Rh1AG470500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0013572
Physical Location & Seq
Forward (+)
68319504 .. 68320450
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG470500.1

Sequence Viewer

Length: 390 bp
ATGGCCAAGTTCAACGAGGTGCAGAAGAAGAAGAGAGCGCAGAACCAGGAGAAGAAGAGAAGGATTCACGGCGACCCAGTCAGTGGGAAGCTTCATCTGAAGCAGCAACCCGTCTCCATCTCCGGCAAGCGCAAGCGCAAGCTCGAAAAAAAATGGCGGAGGGACCAGAAAGAGGCTGTGGAGAAGGGCCTGATTACTATGGAAGATGTCGAAATGGCTGCTGCTGCTGATGATAATGAAGAATCTCAAGGGACGAAGAGAGGTTCAAAGAAGTTCCACATGAAGAAGAGCATCAAGCTTAAGCAAGGAAAGCACAGAGGTAAGAAGAACGGAAAATCTTCTAAGCCTGCTTCTGCTGCTCAAGCTTCAGTGGATGTAATGGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.63

Weight (kDa)

10.36

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08580
fragaria_vesca FvH4_7g33930
malus_domestica MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica Prupe.2G325600_v2.0.a1
pyrus_communis pycom01g24370 pycom07g28060
rosa_chinensis RchiOBHm_Chr1g0384121
rosa_laevigata RLG00000026070
rosa_multiflora Rmu_sc0005139.1_g000017
rosa_roxburghii Rroxscaffold_4G00276970
rosa_rugosa Rorug01G0445000 Rorug01G0445100
rosa_samantha Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana Rw1G040220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 119, 351
AfiI CCNNNNNNNGG 2 cut(s) 83, 172
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 2 cut(s) 13, 267
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 4 cut(s) 91, 142, 298, 365
AluI AGCT 4 cut(s) 91, 142, 298, 365
Alw26I GTCTC 1 cut(s) 118
AoxI GGCC 2 cut(s) 3, 187
ApeKI GCWGC 5 cut(s) 103, 218, 221, 224, 356
Asp700I GAANNNNTTC 1 cut(s) 337
AspLEI GCGC 3 cut(s) 40, 132, 138
AspS9I GGNCC 2 cut(s) 163, 187
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 5 cut(s) 115, 205, 208, 211, 343
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 5 cut(s) 104, 219, 222, 225, 357
BlsI GCNGC 5 cut(s) 105, 220, 223, 226, 358
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 187
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 231, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 172
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 83, 172
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 5 cut(s) 115, 205, 208, 211, 343
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 2 cut(s) 5, 189
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 176, 265
BslI CCNNNNNNNGG 2 cut(s) 83, 172
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 176, 265
BsnI GGCC 2 cut(s) 5, 189
BspACI CCGC 1 cut(s) 157
BspANI GGCC 2 cut(s) 5, 189
BspLI GGNNCC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 4 cut(s) 26, 50, 251, 281
BstAFI CTTAAG 1 cut(s) 299
BstC8I GCNNGC 4 cut(s) 128, 134, 140, 348
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 379
BstHHI GCGC 3 cut(s) 40, 132, 138
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 4 cut(s) 224, 310, 356, 362
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 5 cut(s) 115, 205, 208, 211, 343
BsuRI GGCC 2 cut(s) 5, 189
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 88, 375
Cac8I GCNNGC 4 cut(s) 128, 134, 140, 348
CfoI GCGC 3 cut(s) 40, 132, 138
Cfr13I GGNCC 2 cut(s) 163, 187
CviAII CATG 1 cut(s) 280
CviJI RGCY 9 cut(s) 5, 91, 142, 176, 189, 218, 298, 346, 365
CviKI_1 RGCY 9 cut(s) 5, 91, 142, 176, 189, 218, 298, 346, 365
DdeI CTNAG 1 cut(s) 342
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 26, 50, 251, 281
EarI CTCTTC 4 cut(s) 26, 50, 251, 281
EciI GGCGGA 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 119, 351
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 283
FaiI YATR 2 cut(s) 200, 281
FaqI GGGAC 2 cut(s) 176, 265
FatI CATG 1 cut(s) 279
Fnu4HI GCNGC 5 cut(s) 104, 219, 222, 225, 357
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 5 cut(s) 104, 219, 222, 225, 357
GlaI GCGC 3 cut(s) 39, 131, 137
GluI GCNGC 5 cut(s) 104, 219, 222, 225, 357
HaeIII GGCC 2 cut(s) 5, 189
HapII CCGG 1 cut(s) 123
HhaI GCGC 3 cut(s) 40, 132, 138
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 3 cut(s) 38, 130, 136
HinP1I GCGC 3 cut(s) 38, 130, 136
HindIII AAGCTT 3 cut(s) 89, 296, 363
HinfI GANTC 2 cut(s) 64, 242
HpaII CCGG 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 54, 178
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 310, 356, 362
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 3 cut(s) 38, 130, 136
LguI GCTCTTC 1 cut(s) 281
LpnPI CCDG 7 cut(s) 32, 59, 90, 136, 179, 203, 360
Lsp1109I GCAGC 5 cut(s) 115, 205, 208, 211, 343
LweI GCATC 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 10, 153, 166, 254, 311
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 337
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 224, 310, 356, 362
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 64, 242
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 5 cut(s) 105, 220, 223, 226, 358
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 163, 187
PsyI GACNNNGTC 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 5 cut(s) 104, 219, 222, 225, 357
Sau96I GGNCC 2 cut(s) 163, 187
ScrFI CCNGG 1 cut(s) 47
SetI ASST 7 cut(s) 21, 93, 144, 265, 300, 322, 367
SfaNI GCATC 1 cut(s) 300
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 3 cut(s) 246, 299, 360
SmoI CTYRAG 3 cut(s) 246, 299, 360
SsiI CCGC 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 45
TaqI TCGA 2 cut(s) 144, 210
TfiI GAWTC 2 cut(s) 64, 242
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 88, 375
TseI GCWGC 5 cut(s) 103, 218, 221, 224, 356
TspDTI ATGAA 3 cut(s) 83, 252, 296
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 88, 375
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.