Rw1G040220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013572
Physical Location & Seq
Reverse (-)
67578491 .. 67579808
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040220.1

Sequence Viewer

Length: 387 bp
ATGGCCAAGTTCAACGAGGTGCAAAAGAAGAAGAGAGCGCAGAGTCAGGAGAAGAAGAGAAGGATTCACGGCGACCCAGTCAGTGGGAAGCTCCATCTGAAGCAGCAACCCGTCTCCATCTCCGGCAAGCGCAAGCGGAAGCTCGAAAAAAAATGGCGGAGGGACCAGAAAGATGCTGTGGAGAAGGGCCTGATTACTATGGAAGATGTCGAAATGGCTGCTGCTGATGATAATGAAGAATCTCAAGGGACGAAGAAAGGTTCAAAGAAGTTCCACATGAAGAAGAGCATCAAGCTTAAGCAAGGAAAGCACAAGGGTAAGAAGAAGGGAAAATCTTCTAAGCCTGCTTCTGCTGCTCAAGCTTCGGTGGATGTAATGGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

10.29

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08580
fragaria_vesca FvH4_7g33930
malus_domestica MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica Prupe.2G325600_v2.0.a1
pyrus_communis pycom01g24370 pycom07g28060
rosa_chinensis RchiOBHm_Chr1g0384121
rosa_laevigata RLG00000026070
rosa_multiflora Rmu_sc0005139.1_g000017
rosa_roxburghii Rroxscaffold_4G00276970
rosa_rugosa Rorug01G0445000 Rorug01G0445100
rosa_samantha Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana Rw1G040220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 2 cut(s) 136, 157
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 83
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 13, 264
AluBI AGCT 4 cut(s) 91, 142, 295, 362
AluI AGCT 4 cut(s) 91, 142, 295, 362
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 3, 187
ApeKI GCWGC 4 cut(s) 103, 218, 221, 353
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 2 cut(s) 40, 132
AspS9I GGNCC 2 cut(s) 163, 187
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 4 cut(s) 115, 205, 208, 340
BccI CCATC 2 cut(s) 102, 125
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcoDI GTCTC 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 4 cut(s) 104, 219, 222, 354
BlsI GCNGC 4 cut(s) 105, 220, 223, 355
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 187
BmiI GGNNCC 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 163, 297
BmuI ACTGGG 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 228, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 4 cut(s) 115, 205, 208, 340
BshFI GGCC 2 cut(s) 5, 189
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 176, 262
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 176, 262
BsnI GGCC 2 cut(s) 5, 189
BspACI CCGC 2 cut(s) 136, 157
BspANI GGCC 2 cut(s) 5, 189
BspLI GGNNCC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 278
BspTI CTTAAG 1 cut(s) 296
BsrI ACTGG 1 cut(s) 77
Bst6I CTCTTC 3 cut(s) 26, 50, 278
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 128, 134, 345
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 376
BstHHI GCGC 2 cut(s) 40, 132
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 307, 353, 359
BstV1I GCAGC 4 cut(s) 115, 205, 208, 340
BsuRI GGCC 2 cut(s) 5, 189
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 128, 134, 345
CfoI GCGC 2 cut(s) 40, 132
Cfr13I GGNCC 2 cut(s) 163, 187
CviAII CATG 1 cut(s) 277
CviJI RGCY 8 cut(s) 5, 91, 142, 189, 218, 295, 343, 362
CviKI_1 RGCY 8 cut(s) 5, 91, 142, 189, 218, 295, 343, 362
DdeI CTNAG 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 26, 50, 278
EarI CTCTTC 3 cut(s) 26, 50, 278
EciI GGCGGA 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 200, 278
FaqI GGGAC 2 cut(s) 176, 262
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 104, 219, 222, 354
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 4 cut(s) 104, 219, 222, 354
GlaI GCGC 2 cut(s) 39, 131
GluI GCNGC 4 cut(s) 104, 219, 222, 354
HaeIII GGCC 2 cut(s) 5, 189
HapII CCGG 1 cut(s) 123
HhaI GCGC 2 cut(s) 40, 132
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 2 cut(s) 38, 130
HinP1I GCGC 2 cut(s) 38, 130
HindIII AAGCTT 2 cut(s) 293, 360
HinfI GANTC 3 cut(s) 43, 64, 239
HpaII CCGG 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 54, 178, 319
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 353, 359
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 2 cut(s) 38, 130
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 6 cut(s) 32, 90, 136, 179, 203, 357
Lsp1109I GCAGC 4 cut(s) 115, 205, 208, 340
LweI GCATC 2 cut(s) 163, 297
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 2 cut(s) 10, 153
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 334
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 307, 353, 359
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 64, 239
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 4 cut(s) 105, 220, 223, 355
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 163, 187
PsyI GACNNNGTC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 4 cut(s) 104, 219, 222, 354
Sau96I GGNCC 2 cut(s) 163, 187
SchI GAGTC 1 cut(s) 52
SetI ASST 6 cut(s) 21, 93, 144, 262, 297, 364
SfaNI GCATC 2 cut(s) 163, 297
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 3 cut(s) 243, 296, 357
SmoI CTYRAG 3 cut(s) 243, 296, 357
SsiI CCGC 2 cut(s) 136, 157
TaqI TCGA 2 cut(s) 144, 210
TfiI GAWTC 2 cut(s) 64, 239
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 1 cut(s) 88
TseI GCWGC 4 cut(s) 103, 218, 221, 353
TspDTI ATGAA 2 cut(s) 249, 293
TspRI CASTG 1 cut(s) 88
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.