Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011049

Physical Location & Seq

Genomic Coordinates Forward (+)

12449839 .. 12454759

Gene Structure 4921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G148100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGACCTACCAGAGTACTGGCGGCTCTGTTCCTTGTGCTAGCTCTGTACTGTGGGCTAGACCCTTTCAAGCACAGTGCGATTGTGGACTTCCCGGACTTCGAAGCCTATAAGGTGGACATGCCCTCTTGGTCCTCGGTTCCTACAGAGAGAGACCCCGAGAATCTTCTGCAGAAATCGGAGATTAAGTTTCTGAACCAAGTGCAAGGCCCTGAGAGCGTCGCCTTTGACCCACTTGGCCGTGGACCTTACGCGGGTGTTGCTGATGGCAGAGTCTTGTTCTGGAACGGCCAGTCTTGGACTGATTTTGCCTATACTTCGCCTCATAGGTCAGATATATGTAGTCCAAAACCATCACCTCTGAGTTACTTGAAGAATGAGCACATCTGTGGAAGACCTTTGGGGCTTCGCTTTGACAAGAAAACTGGTGATTTATACATTGCAGATGCATATTTTGGGCTGTTGAAGGTGGGGCCGGAAGGTGGTTTGGCAACTCCACTAACAACTGAGGCAGAAGGGGTGCCATTAAGATTTACTAATGATCTAGACATTGATGAAGAAGGGAATGTTTATTTTACAGATAGTAGCACCACATACCAGAGGAGGAACTTCATGCAGTTGGTTTTCTCTGCAGAGGATACTGGGAGGGTCCTAAAATACAACCCAACCACAAAGGAGACCACTGTTCTTGAGAAGAATCTCCAATTCCCAAATGGTTTGTCTCTAAGCAAGGATGGTTCCTTCTTTGTTTTTTGCGAAGGATCCATAGGCAGATTACGCAAGTATTGGTTGAAAGGTGAAAAGGCAGGAACTTCAGAAGTATTTGCCGTGCTGCCTGGATTTCCTGACAACGTCAGAACTAATGAAAATGGTGACTTTTGGGTAGCAGTCCATTGTCGCCGGAATATGTACACTCATCTCTGTGCTTTATTCCCTCAAATAAGGAAATTCCTACTCAAGCTTCCAATTTCAGCAAAGATTCAGTTCCTGATTCACATTGGGGGCCGACCCCATGCAGTCGTTGTGAAGTACAGCCCAGAGGGCAAGATTTTGCAGATATTGGAAGATAGTCAGGGTAAGGTTGTTAAAGCTGTCAGTGAAGTGGAAGAAAAGGATGGAAAATTATGGATGGGGAGTGTTCTGATGCCCTTCATTGCAGTCTACAACTTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Str_synth

Protein Analysis

392

Amino Acids

43.81

Weight (kDa)

6.67

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08470 AT5G22020 AT5G22020 AT5G22020
fragaria_vesca	FvH4_3g26730 FvH4_3g26730 FvH4_3g26730
malus_domestica	MD03G1159900.v1.1
prunus_persica	Prupe.6G148100_v2.0.a1
pyrus_communis	pycom03g11250
rosa_chinensis	RchiOBHm_Chr5g0049151
rosa_laevigata	RLG00000034594
rosa_multiflora	Rmu_sc0001677.1_g000020
rosa_roxburghii	Rroxscaffold_1G00032580
rosa_rugosa	Rorug05G0244400
rosa_samantha	Rh5AG323000 Rh5BG333600 Rh5CG358600 Rh5DG345000
rosa_wichuraiana	Rw5G030480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	1 cut(s)	1161
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	23, 254
AclWI	GGATC	2 cut(s)	756, 769
AcoI	YGGCCR	2 cut(s)	238, 289
AcsI	RAATTY	1 cut(s)	947
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	4 cut(s)	18, 50, 911, 1031
AfiI	CCNNNNNNNGG	2 cut(s)	254, 482
AgsI	TTSAA	4 cut(s)	70, 373, 466, 793
AjnI	CCWGG	1 cut(s)	835
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	4 cut(s)	44, 961, 1091, 1172
AluI	AGCT	4 cut(s)	44, 961, 1091, 1172
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	3 cut(s)	147, 671, 726
AlwI	GGATC	2 cut(s)	756, 769
AlwNI	CAGNNNCTG	1 cut(s)	988
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	5 cut(s)	208, 238, 289, 473, 1003
ApeKI	GCWGC	1 cut(s)	832
ApoI	RAATTY	1 cut(s)	947
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
AspS9I	GGNCC	6 cut(s)	132, 209, 245, 473, 649, 1003
AsuC2I	CCSGG	1 cut(s)	95
AsuHPI	GGTGA	4 cut(s)	348, 440, 809, 884
AsuII	TTCGAA	1 cut(s)	102
AsuNHI	GCTAGC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	3 cut(s)	132, 245, 649
BamHI	GGATCC	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	819
BccI	CCATC	5 cut(s)	260, 361, 728, 1109, 1123
BceAI	ACGGC	3 cut(s)	225, 304, 812
BciT130I	CCWGG	1 cut(s)	837
BciVI	GTATCC	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	147, 671, 726
BfaI	CTAG	3 cut(s)	41, 59, 545
BfmI	CTRYAG	3 cut(s)	144, 170, 630
BfuI	GTATCC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	1041
BisI	GCNGC	2 cut(s)	24, 833
BlsI	GCNGC	2 cut(s)	25, 834
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	95, 837
Bme18I	GGWCC	3 cut(s)	132, 245, 649
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	6 cut(s)	132, 209, 245, 473, 649, 1003
BmiI	GGNNCC	7 cut(s)	141, 474, 522, 650, 739, 763, 1004
BmrFI	CCNGG	2 cut(s)	95, 837
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	2 cut(s)	436, 1134
BmtI	GCTAGC	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	400
Bpu14I	TTCGAA	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	710, 941
BpuMI	CCSGG	1 cut(s)	95
BsaI	GGTCTC	2 cut(s)	147, 671
BsaJI	CCNNGG	2 cut(s)	135, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 482
Bse1I	ACTGG	4 cut(s)	24, 292, 430, 646
Bse3DI	GCAATG	2 cut(s)	438, 1152
BseBI	CCWGG	1 cut(s)	837
BseDI	CCNNGG	2 cut(s)	135, 241
BseGI	GGATG	3 cut(s)	739, 1120, 1134
BseLI	CCNNNNNNNGG	2 cut(s)	254, 482
BseMI	GCAATG	2 cut(s)	438, 1152
BseMII	CTCAG	3 cut(s)	204, 353, 498
BseNI	ACTGG	4 cut(s)	24, 292, 430, 646
BseRI	GAGGAG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	819
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	5 cut(s)	210, 240, 291, 475, 1005
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	3 cut(s)	95, 476, 901
BslI	CCNNNNNNNGG	2 cut(s)	254, 482
BsmAI	GTCTC	3 cut(s)	147, 671, 726
BsnI	GGCC	5 cut(s)	210, 240, 291, 475, 1005
Bso31I	GGTCTC	2 cut(s)	147, 671
BsoBI	CYCGRG	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	2 cut(s)	541, 761
BspACI	CCGC	2 cut(s)	23, 254
BspANI	GGCC	5 cut(s)	210, 240, 291, 475, 1005
BspCNI	CTCAG	3 cut(s)	205, 354, 499
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	7 cut(s)	141, 474, 522, 650, 739, 763, 1004
BspMAI	CTGCAG	2 cut(s)	174, 634
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	756, 769
BspT104I	TTCGAA	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	520
BspTNI	GGTCTC	2 cut(s)	147, 671
BsrDI	GCAATG	2 cut(s)	438, 1152
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	4 cut(s)	24, 292, 430, 646
BssECI	CCNNGG	2 cut(s)	135, 241
BssMI	GATC	2 cut(s)	541, 761
Bst2UI	CCWGG	1 cut(s)	837
Bst4CI	ACNGT	3 cut(s)	53, 77, 685
BstAUI	TGTACA	1 cut(s)	909
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	5 cut(s)	213, 362, 507, 725, 1168
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	739, 1120, 1134
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	544, 764
BstMAI	GTCTC	3 cut(s)	147, 671, 726
BstMBI	GATC	2 cut(s)	541, 761
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 260, 777, 1041
BstNI	CCWGG	1 cut(s)	837
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	93, 835
BstSFI	CTRYAG	3 cut(s)	144, 170, 630
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	819
BstV2I	GAAGAC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	761
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	761
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	5 cut(s)	210, 240, 291, 475, 1005
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	739, 1120, 1134
BtsIMutI	CAGTG	3 cut(s)	82, 681, 1102
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	988
Cfr13I	GGNCC	6 cut(s)	132, 209, 245, 473, 649, 1003
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	4 cut(s)	17, 49, 910, 1030
CspCI	CAANNNNNGTGG	2 cut(s)	670, 705
CviAII	CATG	3 cut(s)	121, 613, 1013
CviQI	GTAC	4 cut(s)	17, 49, 910, 1030
DdeI	CTNAG	5 cut(s)	213, 362, 507, 725, 1168
DpnI	GATC	2 cut(s)	543, 763
DpnII	GATC	2 cut(s)	541, 761
EaeI	YGGCCR	2 cut(s)	238, 289
Eco31I	GGTCTC	2 cut(s)	147, 671
Eco47I	GGWCC	3 cut(s)	132, 245, 649
Eco57I	CTGAAG	1 cut(s)	798
Eco88I	CYCGRG	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	209, 649
EcoRII	CCWGG	1 cut(s)	835
EcoT22I	ATGCAT	1 cut(s)	451
FaeI	CATG	3 cut(s)	124, 616, 1016
FatI	CATG	3 cut(s)	120, 612, 1012
FauI	CCCGC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	1161
Fnu4HI	GCNGC	2 cut(s)	24, 833
FokI	GGATG	3 cut(s)	746, 1127, 1141
Fsp4HI	GCNGC	2 cut(s)	24, 833
FspBI	CTAG	3 cut(s)	41, 59, 545
GluI	GCNGC	2 cut(s)	24, 833
HaeIII	GGCC	5 cut(s)	210, 240, 291, 475, 1005
HapII	CCGG	3 cut(s)	95, 476, 901
HgaI	GACGC	1 cut(s)	208
Hin1II	CATG	3 cut(s)	124, 616, 1016
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	5 cut(s)	163, 273, 697, 979, 991
HpaII	CCGG	3 cut(s)	95, 476, 901
HphI	GGTGA	4 cut(s)	348, 440, 809, 884
Hpy166II	GTNNAC	5 cut(s)	88, 118, 245, 912, 1162
Hpy188I	TCNGA	7 cut(s)	181, 195, 334, 363, 817, 857, 1143
Hpy188III	TCNNGA	5 cut(s)	283, 545, 689, 845, 988
Hpy8I	GTNNAC	5 cut(s)	88, 118, 245, 912, 1162
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	7 cut(s)	460, 473, 509, 554, 751, 752, 1159
HpyCH4III	ACNGT	3 cut(s)	53, 77, 685
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	9 cut(s)	172, 205, 443, 449, 616, 632, 1016, 1054, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 260, 777, 1041
HpyF3I	CTNAG	5 cut(s)	213, 362, 507, 725, 1168
HpySE526I	ACGT	1 cut(s)	852
Hsp92II	CATG	3 cut(s)	124, 616, 1016
Kzo9I	GATC	2 cut(s)	541, 761
Lsp1109I	GCAGC	1 cut(s)	819
LweI	GCATC	2 cut(s)	436, 1134
MaeI	CTAG	3 cut(s)	41, 59, 545
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	2 cut(s)	365, 872
MalI	GATC	2 cut(s)	543, 763
MboI	GATC	2 cut(s)	541, 761
MboII	GAAGA	7 cut(s)	158, 385, 405, 569, 706, 1076, 1118
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	4 cut(s)	704, 947, 966, 1121
MlyI	GAGTC	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	3 cut(s)	186, 527, 1086
MslI	CAYNNNNRTG	2 cut(s)	387, 921
MspI	CCGG	3 cut(s)	95, 476, 901
MspR9I	CCNGG	2 cut(s)	95, 837
MvaI	CCWGG	1 cut(s)	837
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	216, 260, 777, 1041
NciI	CCSGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	541, 761
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	124, 616, 1016
NlaIV	GGNNCC	7 cut(s)	141, 474, 522, 650, 739, 763, 1004
NmuCI	GTSAC	1 cut(s)	872
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	102
OliI	CACNNNNGTG	1 cut(s)	387
PfeI	GAWTC	4 cut(s)	163, 697, 979, 991
PflFI	GACNNNGTC	1 cut(s)	851
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	25, 834
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	649
Psp5II	RGGWCCY	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	835
PspGI	CCWGG	1 cut(s)	835
PspN4I	GGNNCC	7 cut(s)	141, 474, 522, 650, 739, 763, 1004
PspPI	GGNCC	6 cut(s)	132, 209, 245, 473, 649, 1003
PspPPI	RGGWCCY	1 cut(s)	649
PstI	CTGCAG	2 cut(s)	174, 634
PstNI	CAGNNNCTG	1 cut(s)	988
PsuI	RGATCY	1 cut(s)	761
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	4 cut(s)	18, 50, 911, 1031
RsaNI	GTAC	4 cut(s)	17, 49, 910, 1030
RseI	CAYNNNNRTG	2 cut(s)	387, 921
SaqAI	TTAA	3 cut(s)	186, 527, 1086
SatI	GCNGC	2 cut(s)	24, 833
Sau3AI	GATC	2 cut(s)	541, 761
Sau96I	GGNCC	6 cut(s)	132, 209, 245, 473, 649, 1003
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	95, 837
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	436, 1134
SfcI	CTRYAG	3 cut(s)	144, 170, 630
SfuI	TTCGAA	1 cut(s)	102
SinI	GGWCC	3 cut(s)	132, 245, 649
SmiMI	CAYNNNNRTG	2 cut(s)	387, 921
SmlI	CTYRAG	2 cut(s)	689, 956
SmoI	CTYRAG	2 cut(s)	689, 956
Sse9I	AATT	4 cut(s)	704, 947, 966, 1121
SsiI	CCGC	2 cut(s)	23, 254
SspMI	CTAG	3 cut(s)	41, 59, 545
StyD4I	CCNGG	2 cut(s)	93, 835
TaaI	ACNGT	3 cut(s)	53, 77, 685
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	704, 947, 966, 1121
TatI	WGTACW	4 cut(s)	16, 48, 909, 1029
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	4 cut(s)	163, 697, 979, 991
Tru1I	TTAA	3 cut(s)	186, 527, 1086
Tru9I	TTAA	3 cut(s)	186, 527, 1086
TscAI	CASTG	3 cut(s)	82, 688, 1102
TseFI	GTSAC	1 cut(s)	872
TseI	GCWGC	1 cut(s)	832
Tsp45I	GTSAC	1 cut(s)	872
TspDTI	ATGAA	4 cut(s)	570, 601, 879, 1141
TspRI	CASTG	3 cut(s)	82, 688, 1102
Tth111I	GACNNNGTC	1 cut(s)	851
VpaK11BI	GGWCC	3 cut(s)	132, 245, 649
XapI	RAATTY	1 cut(s)	947
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	1161
XspI	CTAG	3 cut(s)	41, 59, 545
ZrmI	AGTACT	1 cut(s)	18
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.