Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011049

Physical Location & Seq

Genomic Coordinates Reverse (-)

46725549 .. 46729095

Gene Structure 3547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGGCAGATGAGTGATCTACCTACCCCTCTTGCCTGCTCTTCAAATACTCGGCTCATTTCCACAGAAACCAAACCACTACTCTCAACAACATCAGCGGCGATGAAACCCGGCAGAGTACTTGCAGGACTGTTCCTGCTGTTGGCTGTCTACTGTGGAATAGACCCTTTTAAGCACAGCGCAATCTCTGACTTCCCGGACTTTGTGTCCCACAAAATCGACATGCCCAGTTTGTCCTCGGTTCCTAAGGAGAGAGACACCCAGAATTTGCTTCAGAAATCGGAGATTAAGTTCCTGAACCAAGTTCAAGGCCCTGAGAGCGTCGCTTTTGACCCACAAGGACGTGGACCATATACTGGTGTTGCCGATGGCAGAGTCTTGCTCTGGAACGGTCAGGCCTGGGTTGATTTTGCATATACTTCGCCTCATAGGTCAGAGATATGTGATCCAAAACCATCACCTATGAGTTACTTGCCAAATGAGCACATCTGTGGAAGGCCGTTGGGGCTCCGTTTTGACAAGAAAACAGGCGATTTGTACATTGCAGATGCATATTTTGGGCTGTTGAAGGTGGGGCCAGAAGGTGGTTTGGCAACTTCACTTACAACTGAGGCTGAAGGGGAGCCATTGAGGTTTACTAATGACCTTGACATTGATGAAGAAGGCAATGTTTATTTTACTGATAGTAGCACCAAGTACCAGAGGAGGAACTTCCTGCAGTTGGTTTTCTCTGCAGATGATTCTGGGAGAGTTCTAAAATACAACTCAACCACCAAGGAAACAACTGTTCTCGAAAGGAATCACCAATTTCCAAATGGTCTGTCTCTGAGCAAGGACTGTTCCTTCTTTGTTTTTGTGAAGGAGCTAAGGGCAGGTTACGCAAGTATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

297

Amino Acids

32.87

Weight (kDa)

5.79

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	167 - 285	5.3e-06	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	214 - 287	2.6e-22	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca	FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica	MD03G1159900.v1.1
prunus_persica	Prupe.6G148100_v2.0.a1
pyrus_communis	pycom03g11250
rosa_chinensis	RchiOBHm_Chr5g0049151
rosa_laevigata	RLG00000034594
rosa_multiflora	Rmu_sc0001677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032580
rosa_rugosa	Rorug05G0244400
rosa_samantha	Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana	Rw5G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	863
AccB7I	CCANNNNNTGG	2 cut(s)	356, 584
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	2 cut(s)	257, 636
AfaI	GTAC	3 cut(s)	120, 539, 698
AfiI	CCNNNNNNNGG	4 cut(s)	142, 356, 584, 721
AgsI	TTSAA	3 cut(s)	45, 308, 568
AhdI	GACNNNNNGTC	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	398
AleI	CACNNNNGTG	1 cut(s)	489
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	1 cut(s)	865
AluI	AGCT	1 cut(s)	865
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	249, 828
AlwI	GGATC	1 cut(s)	440
AoxI	GGCC	4 cut(s)	310, 396, 497, 575
ApoI	RAATTY	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	311, 347, 575
AsuC2I	CCSGG	2 cut(s)	111, 197
AsuHPI	GGTGA	2 cut(s)	450, 794
AvaII	GGWCC	1 cut(s)	347
AxyI	CCTNAGG	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	486
BccI	CCATC	2 cut(s)	362, 463
BceAI	ACGGC	1 cut(s)	484
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	111, 197
BcoDI	GTCTC	2 cut(s)	249, 828
BfmI	CTRYAG	2 cut(s)	716, 732
BfuAI	ACCTGC	1 cut(s)	863
BglI	GCCNNNNNGGC	1 cut(s)	505
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	120
Bme1390I	CCNGG	3 cut(s)	111, 197, 400
Bme18I	GGWCC	1 cut(s)	347
BmeRI	GACNNNNNGTC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	344
BmgT120I	GGNCC	3 cut(s)	311, 347, 575
BmiI	GGNNCC	4 cut(s)	243, 509, 576, 624
BmrFI	CCNGG	3 cut(s)	111, 197, 400
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
Bpu10I	CCTNAGC	1 cut(s)	866
BpuMI	CCSGG	2 cut(s)	111, 197
BsaJI	CCNNGG	3 cut(s)	237, 399, 774
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 356, 584, 721
Bse1I	ACTGG	2 cut(s)	228, 361
Bse21I	CCTNAGG	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	540, 673
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	3 cut(s)	237, 399, 774
BseLI	CCNNNNNNNGG	4 cut(s)	142, 356, 584, 721
BseMI	GCAATG	2 cut(s)	540, 673
BseMII	CTCAG	3 cut(s)	306, 600, 818
BseNI	ACTGG	2 cut(s)	228, 361
BseRI	GAGGAG	1 cut(s)	718
BshFI	GGCC	4 cut(s)	312, 398, 499, 577
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	111, 197
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	142, 356, 584, 721
BsmAI	GTCTC	2 cut(s)	249, 828
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	312, 398, 499, 577
Bsp1286I	GDGCHC	2 cut(s)	486, 510
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	16, 445
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	4 cut(s)	312, 398, 499, 577
BspCNI	CTCAG	3 cut(s)	307, 601, 819
BspLI	GGNNCC	4 cut(s)	243, 509, 576, 624
BspMAI	CTGCAG	2 cut(s)	720, 736
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	1 cut(s)	440
BspQI	GCTCTTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	540, 673
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	228, 361
BssECI	CCNNGG	3 cut(s)	237, 399, 774
BssMI	GATC	2 cut(s)	16, 445
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	5 cut(s)	132, 155, 392, 787, 839
Bst6I	CTCTTC	1 cut(s)	46
BstAUI	TGTACA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	5 cut(s)	246, 315, 609, 827, 866
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	19, 448
BstMAI	GTCTC	2 cut(s)	249, 828
BstMBI	GATC	2 cut(s)	16, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	318, 481, 505, 878
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	3 cut(s)	109, 195, 398
BstSFI	CTRYAG	2 cut(s)	716, 732
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	4 cut(s)	312, 398, 499, 577
BtgZI	GCGATG	1 cut(s)	116
BtrI	CACGTC	1 cut(s)	344
BveI	ACCTGC	1 cut(s)	863
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	311, 347, 575
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	119, 538, 697
CviAII	CATG	1 cut(s)	223
CviQI	GTAC	3 cut(s)	119, 538, 697
DdeI	CTNAG	5 cut(s)	246, 315, 609, 827, 866
DpnI	GATC	2 cut(s)	18, 447
DpnII	GATC	2 cut(s)	16, 445
DriI	GACNNNNNGTC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	46
Eam1105I	GACNNNNNGTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	774
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	257, 636
Eco81I	CCTNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	774
EcoT22I	ATGCAT	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	1 cut(s)	226
FaiI	YATR	9 cut(s)	224, 352, 354, 415, 417, 429, 442, 464, 553
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	1 cut(s)	99
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	4 cut(s)	312, 398, 499, 577
HapII	CCGG	2 cut(s)	111, 197
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	375, 740, 799
HpaII	CCGG	2 cut(s)	111, 197
HphI	GGTGA	2 cut(s)	450, 794
Hpy166II	GTNNAC	3 cut(s)	151, 347, 636
Hpy188I	TCNGA	5 cut(s)	190, 276, 283, 436, 828
Hpy188III	TCNNGA	3 cut(s)	295, 385, 791
Hpy8I	GTNNAC	3 cut(s)	151, 347, 636
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	7 cut(s)	489, 562, 575, 611, 656, 853, 853
HpyCH4III	ACNGT	5 cut(s)	132, 155, 392, 787, 839
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	6 cut(s)	125, 413, 545, 551, 718, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	318, 481, 505, 878
HpyF3I	CTNAG	5 cut(s)	246, 315, 609, 827, 866
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	16, 445
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	3 cut(s)	513, 622, 862
LweI	GCATC	1 cut(s)	538
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	467, 875
MalI	GATC	2 cut(s)	18, 447
MboI	GATC	2 cut(s)	16, 445
MboII	GAAGA	2 cut(s)	33, 671
MhlI	GDGCHC	2 cut(s)	486, 510
MluCI	AATT	2 cut(s)	265, 806
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	7 cut(s)	39, 247, 435, 604, 624, 696, 699
Mph1103I	ATGCAT	1 cut(s)	553
MseI	TTAA	2 cut(s)	171, 288
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	111, 197
MspR9I	CCNGG	3 cut(s)	111, 197, 400
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	4 cut(s)	318, 481, 505, 878
NciI	CCSGG	2 cut(s)	111, 197
NdeII	GATC	2 cut(s)	16, 445
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	4 cut(s)	243, 509, 576, 624
NmeAIII	GCCGAG	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	553
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	740, 799
PflMI	CCANNNNNTGG	2 cut(s)	356, 584
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	4 cut(s)	243, 509, 576, 624
PspPI	GGNCC	3 cut(s)	311, 347, 575
PstI	CTGCAG	2 cut(s)	720, 736
RsaI	GTAC	3 cut(s)	120, 539, 698
RsaNI	GTAC	3 cut(s)	119, 538, 697
RseI	CAYNNNNRTG	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	171, 288
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	16, 445
Sau96I	GGNCC	3 cut(s)	311, 347, 575
ScaI	AGTACT	1 cut(s)	120
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	3 cut(s)	111, 197, 400
SduI	GDGCHC	2 cut(s)	486, 510
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	2 cut(s)	716, 732
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	2 cut(s)	265, 806
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	109, 195, 398
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	5 cut(s)	132, 155, 392, 787, 839
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	219, 792
TasI	AATT	2 cut(s)	265, 806
TatI	WGTACW	2 cut(s)	118, 537
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	740, 799
Tru1I	TTAA	2 cut(s)	171, 288
Tru9I	TTAA	2 cut(s)	171, 288
TspDTI	ATGAA	2 cut(s)	119, 672
TspGWI	ACGGA	1 cut(s)	500
Van91I	CCANNNNNTGG	2 cut(s)	356, 584
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XmiI	GTMKAC	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	120
Zsp2I	ATGCAT	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.