AT1G08580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013572
Physical Location & Seq
Reverse (-)
2714994 .. 2716532
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08580.1

Sequence Viewer

Length: 372 bp
ATGGCCAAGTACAACGAGATTGCGAAGAAGAAGAGAGAGGCTAAAGCCGATAGAAAACGAGCCATTCACGGCGATCCTCTCACCAATAAATTGAAGACCAGAACTCCGGTCCCCTCCGTCTCCGGCAAACGTCAGAGAAAGCTCCTTCGCAAATGGCGCAGAGAGCAGAAAGATATGGTGGAGAAGGGTCTTGTTACTATGGAAGATGTGGAGATGGCTTCTGCTCAAGCTGCATCAGAAGACTCCAAGAAATCCCCCAGAAAATTTAGCGTTAAGAAGAGCTTGAAGTTGAACAAACTAAATAATAAAGGCAAAAAGAAGAAAAACCAGAAAGCCAGTGGTGAAAAATCTGCTGATTGTATGCTAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.05

Weight (kDa)

10.38

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08580
fragaria_vesca FvH4_7g33930
malus_domestica MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica Prupe.2G325600_v2.0.a1
pyrus_communis pycom01g24370 pycom07g28060
rosa_chinensis RchiOBHm_Chr1g0384121
rosa_laevigata RLG00000026070
rosa_multiflora Rmu_sc0005139.1_g000017
rosa_roxburghii Rroxscaffold_4G00276970
rosa_rugosa Rorug01G0445000 Rorug01G0445100
rosa_samantha Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana Rw1G040220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 3 cut(s) 94, 286, 292
AluBI AGCT 3 cut(s) 142, 230, 282
AluI AGCT 3 cut(s) 142, 230, 282
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 73, 353
AvaII GGWCC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 2 cut(s) 101, 246
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 365
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 111
BmsI GCATC 1 cut(s) 242
BpiI GAAGAC 2 cut(s) 101, 246
BpuEI CTTGAG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bse1I ACTGG 1 cut(s) 336
BseNI ACTGG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 107, 123
BslFI GGGAC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 73
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 336
BssMI GATC 1 cut(s) 73
Bst6I CTCTTC 2 cut(s) 26, 272
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 156, 163, 230
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 2 cut(s) 101, 246
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 343
CfoI GCGC 1 cut(s) 159
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 10
CviJI RGCY 9 cut(s) 5, 41, 47, 62, 142, 218, 230, 282, 335
CviKI_1 RGCY 9 cut(s) 5, 41, 47, 62, 142, 218, 230, 282, 335
CviQI GTAC 1 cut(s) 10
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 26, 272
EarI CTCTTC 2 cut(s) 26, 272
Eco47I GGWCC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 124
FaiI YATR 3 cut(s) 176, 200, 362
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 365
GlaI GCGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 231
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 107, 123
HhaI GCGC 1 cut(s) 159
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 1 cut(s) 242
HpaII CCGG 2 cut(s) 107, 123
HphI GGTGA 2 cut(s) 73, 353
Hpy188I TCNGA 2 cut(s) 135, 238
HpyAV CCTTC 2 cut(s) 155, 178
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 163, 230
HpySE526I ACGT 1 cut(s) 130
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 272
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 6 cut(s) 112, 120, 136, 271, 341, 349
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 242
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 8 cut(s) 37, 40, 43, 106, 215, 251, 289, 331
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 89, 263
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 3 cut(s) 31, 87, 124
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 107, 123
MwoI GCNNNNNNNGC 3 cut(s) 156, 163, 230
NdeII GATC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 236
SetI ASST 4 cut(s) 133, 144, 232, 284
SfaNI GCATC 1 cut(s) 242
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 2 cut(s) 89, 263
SspMI CTAG 1 cut(s) 365
TaiI ACGT 1 cut(s) 133
TasI AATT 2 cut(s) 89, 263
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 343
TseI GCWGC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.