AT5G22020

Strictosidine synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011049
Physical Location & Seq
Reverse (-)
7287628 .. 7289646
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22020.2

Sequence Viewer

Length: 1188 bp
ATGGCTTTGTTCTTATCTCCTAAAACCATCACTCTTCTCTTCTTCTCCCTCTCCCTCGCACTCTACTGCAGCATCGATCCTTTCCACCACTGCGCCATTTCCGATTTCCCCAATTTCGTCTCTCACGAAGTTATCTCTCCACGTCCCGACGAAGTTCCATGGGAGAGAGATTCACAAAATTCACTTCAGAAATCAAAGATTCTGTTTTTTAACCAAATCCAAGGTCCAGAGAGCGTCGCCTTTGATTCTCTCGGACGTGGTCCGTACACAGGCGTTGCTGATGGTAGGGTTTTGTTTTGGGATGGAGAGAAATGGATTGATTTCGCTTATACTTCGAGTAATCGATCGGAGATTTGTGATCCGAAGCCTTCTGCTTTGAGTTACTTGAGGAATGAACATATATGTGGTCGTCCTTTAGGTCTTCGTTTCGATAAGAGAACCGGAGATTTGTATATAGCTGATGCTTATATGGGACTTTTGAAAGTTGGTCCTGAAGGTGGTTTAGCAACGCCGCTTGTAACTGAAGCTGAAGGTGTGCCGTTGGGGTTTACTAATGATCTTGACATTGCTGATGATGGAACTGTTTACTTTACAGATAGCAGCATTAGTTACCAGAGGAGGAACTTCTTGCAGCTCGTTTTCTCTGGAGACAATACTGGGAGGGTTCTAAAGTATGATCCAGTAGCTAAGAAAGCTGTTGTTTTGGTCTCAAATCTTCAGTTTCCGAATGGTGTCTCTATCAGCAGAGACGGTTCTTTCTTTGTATTCTGCGAAGGAGATATTGGAAGCCTACGAAGATACTGGTTGAAAGGCGAGAAAGCTGGAACGACAGATGTGTTTGCGTATTTACCAGGGCATCCTGATAACGTAAGAACCAACCAAAAGGGTGAATTTTGGGTAGCGCTTCATTGCAGACGCAACTACTACTCATACTTAATGGCAAGATATCCTAAGCTGAGGATGTTCATACTGAGACTGCCAATCACTGCGAGAACTCACTACTCGTTCCAGATAGGGTTACGGCCGCACGGGTTGGTGGTTAAGTATAGTCCTGAAGGGAAGCTTATGCATGTTTTGGAAGATAGTGAAGGGAAAGTTGTGAGATCAGTAAGTGAAGTGGAAGAAAAAGATGGGAAGCTTTGGATGGGAAGTGTGTTGATGAACTTTGTTGCTGTCTATGACCTCTGA

Protein Analysis

395

Amino Acids

44.53

Weight (kDa)

6.52

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 138 - 302 2.7e-11 SMP-30/Gluconolactonase/LRE-like region
Str_synth PF03088 185 - 272 2.7e-27 Strictosidine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011049)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica MD03G1159900.v1.1
prunus_persica Prupe.6G148100_v2.0.a1
pyrus_communis pycom03g11250
rosa_chinensis RchiOBHm_Chr5g0049151
rosa_laevigata RLG00000034594
rosa_multiflora Rmu_sc0001677.1_g000020
rosa_roxburghii Rroxscaffold_1G00032580
rosa_rugosa Rorug05G0244400
rosa_samantha Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana Rw5G030480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 512, 1025
AclWI GGATC 3 cut(s) 71, 353, 671
AcoI YGGCCR 1 cut(s) 1022
AcsI RAATTY 2 cut(s) 178, 890
AcuI CTGAAG 6 cut(s) 170, 513, 543, 549, 701, 1074
AfaI GTAC 1 cut(s) 266
AfeI AGCGCT 1 cut(s) 903
AfiI CCNNNNNNNGG 2 cut(s) 269, 497
AgsI TTSAA 2 cut(s) 481, 808
AjiI CACGTC 2 cut(s) 143, 257
AjnI CCWGG 1 cut(s) 850
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 9 cut(s) 458, 527, 634, 686, 695, 821, 955, 1063, 1138
AluI AGCT 9 cut(s) 458, 527, 634, 686, 695, 821, 955, 1063, 1138
Alw26I GTCTC 6 cut(s) 124, 642, 712, 739, 741, 967
AlwI GGATC 3 cut(s) 71, 353, 671
Aor51HI AGCGCT 1 cut(s) 903
AoxI GGCC 1 cut(s) 1022
ApeKI GCWGC 3 cut(s) 69, 600, 631
ApoI RAATTY 2 cut(s) 178, 890
ArsI GACNNNNNNTTYG 2 cut(s) 208, 240
AspLEI GCGC 2 cut(s) 95, 904
AspS9I GGNCC 3 cut(s) 224, 260, 488
AsuHPI GGTGA 1 cut(s) 899
AvaII GGWCC 3 cut(s) 224, 260, 488
BbsI GAAGAC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 956
BbvI GCAGC 3 cut(s) 81, 612, 643
BccI CCATC 6 cut(s) 35, 275, 296, 569, 1124, 1138
BceAI ACGGC 2 cut(s) 523, 1037
BciT130I CCWGG 1 cut(s) 852
BcoDI GTCTC 6 cut(s) 124, 642, 712, 739, 741, 967
BfmI CTRYAG 1 cut(s) 67
BfoI RGCGCY 1 cut(s) 905
BisI GCNGC 5 cut(s) 70, 512, 601, 632, 1025
BlsI GCNGC 5 cut(s) 71, 513, 602, 633, 1026
Bme1390I CCNGG 1 cut(s) 852
Bme18I GGWCC 3 cut(s) 224, 260, 488
BmgBI CACGTC 2 cut(s) 143, 257
BmgT120I GGNCC 3 cut(s) 224, 260, 488
BmrFI CCNGG 1 cut(s) 852
BmrI ACTGGG 1 cut(s) 666
BmsI GCATC 3 cut(s) 81, 451, 865
BmuI ACTGGG 1 cut(s) 666
BpiI GAAGAC 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 2 cut(s) 951, 956
BpuEI CTTGAG 1 cut(s) 406
Bsa29I ATCGAT 2 cut(s) 75, 343
BsaI GGTCTC 1 cut(s) 712
BsaJI CCNNGG 3 cut(s) 158, 220, 851
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 497
Bse1I ACTGG 3 cut(s) 661, 680, 806
Bse3DI GCAATG 2 cut(s) 564, 907
BseBI CCWGG 1 cut(s) 852
BseCI ATCGAT 2 cut(s) 75, 343
BseDI CCNNGG 3 cut(s) 158, 220, 851
BseGI GGATG 4 cut(s) 307, 856, 966, 1149
BseLI CCNNNNNNNGG 2 cut(s) 269, 497
BseMI GCAATG 2 cut(s) 564, 907
BseMII CTCAG 2 cut(s) 947, 962
BseNI ACTGG 3 cut(s) 661, 680, 806
BseRI GAGGAG 1 cut(s) 631
BseX3I CGGCCG 1 cut(s) 1022
BseXI GCAGC 3 cut(s) 81, 612, 643
Bsh1285I CGRYCG 2 cut(s) 347, 1025
BshFI GGCC 1 cut(s) 1024
BshVI ATCGAT 2 cut(s) 75, 343
BsiEI CGRYCG 2 cut(s) 347, 1025
BsiSI CCGG 1 cut(s) 441
BslFI GGGAC 2 cut(s) 129, 486
BslI CCNNNNNNNGG 2 cut(s) 269, 497
BsmAI GTCTC 6 cut(s) 124, 642, 712, 739, 741, 967
BsmBI CGTCTC 2 cut(s) 124, 741
BsmFI GGGAC 2 cut(s) 129, 486
BsnI GGCC 1 cut(s) 1024
Bso31I GGTCTC 1 cut(s) 712
Bsp143I GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 2 cut(s) 512, 1025
BspANI GGCC 1 cut(s) 1024
BspCNI CTCAG 2 cut(s) 948, 963
BspDI ATCGAT 2 cut(s) 75, 343
BspMAI CTGCAG 1 cut(s) 71
BspPI GGATC 3 cut(s) 71, 353, 671
BspTNI GGTCTC 1 cut(s) 712
BsrDI GCAATG 2 cut(s) 564, 907
BsrI ACTGG 3 cut(s) 661, 680, 806
BssECI CCNNGG 3 cut(s) 158, 220, 851
BssMI GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
BssT1I CCWWGG 2 cut(s) 158, 220
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 2 cut(s) 583, 752
Bst6I CTCTTC 2 cut(s) 39, 44
BstDEI CTNAG 4 cut(s) 687, 951, 956, 971
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 4 cut(s) 307, 856, 966, 1149
BstH2I RGCGCY 1 cut(s) 905
BstHHI GCGC 2 cut(s) 95, 904
BstKTI GATC 6 cut(s) 79, 347, 361, 559, 679, 1106
BstMAI GTCTC 6 cut(s) 124, 642, 712, 739, 741, 967
BstMBI GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
BstMCI CGRYCG 2 cut(s) 347, 1025
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstNI CCWGG 1 cut(s) 852
BstNSI RCATGY 1 cut(s) 1073
BstSCI CCNGG 1 cut(s) 850
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 81, 612, 643
BstV2I GAAGAC 1 cut(s) 413
BstZI CGGCCG 1 cut(s) 1022
Bsu15I ATCGAT 2 cut(s) 75, 343
BsuRI GGCC 1 cut(s) 1024
BsuTUI ATCGAT 2 cut(s) 75, 343
BtgI CCRYGG 1 cut(s) 158
BtrI CACGTC 2 cut(s) 143, 257
BtsCI GGATG 4 cut(s) 307, 856, 966, 1149
BtsI GCAGTG 2 cut(s) 88, 984
BtsIMutI CAGTG 2 cut(s) 88, 984
CfoI GCGC 2 cut(s) 95, 904
Cfr13I GGNCC 3 cut(s) 224, 260, 488
ClaI ATCGAT 2 cut(s) 75, 343
CseI GACGC 2 cut(s) 223, 924
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 159, 1070
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 4 cut(s) 687, 951, 956, 971
DpnI GATC 6 cut(s) 78, 346, 360, 558, 678, 1105
DpnII GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
EaeI YGGCCR 1 cut(s) 1022
EagI CGGCCG 1 cut(s) 1022
Eam1104I CTCTTC 2 cut(s) 39, 44
EarI CTCTTC 2 cut(s) 39, 44
EclXI CGGCCG 1 cut(s) 1022
Eco130I CCWWGG 2 cut(s) 158, 220
Eco31I GGTCTC 1 cut(s) 712
Eco32I GATATC 1 cut(s) 947
Eco47I GGWCC 3 cut(s) 224, 260, 488
Eco47III AGCGCT 1 cut(s) 903
Eco52I CGGCCG 1 cut(s) 1022
Eco57I CTGAAG 6 cut(s) 170, 513, 543, 549, 701, 1074
EcoRII CCWGG 1 cut(s) 850
EcoRV GATATC 1 cut(s) 947
EcoT14I CCWWGG 2 cut(s) 158, 220
EcoT22I ATGCAT 1 cut(s) 1071
ErhI CCWWGG 2 cut(s) 158, 220
Esp3I CGTCTC 2 cut(s) 124, 741
FaeI CATG 2 cut(s) 162, 1073
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FaqI GGGAC 2 cut(s) 129, 486
FatI CATG 2 cut(s) 158, 1069
Fnu4HI GCNGC 5 cut(s) 70, 512, 601, 632, 1025
FokI GGATG 4 cut(s) 314, 843, 973, 1156
Fsp4HI GCNGC 5 cut(s) 70, 512, 601, 632, 1025
GlaI GCGC 2 cut(s) 94, 903
GluI GCNGC 5 cut(s) 70, 512, 601, 632, 1025
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 905
HaeIII GGCC 1 cut(s) 1024
HapII CCGG 1 cut(s) 441
HgaI GACGC 2 cut(s) 223, 924
HhaI GCGC 2 cut(s) 95, 904
Hin1II CATG 2 cut(s) 162, 1073
Hin6I GCGC 2 cut(s) 93, 902
HinP1I GCGC 2 cut(s) 93, 902
HindIII AAGCTT 2 cut(s) 1061, 1136
HinfI GANTC 3 cut(s) 170, 199, 245
HpaII CCGG 1 cut(s) 441
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 3 cut(s) 267, 549, 586
Hpy188I TCNGA 7 cut(s) 103, 189, 254, 349, 363, 726, 1187
Hpy188III TCNNGA 9 cut(s) 125, 146, 227, 491, 560, 645, 860, 1009, 1052
Hpy8I GTNNAC 3 cut(s) 267, 549, 586
Hpy99I CGWCG 2 cut(s) 152, 239
HpyAV CCTTC 6 cut(s) 378, 488, 524, 767, 1049, 1082
HpyCH4III ACNGT 2 cut(s) 583, 752
HpyCH4IV ACGT 3 cut(s) 142, 256, 867
HpyCH4V TGCA 4 cut(s) 69, 631, 912, 1069
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 4 cut(s) 687, 951, 956, 971
HpySE526I ACGT 3 cut(s) 142, 256, 867
Hsp92II CATG 2 cut(s) 162, 1073
HspAI GCGC 2 cut(s) 93, 902
Kzo9I GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
Lsp1109I GCAGC 3 cut(s) 81, 612, 643
LweI GCATC 3 cut(s) 81, 451, 865
MaeII ACGT 3 cut(s) 142, 256, 867
MaeIII GTNAC 4 cut(s) 380, 517, 608, 1017
MalI GATC 6 cut(s) 78, 346, 360, 558, 678, 1105
MboI GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
MboII GAAGA 8 cut(s) 26, 31, 34, 413, 707, 807, 1091, 1133
MluCI AATT 3 cut(s) 112, 178, 890
MnlI CCTC 7 cut(s) 59, 65, 381, 609, 612, 654, 951
Mph1103I ATGCAT 1 cut(s) 1071
MseI TTAA 3 cut(s) 210, 935, 1041
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 1 cut(s) 852
MvaI CCWGG 1 cut(s) 852
MwoI GCNNNNNNNGC 1 cut(s) 692
NcoI CCATGG 1 cut(s) 158
NdeII GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
NlaIII CATG 2 cut(s) 162, 1073
NsiI ATGCAT 1 cut(s) 1071
NspI RCATGY 1 cut(s) 1073
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 170, 199, 245
PflFI GACNNNGTC 1 cut(s) 258
PkrI GCNGC 5 cut(s) 71, 513, 602, 633, 1026
Ple19I CGATCG 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspPI GGNCC 3 cut(s) 224, 260, 488
PstI CTGCAG 1 cut(s) 71
PsyI GACNNNGTC 1 cut(s) 258
PvuI CGATCG 1 cut(s) 347
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 3 cut(s) 210, 935, 1041
SatI GCNGC 5 cut(s) 70, 512, 601, 632, 1025
Sau3AI GATC 6 cut(s) 76, 344, 358, 556, 676, 1103
Sau96I GGNCC 3 cut(s) 224, 260, 488
ScrFI CCNGG 1 cut(s) 852
SfaNI GCATC 3 cut(s) 81, 451, 865
SfcI CTRYAG 1 cut(s) 67
SinI GGWCC 3 cut(s) 224, 260, 488
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 3 cut(s) 112, 178, 890
SsiI CCGC 2 cut(s) 512, 1025
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 2 cut(s) 158, 220
TaaI ACNGT 2 cut(s) 583, 752
TaiI ACGT 3 cut(s) 145, 259, 870
TaqI TCGA 4 cut(s) 75, 335, 343, 429
TasI AATT 3 cut(s) 112, 178, 890
TauI GCSGC 2 cut(s) 514, 1027
TfiI GAWTC 3 cut(s) 170, 199, 245
Tru1I TTAA 3 cut(s) 210, 935, 1041
Tru9I TTAA 3 cut(s) 210, 935, 1041
TscAI CASTG 2 cut(s) 95, 991
TseI GCWGC 3 cut(s) 69, 600, 631
TspDTI ATGAA 4 cut(s) 408, 896, 955, 1175
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 2 cut(s) 95, 991
Tth111I GACNNNGTC 1 cut(s) 258
VpaK11BI GGWCC 3 cut(s) 224, 260, 488
XapI RAATTY 2 cut(s) 178, 890
XceI RCATGY 1 cut(s) 1073
Zsp2I ATGCAT 1 cut(s) 1071
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.