
HindIII	AAGCTT	2 cut(s)	650, 737
HinfI	GANTC	4 cut(s)	329, 388, 670, 682
HphI	GGTGA	4 cut(s)	39, 383, 500, 575
Hpy166II	GTNNAC	3 cut(s)	225, 583, 603
Hpy188I	TCNGA	4 cut(s)	25, 417, 508, 548
Hpy188III	TCNNGA	4 cut(s)	236, 380, 536, 679
Hpy8I	GTNNAC	3 cut(s)	225, 583, 603
HpyAV	CCTTC	8 cut(s)	78, 151, 164, 200, 245, 442, 443, 850
HpyCH4III	ACNGT	3 cut(s)	376, 428, 587
HpyCH4V	TGCA	6 cut(s)	140, 307, 323, 707, 745, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 94, 468
HpyF3I	CTNAG	4 cut(s)	198, 416, 456, 666
Hsp92II	CATG	1 cut(s)	707
Kzo9I	GATC	2 cut(s)	34, 232
LmnI	GCTCC	3 cut(s)	102, 211, 452
Lsp1109I	GCAGC	2 cut(s)	474, 510
LweI	GCATC	2 cut(s)	127, 825
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	36, 234
MboI	GATC	2 cut(s)	34, 232
MboII	GAAGA	3 cut(s)	260, 767, 809
MhlI	GDGCHC	2 cut(s)	75, 99
MluCI	AATT	3 cut(s)	395, 566, 629
MnlI	CCTC	6 cut(s)	193, 213, 285, 288, 711, 724
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	3 cut(s)	632, 777, 865
MslI	CAYNNNNRTG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	70, 94, 468
NdeII	GATC	2 cut(s)	34, 232
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
NsiI	ATGCAT	1 cut(s)	142
OliI	CACNNNNGTG	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	329, 388, 670, 682
PflFI	GACNNNGTC	1 cut(s)	542
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	464, 525
PpuMI	RGGWCCY	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
PspPI	GGNCC	2 cut(s)	164, 594
PspPPI	RGGWCCY	1 cut(s)	594
PstI	CTGCAG	2 cut(s)	309, 325
PstNI	CAGNNNCTG	1 cut(s)	679
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	5 cut(s)	128, 287, 602, 722, 763
RsaNI	GTAC	5 cut(s)	127, 286, 601, 721, 762
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	632, 777, 865
SatI	GCNGC	2 cut(s)	463, 524
Sau3AI	GATC	2 cut(s)	34, 232
Sau96I	GGNCC	2 cut(s)	164, 594
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	2 cut(s)	75, 99
SfaNI	GCATC	2 cut(s)	127, 825
SfcI	CTRYAG	2 cut(s)	305, 321
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	3 cut(s)	395, 566, 629
SsiI	CCGC	2 cut(s)	134, 497
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	376, 428, 587
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	395, 566, 629
TatI	WGTACW	3 cut(s)	126, 600, 720
TfiI	GAWTC	4 cut(s)	329, 388, 670, 682
Tru1I	TTAA	3 cut(s)	632, 777, 865
Tru9I	TTAA	3 cut(s)	632, 777, 865
TscAI	CASTG	2 cut(s)	590, 793
TseI	GCWGC	2 cut(s)	462, 523
TspDTI	ATGAA	2 cut(s)	261, 832
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	590, 793
Tth111I	GACNNNGTC	1 cut(s)	542
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.