Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011049

Physical Location & Seq

Genomic Coordinates Forward (+)

46483463 .. 46488296

Gene Structure 4834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG333600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCTTATTTGGGATACAGGTCAGAGATATGTGATCCAAAACCATCACCTATGAGTTACTTGCCAAATGAGCACATCTGTGGAAGGCCGTTGGGGCTCCGTTTTGACAAGAAAACAGGCGATTTGTACATTGCGGATGCATATTTTGGGCTGTTGAAGGTGGGGCCAGAAGGTGGTTTGGCAACTTCACTTACAACTGAGGCAGAAGGGGAGCCATTGAGGTTTACTAATGATCTTGACATTGATGAAGAAGGCAATGTTTATTTTACTGATAGTAGCACCAAGTACCAGAGGAGGAACTTCCTGCAGTTGGTTTTCTCTGCAGATGATTCTGGGAGAGTTCTAAAATACAACTCAACCACCAAGGAAACAACTGTTCTCGAAAGGAATCACCAATTTCCAAATGGTCTGTCTCTGAGCAAGGACGGTTCCTTCTTTGTTTTTTGTGAAGGAGCTAAGGGCAGCTTACGCAAGTATTGGTTGAAAGGTGAAAAAGCGGGAACTTCAGAAGTGTTTGCTGTGCTGCCTGGATTTCCTGACAATGTCAGAACTAATGATAATGGTGAATTTTGGGTAGCAGTCCACTGTCGCAGGTCCCTGTACACATATTTTTGTGCCTTATTCCCAAAATTAAGGAAAGTCATACTCAAGCTTCCCATTTCAGCTAAGATTCAGTTCCTGATTCACATTGGGGGCTGGCCTCATGCAGTAGTTGTCAAGTACAGCCCAGAGGGTAAGCTTTTGCAGATTTTGGAAGATAGTACGGGAAAGGTTGTTAAAGCTATCAGTGAAGTGGAAGAAAAAGATGGAAAACTATGGATGGGAAGTGTTTTGATGCCCTTCATTGCAGTCTATAACATAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

288

Amino Acids

32.29

Weight (kDa)

7.6

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	30 - 194	4.4e-12	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	77 - 164	4.7e-28	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca	FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica	MD03G1159900.v1.1
prunus_persica	Prupe.6G148100_v2.0.a1
pyrus_communis	pycom03g11250
rosa_chinensis	RchiOBHm_Chr5g0049151
rosa_laevigata	RLG00000034594
rosa_multiflora	Rmu_sc0001677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032580
rosa_rugosa	Rorug05G0244400
rosa_samantha	Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana	Rw5G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	582
AccB7I	CCANNNNNTGG	1 cut(s)	173
AciI	CCGC	2 cut(s)	134, 497
AclWI	GGATC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	5 cut(s)	128, 287, 602, 722, 763
AfiI	CCNNNNNNNGG	2 cut(s)	173, 310
AgsI	TTSAA	2 cut(s)	157, 484
AjnI	CCWGG	1 cut(s)	526
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	7 cut(s)	455, 465, 652, 665, 739, 782, 863
AluI	AGCT	7 cut(s)	455, 465, 652, 665, 739, 782, 863
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	679
AoxI	GGCC	3 cut(s)	86, 164, 698
ApeKI	GCWGC	2 cut(s)	462, 523
ApoI	RAATTY	1 cut(s)	566
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspS9I	GGNCC	2 cut(s)	164, 594
AsuHPI	GGTGA	4 cut(s)	39, 383, 500, 575
AvaII	GGWCC	1 cut(s)	594
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	474, 510
BccI	CCATC	3 cut(s)	52, 800, 814
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	417
BfmI	CTRYAG	2 cut(s)	305, 321
BfuAI	ACCTGC	1 cut(s)	582
BfuI	GTATCC	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	463, 524
BlsI	GCNGC	2 cut(s)	464, 525
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	164, 594
BmiI	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	127, 825
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 310
Bse3DI	GCAATG	3 cut(s)	129, 262, 843
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	142, 825
BseLI	CCNNNNNNNGG	2 cut(s)	173, 310
BseMI	GCAATG	3 cut(s)	129, 262, 843
BseMII	CTCAG	2 cut(s)	189, 407
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	474, 510
BshFI	GGCC	3 cut(s)	88, 166, 700
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	2 cut(s)	173, 310
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	88, 166, 700
Bsp1286I	GDGCHC	2 cut(s)	75, 99
Bsp1407I	TGTACA	2 cut(s)	126, 600
Bsp143I	GATC	2 cut(s)	34, 232
BspACI	CCGC	2 cut(s)	134, 497
BspANI	GGCC	3 cut(s)	88, 166, 700
BspCNI	CTCAG	2 cut(s)	190, 408
BspLI	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
BspMAI	CTGCAG	2 cut(s)	309, 325
BspMI	ACCTGC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	29
BsrDI	GCAATG	3 cut(s)	129, 262, 843
BsrGI	TGTACA	2 cut(s)	126, 600
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	2 cut(s)	34, 232
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	376, 428, 587
BstAUI	TGTACA	2 cut(s)	126, 600
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	4 cut(s)	198, 416, 456, 666
BstF5I	GGATG	2 cut(s)	142, 825
BstKTI	GATC	2 cut(s)	37, 235
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	34, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 94, 468
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	2 cut(s)	305, 321
BstV1I	GCAGC	2 cut(s)	474, 510
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	88, 166, 700
BtsCI	GGATG	2 cut(s)	142, 825
BtsIMutI	CAGTG	2 cut(s)	583, 793
BveI	ACCTGC	1 cut(s)	582
Cac8I	GCNNGC	1 cut(s)	698
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	164, 594
Csp6I	GTAC	5 cut(s)	127, 286, 601, 721, 762
CviAII	CATG	1 cut(s)	704
CviQI	GTAC	5 cut(s)	127, 286, 601, 721, 762
DdeI	CTNAG	4 cut(s)	198, 416, 456, 666
DpnI	GATC	2 cut(s)	36, 234
DpnII	GATC	2 cut(s)	34, 232
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	363
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	1 cut(s)	707
FaiI	YATR	9 cut(s)	31, 53, 142, 607, 644, 705, 817, 855, 860
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	1 cut(s)	580
FatI	CATG	1 cut(s)	703
FauI	CCCGC	1 cut(s)	490
Fnu4HI	GCNGC	2 cut(s)	463, 524
FokI	GGATG	2 cut(s)	149, 832
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	463, 524
GluI	GCNGC	2 cut(s)	463, 524
HaeIII	GGCC	3 cut(s)	88, 166, 700
Hin1II	CATG	1 cut(s)	707
HindIII	AAGCTT	2 cut(s)	650, 737
HinfI	GANTC	4 cut(s)	329, 388, 670, 682
HphI	GGTGA	4 cut(s)	39, 383, 500, 575
Hpy166II	GTNNAC	3 cut(s)	225, 583, 603
Hpy188I	TCNGA	4 cut(s)	25, 417, 508, 548
Hpy188III	TCNNGA	4 cut(s)	236, 380, 536, 679
Hpy8I	GTNNAC	3 cut(s)	225, 583, 603
HpyAV	CCTTC	8 cut(s)	78, 151, 164, 200, 245, 442, 443, 850
HpyCH4III	ACNGT	3 cut(s)	376, 428, 587
HpyCH4V	TGCA	6 cut(s)	140, 307, 323, 707, 745, 848
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 94, 468
HpyF3I	CTNAG	4 cut(s)	198, 416, 456, 666
Hsp92II	CATG	1 cut(s)	707
Kzo9I	GATC	2 cut(s)	34, 232
LmnI	GCTCC	3 cut(s)	102, 211, 452
Lsp1109I	GCAGC	2 cut(s)	474, 510
LweI	GCATC	2 cut(s)	127, 825
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	36, 234
MboI	GATC	2 cut(s)	34, 232
MboII	GAAGA	3 cut(s)	260, 767, 809
MhlI	GDGCHC	2 cut(s)	75, 99
MluCI	AATT	3 cut(s)	395, 566, 629
MnlI	CCTC	6 cut(s)	193, 213, 285, 288, 711, 724
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	3 cut(s)	632, 777, 865
MslI	CAYNNNNRTG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	3 cut(s)	70, 94, 468
NdeII	GATC	2 cut(s)	34, 232
NlaIII	CATG	1 cut(s)	707
NlaIV	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
NsiI	ATGCAT	1 cut(s)	142
OliI	CACNNNNGTG	1 cut(s)	78
PfeI	GAWTC	4 cut(s)	329, 388, 670, 682
PflFI	GACNNNGTC	1 cut(s)	542
PflMI	CCANNNNNTGG	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	464, 525
PpuMI	RGGWCCY	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	5 cut(s)	98, 165, 213, 430, 596
PspPI	GGNCC	2 cut(s)	164, 594
PspPPI	RGGWCCY	1 cut(s)	594
PstI	CTGCAG	2 cut(s)	309, 325
PstNI	CAGNNNCTG	1 cut(s)	679
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	5 cut(s)	128, 287, 602, 722, 763
RsaNI	GTAC	5 cut(s)	127, 286, 601, 721, 762
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	3 cut(s)	632, 777, 865
SatI	GCNGC	2 cut(s)	463, 524
Sau3AI	GATC	2 cut(s)	34, 232
Sau96I	GGNCC	2 cut(s)	164, 594
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	2 cut(s)	75, 99
SfaNI	GCATC	2 cut(s)	127, 825
SfcI	CTRYAG	2 cut(s)	305, 321
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	647
SmoI	CTYRAG	1 cut(s)	647
Sse9I	AATT	3 cut(s)	395, 566, 629
SsiI	CCGC	2 cut(s)	134, 497
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	376, 428, 587
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	395, 566, 629
TatI	WGTACW	3 cut(s)	126, 600, 720
TfiI	GAWTC	4 cut(s)	329, 388, 670, 682
Tru1I	TTAA	3 cut(s)	632, 777, 865
Tru9I	TTAA	3 cut(s)	632, 777, 865
TscAI	CASTG	2 cut(s)	590, 793
TseI	GCWGC	2 cut(s)	462, 523
TspDTI	ATGAA	2 cut(s)	261, 832
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	590, 793
Tth111I	GACNNNGTC	1 cut(s)	542
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	1 cut(s)	566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.