Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011049

Physical Location & Seq

Genomic Coordinates Forward (+)

45698752 .. 45702210

Gene Structure 3459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034594

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAACCCGGCAGAGTACTTGCAGGAGTGTTCCTGCTGTTGGCTGTCTACTGTGGAATAGACCCTTTTAAGCACAGCGCAATCTCTGACTTCCCGGACTTTGTATCCCACGAAATCGACATGCCCAGTTTGTCCTCGGTTCCTAAGGAGAGAGACGCCCAGAATTTGCTTCAGAAATCGGAGATTAAGTTCCTGAACCAAGTTCAAGGCCCTGAGAGCGTCGCTTTTGACCCACAAGGACGTGGACCATATACTGGTGTTGCCGACGGCAGAGTCTTGTTCTGGAACGGTCAGGCCTGGGTTGATTTTGCATACACTTCGCCTCATAGGTCAGAGATATGTGATCCAAAACCATCACCTATGAGTTACTTGCCAAATGAGCACATCTGTGGAAGGCCGTTGGGGCTCCGTTTTGACAAGAAAACAGGTGATTTGTACATAGCGGATGCATATTTTGGGCTGTTGAAGGTGGGGCCAGAAGGTGGTTTGGCAACTTCACTTACAACTGAGGCAGAAGGGGAGCCATTGAGGTTTACTAATGATCTTGACATTGATGAAGAAGGCAATGTTTATTTTACTGATAGTAGCACCAAGTACCAGAGGAGGAACTTCCTGCAGTTGGTTTTCTCTGCAGATGATTCTGGGAGGGTTCTAAAATACAACTCAACCACCAAGGAAACAACTGTTCTCGAAAGGAATCACCAATTTCCAAATGGTCTGTCTCTGAGCAAGGACGGTTACTTCATTGTTTTTTGTGAAGGATCTAAGGGCAGGTTACGCAAGTATTGGTTGAAAGGTGAAAAAGCGGGAACTTCAGAAGTGTTTGCTGTGCTGCCTGGATTTCCTGACAATGTCAGAACTAATGATAATGGTGAATTTTGGGTAGCAGTCCACTGCCGCAGGTCCCTGTACACGTATTTTTGTTCCTTATTCCCAAAAATAAGGAAAGTCATACTCAAGCTTCCCATTTCAGCTAAGATTCAGTTCCTGCTTCACATTGGGGGCTGGCCTCATGGAGTAGTTGTCAAGTACAGCCCGGAGGGTAAGCTTTTGCAGATTTTGGAAGATAGTACGGGAAAGGTTGTTAAAGCTATCAGTGAAGTGGAAGAAAAGGATGGAAAACTATGGATGGGAAGTGTTTTGATGCCCTTCATTGCAGTCTATAACATAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

392

Amino Acids

43.74

Weight (kDa)

6.72

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	58 - 94	1e-05	Strictosidine synthase-like, N-terminal
SGL	PF08450	133 - 297	6.3e-11	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	180 - 267	5.6e-28	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca	FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica	MD03G1159900.v1.1
prunus_persica	Prupe.6G148100_v2.0.a1
pyrus_communis	pycom03g11250
rosa_chinensis	RchiOBHm_Chr5g0049151
rosa_laevigata	RLG00000034594
rosa_multiflora	Rmu_sc0001677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032580
rosa_rugosa	Rorug05G0244400
rosa_samantha	Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana	Rw5G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc36I	ACCTGC	2 cut(s)	762, 891
AccB7I	CCANNNNNTGG	2 cut(s)	254, 482
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	3 cut(s)	443, 806, 898
AclWI	GGATC	2 cut(s)	338, 769
AcsI	RAATTY	2 cut(s)	163, 875
AcuI	CTGAAG	2 cut(s)	155, 798
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	6 cut(s)	18, 437, 596, 911, 1031, 1072
AfiI	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
AflIII	ACRYGT	1 cut(s)	912
AgsI	TTSAA	3 cut(s)	206, 466, 793
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	296, 835
AleI	CACNNNNGTG	1 cut(s)	387
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	961, 974, 1048, 1091, 1172
AluI	AGCT	5 cut(s)	961, 974, 1048, 1091, 1172
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	147, 726
AlwI	GGATC	2 cut(s)	338, 769
AlwNI	CAGNNNCTG	1 cut(s)	988
AoxI	GGCC	5 cut(s)	208, 294, 395, 473, 1007
ApeKI	GCWGC	1 cut(s)	832
ApoI	RAATTY	2 cut(s)	163, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	4 cut(s)	209, 245, 473, 903
AsuC2I	CCSGG	3 cut(s)	9, 95, 1037
AsuHPI	GGTGA	5 cut(s)	348, 440, 692, 809, 884
AvaII	GGWCC	2 cut(s)	245, 903
AxyI	CCTNAGG	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	819
BccI	CCATC	3 cut(s)	361, 1109, 1123
BceAI	ACGGC	2 cut(s)	283, 382
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	2 cut(s)	298, 837
BciVI	GTATCC	1 cut(s)	115
BcnI	CCSGG	3 cut(s)	9, 95, 1037
BcoDI	GTCTC	2 cut(s)	147, 726
BfmI	CTRYAG	2 cut(s)	614, 630
BfuAI	ACCTGC	2 cut(s)	762, 891
BfuI	GTATCC	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	833, 898
BlsI	GCNGC	2 cut(s)	834, 899
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	5 cut(s)	9, 95, 298, 837, 1037
Bme18I	GGWCC	2 cut(s)	245, 903
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	4 cut(s)	209, 245, 473, 903
BmiI	GGNNCC	5 cut(s)	141, 407, 474, 522, 905
BmrFI	CCNGG	5 cut(s)	9, 95, 298, 837, 1037
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	436, 1134
BmuI	ACTGGG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	3 cut(s)	9, 95, 1037
BsaAI	YACGTR	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	135, 297, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 203, 1008, 1038
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
Bse1I	ACTGG	2 cut(s)	126, 259
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	2 cut(s)	571, 1152
BseBI	CCWGG	2 cut(s)	298, 837
BseDI	CCNNGG	3 cut(s)	135, 297, 672
BseGI	GGATG	3 cut(s)	451, 1120, 1134
BseLI	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
BseMI	GCAATG	2 cut(s)	571, 1152
BseMII	CTCAG	3 cut(s)	204, 498, 716
BseNI	ACTGG	2 cut(s)	126, 259
BseRI	GAGGAG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	819
BshFI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	9, 95, 1037
BslFI	GGGAC	1 cut(s)	889
BslI	CCNNNNNNNGG	4 cut(s)	40, 254, 482, 619
BsmAI	GTCTC	2 cut(s)	147, 726
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	889
BsnI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
Bsp1286I	GDGCHC	2 cut(s)	384, 408
Bsp1407I	TGTACA	2 cut(s)	435, 909
Bsp143I	GATC	3 cut(s)	343, 541, 761
BspACI	CCGC	3 cut(s)	443, 806, 898
BspANI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
BspCNI	CTCAG	3 cut(s)	205, 499, 717
BspLI	GGNNCC	5 cut(s)	141, 407, 474, 522, 905
BspMAI	CTGCAG	2 cut(s)	618, 634
BspMI	ACCTGC	2 cut(s)	762, 891
BspPI	GGATC	2 cut(s)	338, 769
BsrDI	GCAATG	2 cut(s)	571, 1152
BsrGI	TGTACA	2 cut(s)	435, 909
BsrI	ACTGG	2 cut(s)	126, 259
BssECI	CCNNGG	3 cut(s)	135, 297, 672
BssMI	GATC	3 cut(s)	343, 541, 761
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	298, 837
Bst4CI	ACNGT	4 cut(s)	53, 290, 685, 737
BstACI	GRCGYC	1 cut(s)	156
BstAUI	TGTACA	2 cut(s)	435, 909
BstBAI	YACGTR	1 cut(s)	915
BstC8I	GCNNGC	1 cut(s)	1007
BstDEI	CTNAG	6 cut(s)	144, 213, 507, 725, 765, 975
BstF5I	GGATG	3 cut(s)	451, 1120, 1134
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	3 cut(s)	346, 544, 764
BstMAI	GTCTC	2 cut(s)	147, 726
BstMBI	GATC	3 cut(s)	343, 541, 761
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 379, 403, 777
BstNI	CCWGG	2 cut(s)	298, 837
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	5 cut(s)	7, 93, 296, 835, 1035
BstSFI	CTRYAG	2 cut(s)	614, 630
BstV1I	GCAGC	1 cut(s)	819
BstX2I	RGATCY	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	761
Bsu36I	CCTNAGG	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	5 cut(s)	210, 296, 397, 475, 1009
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	451, 1120, 1134
BtsI	GCAGTG	1 cut(s)	892
BtsIMutI	CAGTG	2 cut(s)	892, 1102
BveI	ACCTGC	2 cut(s)	762, 891
Cac8I	GCNNGC	1 cut(s)	1007
CaiI	CAGNNNCTG	1 cut(s)	988
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	209, 245, 473, 903
CseI	GACGC	2 cut(s)	164, 208
Csp6I	GTAC	6 cut(s)	17, 436, 595, 910, 1030, 1071
CviAII	CATG	2 cut(s)	121, 1013
CviQI	GTAC	6 cut(s)	17, 436, 595, 910, 1030, 1071
DdeI	CTNAG	6 cut(s)	144, 213, 507, 725, 765, 975
DpnI	GATC	3 cut(s)	345, 543, 763
DpnII	GATC	3 cut(s)	343, 541, 761
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	2 cut(s)	245, 903
Eco57I	CTGAAG	2 cut(s)	155, 798
Eco81I	CCTNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	209, 903
EcoRII	CCWGG	2 cut(s)	296, 835
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	2 cut(s)	124, 1016
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	2 cut(s)	120, 1012
FauI	CCCGC	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	833, 898
FokI	GGATG	3 cut(s)	458, 1127, 1141
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	2 cut(s)	833, 898
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	833, 898
HaeIII	GGCC	5 cut(s)	210, 296, 397, 475, 1009
HapII	CCGG	3 cut(s)	9, 95, 1037
HgaI	GACGC	2 cut(s)	164, 208
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	124, 1016
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HindIII	AAGCTT	2 cut(s)	959, 1046
HinfI	GANTC	4 cut(s)	273, 638, 697, 979
HpaII	CCGG	3 cut(s)	9, 95, 1037
HphI	GGTGA	5 cut(s)	348, 440, 692, 809, 884
Hpy166II	GTNNAC	5 cut(s)	49, 245, 534, 892, 912
Hpy188I	TCNGA	7 cut(s)	88, 174, 181, 334, 726, 817, 857
Hpy188III	TCNNGA	5 cut(s)	193, 283, 545, 689, 845
Hpy8I	GTNNAC	5 cut(s)	49, 245, 534, 892, 912
Hpy99I	CGWCG	2 cut(s)	224, 269
HpyAV	CCTTC	7 cut(s)	387, 460, 473, 509, 554, 752, 1159
HpyCH4III	ACNGT	4 cut(s)	53, 290, 685, 737
HpyCH4IV	ACGT	2 cut(s)	241, 914
HpyCH4V	TGCA	7 cut(s)	23, 311, 449, 616, 632, 1054, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 379, 403, 777
HpyF3I	CTNAG	6 cut(s)	144, 213, 507, 725, 765, 975
HpySE526I	ACGT	2 cut(s)	241, 914
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	124, 1016
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	3 cut(s)	343, 541, 761
LmnI	GCTCC	2 cut(s)	411, 520
Lsp1109I	GCAGC	1 cut(s)	819
LweI	GCATC	2 cut(s)	436, 1134
MaeII	ACGT	2 cut(s)	241, 914
MaeIII	GTNAC	3 cut(s)	365, 737, 774
MalI	GATC	3 cut(s)	345, 543, 763
MboI	GATC	3 cut(s)	343, 541, 761
MboII	GAAGA	3 cut(s)	569, 1076, 1118
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	2 cut(s)	384, 408
MluCI	AATT	3 cut(s)	163, 704, 875
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	9 cut(s)	145, 333, 502, 522, 594, 597, 639, 1020, 1033
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	4 cut(s)	69, 186, 1086, 1174
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	3 cut(s)	9, 95, 1037
MspR9I	CCNGG	5 cut(s)	9, 95, 298, 837, 1037
MvaI	CCWGG	2 cut(s)	298, 837
MwoI	GCNNNNNNNGC	4 cut(s)	216, 379, 403, 777
NciI	CCSGG	3 cut(s)	9, 95, 1037
NdeII	GATC	3 cut(s)	343, 541, 761
NlaIII	CATG	2 cut(s)	124, 1016
NlaIV	GGNNCC	5 cut(s)	141, 407, 474, 522, 905
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	387
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	638, 697, 979
PflFI	GACNNNGTC	1 cut(s)	851
PflMI	CCANNNNNTGG	2 cut(s)	254, 482
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	834, 899
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	915
PpuMI	RGGWCCY	1 cut(s)	903
Psp5II	RGGWCCY	1 cut(s)	903
Psp6I	CCWGG	2 cut(s)	296, 835
PspGI	CCWGG	2 cut(s)	296, 835
PspN4I	GGNNCC	5 cut(s)	141, 407, 474, 522, 905
PspPI	GGNCC	4 cut(s)	209, 245, 473, 903
PspPPI	RGGWCCY	1 cut(s)	903
PstI	CTGCAG	2 cut(s)	618, 634
PstNI	CAGNNNCTG	1 cut(s)	988
PsuI	RGATCY	1 cut(s)	761
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	6 cut(s)	18, 437, 596, 911, 1031, 1072
RsaNI	GTAC	6 cut(s)	17, 436, 595, 910, 1030, 1071
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	69, 186, 1086, 1174
SatI	GCNGC	2 cut(s)	833, 898
Sau3AI	GATC	3 cut(s)	343, 541, 761
Sau96I	GGNCC	4 cut(s)	209, 245, 473, 903
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	5 cut(s)	9, 95, 298, 837, 1037
SduI	GDGCHC	2 cut(s)	384, 408
SfaNI	GCATC	2 cut(s)	436, 1134
SfcI	CTRYAG	2 cut(s)	614, 630
SinI	GGWCC	2 cut(s)	245, 903
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse9I	AATT	3 cut(s)	163, 704, 875
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	443, 806, 898
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	5 cut(s)	7, 93, 296, 835, 1035
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	4 cut(s)	53, 290, 685, 737
TaiI	ACGT	2 cut(s)	244, 917
TaqI	TCGA	2 cut(s)	117, 690
TasI	AATT	3 cut(s)	163, 704, 875
TatI	WGTACW	4 cut(s)	16, 435, 909, 1029
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	3 cut(s)	638, 697, 979
Tru1I	TTAA	4 cut(s)	69, 186, 1086, 1174
Tru9I	TTAA	4 cut(s)	69, 186, 1086, 1174
TscAI	CASTG	2 cut(s)	899, 1102
TseI	GCWGC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	17, 570, 733, 1141
TspGWI	ACGGA	1 cut(s)	398
TspRI	CASTG	2 cut(s)	899, 1102
Tth111I	GACNNNGTC	1 cut(s)	851
Van91I	CCANNNNNTGG	2 cut(s)	254, 482
VpaK11BI	GGWCC	2 cut(s)	245, 903
XapI	RAATTY	2 cut(s)	163, 875
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.