Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011049

Physical Location & Seq

Genomic Coordinates Forward (+)

10925052 .. 10927584

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAAGCCCAGCAGAGTACTGGCGGCTCTGTTCCTTTTGGTGGCTGTCTACTGCGGAATCGACCCTTTTAAGCACAGTGCAATTGTGGAATTCCCGGACTTCCAAGCCCATAAGGTGGACATGCCGCCGTGGTCCTTGGTTCCGGAAGACAAAGACACCGAGAACCTCCTGCAGAAATCGGAGATTAAGTTCCTTAACCAAGTGCAAGGCCCTGAGAGCGTCACCTTTGACCCGCTTGGCCGCGGACCTTACACCGGCGTTGCTGATGGCAGAGTCTTGTTCTGGAATGGCCAAGCTTGGACTGATTTCGCCTATACTTCGCCTCACAGGTCAGATATATGTAGCCCAAAGCCATCACCTTTGAGTTACTTGAAGAATGAGCACATCTGCGGAAGGCCTCTGGGGCTACGCTTTGACAAGAAAACAGGTGATTTATACATCGCAGATGCATATCTTGGTCTGTTGAAGGTGGGGCCAGAAGGTGGTTTGGCAACTTCACTTACGACAGAGGCAGAAGGGGTGCCGCTAAGGTTTACTAATGATCTTGACATTGATGAAGAAGGGAATATTTACTTCACAGATAGTAGCACCATGTACCAGAGGAGGAACTTCATGCAATTGGTTTTCTCCGGGGAGGACACTGGGAGGGTTCTAAAATACAACCCAACCACAAAGGAAACAACTGTTCTTCAGAGGAATATCCGATTTCCAAATGGTCTGTCCCTGAGCAAGGATGGTTCCTTCTTTCTCTTTTGTGAAGGAGCCGTGGGCAGATTACGCAAGTACTGGTTGAAAAGTGAAAAAGCAGGAACTTCAGAAGTATTTGCAGTGCTGCCGGGATTTCCAGACAATGTCAGAACTAACGAAAATGGTGAATTTTGGGTGGCACTCCACTGCCGCCGGAATTTGTACACTCATATTTGTGCCGCATTCCCACAATTAAGGAAATTCTTACTCAAGCTTCCAGTTCCATCACGGATTCAGTTCCTGCTTCACATTGGAGGCCGACTGCATGCAGTGGTTGTGAAATACAGCCCAGAGGGTAAGATTTTGCAAATATTGGAAGATAGCGAGGGGAAGGTTGTTAAAGCTGTGAGTGAAGTTGAAGAAAAGGATGGAAAGTTATGGATGGGGAGTGTTCTGATGCCCTTCATGGCAGTCTATGACTTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

392

Amino Acids

43.95

Weight (kDa)

6.48

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SGL	PF08450	133 - 297	9.9e-13	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	180 - 266	7e-30	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca	FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica	MD03G1159900.v1.1
prunus_persica	Prupe.6G148100_v2.0.a1
pyrus_communis	pycom03g11250
rosa_chinensis	RchiOBHm_Chr5g0049151
rosa_laevigata	RLG00000034594
rosa_multiflora	Rmu_sc0001677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032580
rosa_rugosa	Rorug05G0244400
rosa_samantha	Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana	Rw5G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AccB7I	CCANNNNNTGG	2 cut(s)	115, 482
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	142
AcoI	YGGCCR	2 cut(s)	238, 289
AcsI	RAATTY	4 cut(s)	89, 875, 904, 947
AcuI	CTGAAG	2 cut(s)	674, 798
AfaI	GTAC	4 cut(s)	18, 596, 785, 911
AfiI	CCNNNNNNNGG	5 cut(s)	40, 115, 254, 482, 730
AgsI	TTSAA	4 cut(s)	373, 466, 793, 1106
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	3 cut(s)	296, 961, 1091
AluI	AGCT	3 cut(s)	296, 961, 1091
Alw21I	GWGCWC	1 cut(s)	384
AlwNI	CAGNNNCTG	1 cut(s)	988
Aor13HI	TCCGGA	1 cut(s)	142
AoxI	GGCC	6 cut(s)	208, 238, 289, 395, 473, 1003
ApeKI	GCWGC	1 cut(s)	832
ApoI	RAATTY	4 cut(s)	89, 875, 904, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspS9I	GGNCC	4 cut(s)	132, 209, 245, 473
AsuC2I	CCSGG	3 cut(s)	95, 631, 837
AsuHPI	GGTGA	4 cut(s)	214, 348, 440, 884
AvaII	GGWCC	2 cut(s)	132, 245
BalI	TGGCCA	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	819
BccI	CCATC	6 cut(s)	260, 361, 728, 979, 1109, 1123
BceAI	ACGGC	2 cut(s)	112, 749
BcnI	CCSGG	3 cut(s)	95, 631, 837
BfmI	CTRYAG	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	403
BisI	GCNGC	7 cut(s)	24, 125, 241, 524, 833, 898, 927
BlsI	GCNGC	7 cut(s)	25, 126, 242, 525, 834, 899, 928
BmcAI	AGTACT	2 cut(s)	18, 785
Bme1390I	CCNGG	3 cut(s)	95, 631, 837
Bme18I	GGWCC	2 cut(s)	132, 245
BmgT120I	GGNCC	4 cut(s)	132, 209, 245, 473
BmiI	GGNNCC	5 cut(s)	141, 474, 522, 739, 763
BmrFI	CCNGG	3 cut(s)	95, 631, 837
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	2 cut(s)	436, 1134
BmuI	ACTGGG	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	153
Bpu10I	CCTNAGC	2 cut(s)	527, 725
BpuEI	CTTGAG	1 cut(s)	941
BpuMI	CCSGG	3 cut(s)	95, 631, 837
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	5 cut(s)	128, 135, 241, 630, 765
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 115, 254, 482, 730
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	4 cut(s)	24, 646, 791, 965
Bse8I	GATNNNNATC	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	142
BseDI	CCNNGG	5 cut(s)	128, 135, 241, 630, 765
BseGI	GGATG	3 cut(s)	739, 1120, 1134
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	5 cut(s)	40, 115, 254, 482, 730
BseMII	CTCAG	2 cut(s)	204, 716
BseNI	ACTGG	4 cut(s)	24, 646, 791, 965
BseRI	GAGGAG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	819
BseYI	CCCAGC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	6 cut(s)	210, 240, 291, 397, 475, 1005
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	6 cut(s)	95, 143, 255, 630, 836, 901
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	5 cut(s)	40, 115, 254, 482, 730
BsmFI	GGGAC	1 cut(s)	706
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	6 cut(s)	210, 240, 291, 397, 475, 1005
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp13I	TCCGGA	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	1 cut(s)	541
BspANI	GGCC	6 cut(s)	210, 240, 291, 397, 475, 1005
BspCNI	CTCAG	2 cut(s)	205, 717
BspEI	TCCGGA	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	5 cut(s)	141, 474, 522, 739, 763
BspMAI	CTGCAG	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	4 cut(s)	24, 646, 791, 965
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	5 cut(s)	128, 135, 241, 630, 765
BssMI	GATC	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	77, 685
BstAUI	TGTACA	1 cut(s)	909
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	4 cut(s)	213, 527, 725, 1168
BstDSI	CCRYGG	3 cut(s)	128, 241, 765
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	3 cut(s)	739, 1120, 1134
BstFNI	CGCG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	544
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 403, 777
BstNSI	RCATGY	2 cut(s)	124, 1016
BstSCI	CCNGG	3 cut(s)	93, 629, 835
BstSFI	CTRYAG	1 cut(s)	170
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	819
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	6 cut(s)	210, 240, 291, 397, 475, 1005
BtgI	CCRYGG	3 cut(s)	128, 241, 765
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	739, 1120, 1134
BtsI	GCAGTG	3 cut(s)	834, 892, 1023
BtsIMutI	CAGTG	5 cut(s)	82, 639, 834, 892, 1023
Cac8I	GCNNGC	1 cut(s)	1014
CaiI	CAGNNNCTG	1 cut(s)	988
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	4 cut(s)	132, 209, 245, 473
Cfr42I	CCGCGG	1 cut(s)	244
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	17, 595, 784, 910
CviAII	CATG	5 cut(s)	121, 592, 613, 1013, 1153
CviQI	GTAC	4 cut(s)	17, 595, 784, 910
DdeI	CTNAG	4 cut(s)	213, 527, 725, 1168
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	238, 289
Eco130I	CCWWGG	1 cut(s)	135
Eco147I	AGGCCT	1 cut(s)	397
Eco47I	GGWCC	2 cut(s)	132, 245
Eco57I	CTGAAG	2 cut(s)	674, 798
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	5 cut(s)	124, 595, 616, 1016, 1156
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	5 cut(s)	120, 591, 612, 1012, 1152
FauI	CCCGC	1 cut(s)	240
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	7 cut(s)	24, 125, 241, 524, 833, 898, 927
FokI	GGATG	3 cut(s)	746, 1127, 1141
Fsp4HI	GCNGC	7 cut(s)	24, 125, 241, 524, 833, 898, 927
GluI	GCNGC	7 cut(s)	24, 125, 241, 524, 833, 898, 927
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	6 cut(s)	210, 240, 291, 397, 475, 1005
HapII	CCGG	6 cut(s)	95, 143, 255, 630, 836, 901
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	5 cut(s)	124, 595, 616, 1016, 1156
HindIII	AAGCTT	2 cut(s)	294, 959
HinfI	GANTC	3 cut(s)	57, 273, 979
HpaII	CCGG	6 cut(s)	95, 143, 255, 630, 836, 901
HphI	GGTGA	4 cut(s)	214, 348, 440, 884
Hpy166II	GTNNAC	4 cut(s)	49, 118, 534, 912
Hpy188I	TCNGA	7 cut(s)	181, 334, 693, 704, 817, 857, 1143
Hpy188III	TCNNGA	4 cut(s)	143, 283, 545, 845
Hpy8I	GTNNAC	4 cut(s)	49, 118, 534, 912
HpyAV	CCTTC	9 cut(s)	387, 460, 473, 509, 554, 751, 752, 1072, 1159
HpyCH4III	ACNGT	2 cut(s)	77, 685
HpyCH4V	TGCA	9 cut(s)	80, 172, 205, 449, 616, 827, 1012, 1016, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 403, 777
HpyF3I	CTNAG	4 cut(s)	213, 527, 725, 1168
Hsp92II	CATG	5 cut(s)	124, 595, 616, 1016, 1156
Kpn2I	TCCGGA	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	1 cut(s)	819
LweI	GCATC	2 cut(s)	436, 1134
MaeIII	GTNAC	2 cut(s)	220, 365
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	6 cut(s)	158, 385, 569, 680, 1076, 1118
MfeI	CAATTG	2 cut(s)	81, 617
MhlI	GDGCHC	1 cut(s)	384
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	7 cut(s)	81, 89, 617, 875, 904, 938, 947
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	282
Mox20I	TGGCCA	1 cut(s)	291
Mph1103I	ATGCAT	1 cut(s)	451
MroI	TCCGGA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	5 cut(s)	69, 186, 195, 941, 1086
MslI	CAYNNNNRTG	1 cut(s)	921
Msp20I	TGGCCA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	6 cut(s)	95, 143, 255, 630, 836, 901
MspR9I	CCNGG	3 cut(s)	95, 631, 837
MunI	CAATTG	2 cut(s)	81, 617
Mva1269I	GAATGC	1 cut(s)	929
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	216, 403, 777
NciI	CCSGG	3 cut(s)	95, 631, 837
NdeII	GATC	1 cut(s)	541
NlaIII	CATG	5 cut(s)	124, 595, 616, 1016, 1156
NlaIV	GGNNCC	5 cut(s)	141, 474, 522, 739, 763
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	2 cut(s)	124, 1016
PaeI	GCATGC	1 cut(s)	1016
PceI	AGGCCT	1 cut(s)	397
PctI	GAATGC	1 cut(s)	929
PfeI	GAWTC	2 cut(s)	57, 979
PflFI	GACNNNGTC	1 cut(s)	851
PflMI	CCANNNNNTGG	2 cut(s)	115, 482
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	7 cut(s)	25, 126, 242, 525, 834, 899, 928
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	5 cut(s)	141, 474, 522, 739, 763
PspPI	GGNCC	4 cut(s)	132, 209, 245, 473
PstI	CTGCAG	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	988
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	4 cut(s)	18, 596, 785, 911
RsaNI	GTAC	4 cut(s)	17, 595, 784, 910
RseI	CAYNNNNRTG	1 cut(s)	921
SacII	CCGCGG	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	69, 186, 195, 941, 1086
SatI	GCNGC	7 cut(s)	24, 125, 241, 524, 833, 898, 927
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	4 cut(s)	132, 209, 245, 473
ScaI	AGTACT	2 cut(s)	18, 785
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	3 cut(s)	95, 631, 837
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	436, 1134
SfcI	CTRYAG	1 cut(s)	170
Sfr303I	CCGCGG	1 cut(s)	244
SgrAI	CRCCGGYG	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	132, 245
SmiMI	CAYNNNNRTG	1 cut(s)	921
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SphI	GCATGC	1 cut(s)	1016
Sse9I	AATT	7 cut(s)	81, 89, 617, 875, 904, 938, 947
SseBI	AGGCCT	1 cut(s)	397
SspI	AATATT	2 cut(s)	568, 1059
StuI	AGGCCT	1 cut(s)	397
StyD4I	CCNGG	3 cut(s)	93, 629, 835
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	77, 685
TaqI	TCGA	1 cut(s)	60
TasI	AATT	7 cut(s)	81, 89, 617, 875, 904, 938, 947
TatI	WGTACW	3 cut(s)	16, 783, 909
TauI	GCSGC	6 cut(s)	26, 127, 243, 526, 900, 929
TfiI	GAWTC	2 cut(s)	57, 979
Tru1I	TTAA	5 cut(s)	69, 186, 195, 941, 1086
Tru9I	TTAA	5 cut(s)	69, 186, 195, 941, 1086
TscAI	CASTG	5 cut(s)	82, 646, 834, 899, 1023
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	832
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	4 cut(s)	17, 570, 601, 1141
TspGWI	ACGGA	1 cut(s)	991
TspRI	CASTG	5 cut(s)	82, 646, 834, 899, 1023
Tth111I	GACNNNGTC	1 cut(s)	851
Van91I	CCANNNNNTGG	2 cut(s)	115, 482
VpaK11BI	GGWCC	2 cut(s)	132, 245
XagI	CCTNNNNNAGG	1 cut(s)	728
XapI	RAATTY	4 cut(s)	89, 875, 904, 947
XceI	RCATGY	2 cut(s)	124, 1016
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	48
ZrmI	AGTACT	2 cut(s)	18, 785
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.