Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013572

Physical Location & Seq

Genomic Coordinates Forward (+)

32300042 .. 32301656

Gene Structure 1615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1235600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGAAGTTCAATGAGGTGCAGAAGAGGAGGAGAGCGCAGAAAGCGGAGAAGAAGAGATCGGTTCACGGCGATCCAACCACCGGGAAGCTCCACAACAAGCCCCAACCCCTCTCCATCTCCGGCAAGCGCAAGCGCAAGCTCTTGAAAAAATGGCGCCGAGATCAGAACGAGGCTGTGAAGAAGGGACTTATAACTATGCAAGATGTCGAAATGGCTGCTGCCGATGCTGATGAAGTAGAAGAATCTAGAGACACCAAGACTTCTTCTTCAAAGTTTCCCATGAAGAAGAAGAGTCTCAAGATCAAACAACTAAAAGGCAAAGGTAAGAAGAAAGGAAAATCTCCTAAGGCGGCTGCTGCTGCCACCCCCGAAGCTTCTGTGGATGCAATGCTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.87

Weight (kDa)

10.38

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08580
fragaria_vesca	FvH4_7g33930
malus_domestica	MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica	Prupe.2G325600_v2.0.a1
pyrus_communis	pycom01g24370 pycom07g28060
rosa_chinensis	RchiOBHm_Chr1g0384121
rosa_laevigata	RLG00000026070
rosa_multiflora	Rmu_sc0005139.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276970
rosa_rugosa	Rorug01G0445000 Rorug01G0445100
rosa_samantha	Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana	Rw1G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	156
AciI	CCGC	2 cut(s)	47, 353
AclWI	GGATC	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	13, 148, 273
AluBI	AGCT	3 cut(s)	91, 142, 377
AluI	AGCT	3 cut(s)	91, 142, 377
Alw26I	GTCTC	2 cut(s)	246, 302
AlwI	GGATC	1 cut(s)	68
ApeKI	GCWGC	5 cut(s)	218, 221, 356, 359, 362
AspLEI	GCGC	4 cut(s)	40, 132, 138, 159
AsuC2I	CCSGG	1 cut(s)	85
AxyI	CCTNAGG	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	156
BbvI	GCAGC	5 cut(s)	205, 208, 343, 346, 349
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	2 cut(s)	246, 302
BfaI	CTAG	2 cut(s)	249, 395
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	6 cut(s)	219, 222, 354, 357, 360, 363
BlsI	GCNGC	6 cut(s)	220, 223, 355, 358, 361, 364
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	217, 376
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	43, 46
BseXI	GCAGC	5 cut(s)	205, 208, 343, 346, 349
BsgI	GTGCAG	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	84, 123
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	246, 302
BsmFI	GGGAC	1 cut(s)	201
Bsp143I	GATC	4 cut(s)	59, 73, 163, 303
BspACI	CCGC	2 cut(s)	47, 353
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	396
BssMI	GATC	4 cut(s)	59, 73, 163, 303
BssNI	GRCGYC	1 cut(s)	157
Bst6I	CTCTTC	3 cut(s)	20, 50, 287
BstACI	GRCGYC	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	128, 134, 140
BstDEI	CTNAG	1 cut(s)	348
BstF5I	GGATG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	4 cut(s)	40, 132, 138, 159
BstKTI	GATC	4 cut(s)	62, 76, 166, 306
BstMAI	GTCTC	2 cut(s)	246, 302
BstMBI	GATC	4 cut(s)	59, 73, 163, 303
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 227, 359, 362
BstSCI	CCNGG	1 cut(s)	83
BstV1I	GCAGC	5 cut(s)	205, 208, 343, 346, 349
Bsu36I	CCTNAGG	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	128, 134, 140
CfoI	GCGC	4 cut(s)	40, 132, 138, 159
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	7 cut(s)	91, 103, 142, 176, 218, 356, 377
CviKI_1	RGCY	7 cut(s)	91, 103, 142, 176, 218, 356, 377
DdeI	CTNAG	1 cut(s)	348
DinI	GGCGCC	1 cut(s)	158
DpnI	GATC	4 cut(s)	61, 75, 165, 305
DpnII	GATC	4 cut(s)	59, 73, 163, 303
Eam1104I	CTCTTC	3 cut(s)	20, 50, 287
EarI	CTCTTC	3 cut(s)	20, 50, 287
Eco81I	CCTNAGG	1 cut(s)	348
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
FaeI	CATG	1 cut(s)	286
FaiI	YATR	3 cut(s)	194, 200, 284
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	6 cut(s)	219, 222, 354, 357, 360, 363
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	6 cut(s)	219, 222, 354, 357, 360, 363
FspBI	CTAG	2 cut(s)	249, 395
GlaI	GCGC	4 cut(s)	39, 131, 137, 158
GluI	GCNGC	6 cut(s)	219, 222, 354, 357, 360, 363
HaeII	RGCGCY	1 cut(s)	160
HapII	CCGG	2 cut(s)	84, 123
HhaI	GCGC	4 cut(s)	40, 132, 138, 159
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	4 cut(s)	38, 130, 136, 157
HinP1I	GCGC	4 cut(s)	38, 130, 136, 157
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	2 cut(s)	245, 295
HpaII	CCGG	2 cut(s)	84, 123
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	145, 249, 301
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	22, 202, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 227, 359, 362
HpyF3I	CTNAG	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	4 cut(s)	38, 130, 136, 157
KasI	GGCGCC	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	59, 73, 163, 303
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	2 cut(s)	97, 136
Lsp1109I	GCAGC	5 cut(s)	205, 208, 343, 346, 349
LweI	GCATC	2 cut(s)	217, 376
MaeI	CTAG	2 cut(s)	249, 395
MalI	GATC	4 cut(s)	61, 75, 165, 305
MboI	GATC	4 cut(s)	59, 73, 163, 303
Mly113I	GGCGCC	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	5 cut(s)	10, 21, 24, 122, 166
MspI	CCGG	2 cut(s)	84, 123
MspR9I	CCNGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	4 cut(s)	44, 227, 359, 362
NarI	GGCGCC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	4 cut(s)	59, 73, 163, 303
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	220, 223, 355, 358, 361, 364
PleI	GAGTC	1 cut(s)	303
PluTI	GGCGCC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	158
SatI	GCNGC	6 cut(s)	219, 222, 354, 357, 360, 363
Sau3AI	GATC	4 cut(s)	59, 73, 163, 303
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	5 cut(s)	21, 93, 144, 328, 379
SfaNI	GCATC	2 cut(s)	217, 376
SfoI	GGCGCC	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SsiI	CCGC	2 cut(s)	47, 353
SspDI	GGCGCC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	249, 395
StyD4I	CCNGG	1 cut(s)	83
TaqI	TCGA	1 cut(s)	210
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	245
TseI	GCWGC	5 cut(s)	218, 221, 356, 359, 362
TspDTI	ATGAA	2 cut(s)	249, 299
XbaI	TCTAGA	1 cut(s)	248
XspI	CTAG	2 cut(s)	249, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.