Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013572

Physical Location & Seq

Genomic Coordinates Forward (+)

36416719 .. 36417829

Gene Structure 1111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1308400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGAAGTTTAATGAGGTGCAGAAGAGGAAGAGAGCGCAGAATGCGGAGAAGAAGAGAGCGGTTCATGGCGACCCAACCACCGGGAAGCTCCACAACAAGCCTCAACCCCTCTCCATCTCCGGCAAGCGCAAGCGCAAGCTCTTGAAAAAATGGCGCCGAGACCAGAACGAGGCTGTGAAGAAGGGACTGATAACTATGCAAGATGTCGAAATGGCTGCTGCCGATGCTGATGAAGGGGAAGAATCTAAAGACACCAAGACAACTTCTTCAAAGTTTCCCATGAGGAAGAAGAGTGTCAAGCTCAAACAACTACAACGCAAAGGTAAGAATAAAGGAAAATCTTCGAAGAAGGCGGCTGCTGCCACTGCCGAAGCTTCAGGGGATGCAATGCTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.83

Weight (kDa)

10.36

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08580
fragaria_vesca	FvH4_7g33930
malus_domestica	MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica	Prupe.2G325600_v2.0.a1
pyrus_communis	pycom01g24370 pycom07g28060
rosa_chinensis	RchiOBHm_Chr1g0384121
rosa_laevigata	RLG00000026070
rosa_multiflora	Rmu_sc0005139.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276970
rosa_rugosa	Rorug01G0445000 Rorug01G0445100
rosa_samantha	Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana	Rw1G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	3 cut(s)	47, 62, 356
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	157
AfiI	CCNNNNNNNGG	2 cut(s)	83, 172
AgsI	TTSAA	2 cut(s)	148, 273
AluBI	AGCT	4 cut(s)	91, 142, 304, 377
AluI	AGCT	4 cut(s)	91, 142, 304, 377
Alw26I	GTCTC	1 cut(s)	156
ApeKI	GCWGC	4 cut(s)	218, 221, 359, 362
Asp700I	GAANNNNTTC	1 cut(s)	343
AspLEI	GCGC	4 cut(s)	40, 132, 138, 159
AsuC2I	CCSGG	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	205, 208, 346, 349
BccI	CCATC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	160
BisI	GCNGC	5 cut(s)	219, 222, 357, 360, 363
BlsI	GCNGC	5 cut(s)	220, 223, 358, 361, 364
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	2 cut(s)	217, 376
Bpu14I	TTCGAA	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 172
Bse3DI	GCAATG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	83, 172
BseMI	GCAATG	1 cut(s)	396
BseXI	GCAGC	4 cut(s)	205, 208, 346, 349
BsgI	GTGCAG	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	84, 123
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	2 cut(s)	83, 172
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	49
Bso31I	GGTCTC	1 cut(s)	156
Bsp119I	TTCGAA	1 cut(s)	347
BspACI	CCGC	3 cut(s)	47, 62, 356
BspLI	GGNNCC	1 cut(s)	158
BspT104I	TTCGAA	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	157
Bst6I	CTCTTC	4 cut(s)	20, 26, 50, 287
BstACI	GRCGYC	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	128, 134, 140
BstF5I	GGATG	1 cut(s)	391
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	4 cut(s)	40, 132, 138, 159
BstMAI	GTCTC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 227, 362, 368
BstSCI	CCNGG	1 cut(s)	83
BstV1I	GCAGC	4 cut(s)	205, 208, 346, 349
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	3 cut(s)	128, 134, 140
CfoI	GCGC	4 cut(s)	40, 132, 138, 159
CviAII	CATG	2 cut(s)	68, 283
CviJI	RGCY	8 cut(s)	91, 103, 142, 176, 218, 304, 359, 377
CviKI_1	RGCY	8 cut(s)	91, 103, 142, 176, 218, 304, 359, 377
DinI	GGCGCC	1 cut(s)	158
Eam1104I	CTCTTC	4 cut(s)	20, 26, 50, 287
EarI	CTCTTC	4 cut(s)	20, 26, 50, 287
Eco31I	GGTCTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	363
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
FaeI	CATG	2 cut(s)	71, 286
FaiI	YATR	3 cut(s)	69, 200, 284
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	2 cut(s)	67, 282
Fnu4HI	GCNGC	5 cut(s)	219, 222, 357, 360, 363
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	5 cut(s)	219, 222, 357, 360, 363
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	4 cut(s)	39, 131, 137, 158
GluI	GCNGC	5 cut(s)	219, 222, 357, 360, 363
HaeII	RGCGCY	1 cut(s)	160
HapII	CCGG	2 cut(s)	84, 123
HhaI	GCGC	4 cut(s)	40, 132, 138, 159
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	2 cut(s)	71, 286
Hin6I	GCGC	4 cut(s)	38, 130, 136, 157
HinP1I	GCGC	4 cut(s)	38, 130, 136, 157
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	2 cut(s)	84, 123
Hpy188III	TCNNGA	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	178, 230, 346
HpyCH4V	TGCA	3 cut(s)	22, 202, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 227, 362, 368
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	2 cut(s)	71, 286
HspAI	GCGC	4 cut(s)	38, 130, 136, 157
KasI	GGCGCC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	4 cut(s)	97, 136, 179, 366
Lsp1109I	GCAGC	4 cut(s)	205, 208, 346, 349
LweI	GCATC	2 cut(s)	217, 376
MaeI	CTAG	1 cut(s)	395
MbiI	CCGCTC	1 cut(s)	62
Mly113I	GGCGCC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	10, 21, 114, 122, 166, 279
MroXI	GAANNNNTTC	1 cut(s)	343
MseI	TTAA	1 cut(s)	12
MspI	CCGG	2 cut(s)	84, 123
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	44, 227, 362, 368
NarI	GGCGCC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	85
NlaIII	CATG	2 cut(s)	71, 286
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	347
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	220, 223, 358, 361, 364
PluTI	GGCGCC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	5 cut(s)	219, 222, 357, 360, 363
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	6 cut(s)	21, 93, 144, 306, 328, 379
SfaNI	GCATC	2 cut(s)	217, 376
SfoI	GGCGCC	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	347
SsiI	CCGC	3 cut(s)	47, 62, 356
SspDI	GGCGCC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	83
TaqI	TCGA	2 cut(s)	210, 347
TauI	GCSGC	1 cut(s)	359
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	4 cut(s)	218, 221, 359, 362
TspDTI	ATGAA	2 cut(s)	56, 249
TspRI	CASTG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.