Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013572

Physical Location & Seq

Genomic Coordinates Forward (+)

27542572 .. 27543036

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGAAGTTTAATGAGGTGCAGAAGAGGAAGCGAGCGCAGAATGCGGAGAAGAAGAGAGCGGTTCACGGCGACGCAACCACCGGGAAGCTCCACAACAAGCCCCAACCCCTTTCCATCTCCGGCAAGCGCAAGCGCAAGCTCTTGAAAAAATGGCGCCGAATGTGGAAATGGCTGCTGCCGATGCTGATGGTAACTCCTCCTCTCAATCTCTCCGTTGAATTTTTAATCTTGATCTTAAGCTTCAAAATCATGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

88

Amino Acids

10.28

Weight (kDa)

11.68

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0013572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08580
fragaria_vesca	FvH4_7g33930
malus_domestica	MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica	Prupe.2G325600_v2.0.a1
pyrus_communis	pycom01g24370 pycom07g28060
rosa_chinensis	RchiOBHm_Chr1g0384121
rosa_laevigata	RLG00000026070
rosa_multiflora	Rmu_sc0005139.1_g000017
rosa_roxburghii	Rroxscaffold_4G00276970
rosa_rugosa	Rorug01G0445000 Rorug01G0445100
rosa_samantha	Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana	Rw1G040220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	47, 62
AcsI	RAATTY	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	157
AflII	CTTAAG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	148, 221, 247
AluBI	AGCT	3 cut(s)	91, 142, 243
AluI	AGCT	3 cut(s)	91, 142, 243
ApeKI	GCWGC	2 cut(s)	175, 178
ApoI	RAATTY	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	4 cut(s)	40, 132, 138, 159
AsuC2I	CCSGG	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	162, 165
BccI	CCATC	2 cut(s)	125, 184
BceAI	ACGGC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	85
BfoI	RGCGCY	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	238
BisI	GCNGC	2 cut(s)	176, 179
BlsI	GCNGC	2 cut(s)	177, 180
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	189, 192
BseXI	GCAGC	2 cut(s)	162, 165
BsgI	GTGCAG	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	84, 123
BsmI	GAATGC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	234
BspACI	CCGC	2 cut(s)	47, 62
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	62
BssMI	GATC	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	20, 50
BstACI	GRCGYC	1 cut(s)	157
BstAFI	CTTAAG	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	36, 128, 134, 140
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	4 cut(s)	40, 132, 138, 159
BstKTI	GATC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 184
BstSCI	CCNGG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	162, 165
Cac8I	GCNNGC	4 cut(s)	36, 128, 134, 140
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	4 cut(s)	40, 132, 138, 159
CseI	GACGC	1 cut(s)	83
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	91, 103, 142, 175, 243
CviKI_1	RGCY	5 cut(s)	91, 103, 142, 175, 243
DinI	GGCGCC	1 cut(s)	158
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	20, 50
EarI	CTCTTC	2 cut(s)	20, 50
EgeI	GGCGCC	1 cut(s)	158
EheI	GGCGCC	1 cut(s)	158
FaeI	CATG	1 cut(s)	256
FaiI	YATR	1 cut(s)	254
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	176, 179
Fsp4HI	GCNGC	2 cut(s)	176, 179
GlaI	GCGC	4 cut(s)	39, 131, 137, 158
GluI	GCNGC	2 cut(s)	176, 179
HaeII	RGCGCY	1 cut(s)	160
HapII	CCGG	2 cut(s)	84, 123
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	4 cut(s)	40, 132, 138, 159
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	4 cut(s)	38, 130, 136, 157
HinP1I	GCGC	4 cut(s)	38, 130, 136, 157
HindIII	AAGCTT	1 cut(s)	241
HpaII	CCGG	2 cut(s)	84, 123
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	145, 232, 253
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 184
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	4 cut(s)	38, 130, 136, 157
KasI	GGCGCC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	2 cut(s)	97, 136
Lsp1109I	GCAGC	2 cut(s)	162, 165
LweI	GCATC	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	236
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	234
MboII	GAAGA	3 cut(s)	37, 64, 67
MluCI	AATT	2 cut(s)	221, 259
Mly113I	GGCGCC	1 cut(s)	157
MnlI	CCTC	4 cut(s)	10, 21, 210, 213
MseI	TTAA	5 cut(s)	12, 227, 239, 258, 262
MspCI	CTTAAG	1 cut(s)	238
MspI	CCGG	2 cut(s)	84, 123
MspR9I	CCNGG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	44, 184
NarI	GGCGCC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	158
PacI	TTAATTAA	1 cut(s)	262
PagI	TCATGA	1 cut(s)	252
PctI	GAATGC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	177, 180
PluTI	GGCGCC	1 cut(s)	160
PshBI	ATTAAT	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	158
SaqAI	TTAA	5 cut(s)	12, 227, 239, 258, 262
SatI	GCNGC	2 cut(s)	176, 179
Sau3AI	GATC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	4 cut(s)	21, 93, 144, 245
SfaNI	GCATC	1 cut(s)	174
SfoI	GGCGCC	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	221, 259
SsiI	CCGC	2 cut(s)	47, 62
SspDI	GGCGCC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	83
TasI	AATT	2 cut(s)	221, 259
Tru1I	TTAA	5 cut(s)	12, 227, 239, 258, 262
Tru9I	TTAA	5 cut(s)	12, 227, 239, 258, 262
TseI	GCWGC	2 cut(s)	175, 178
TspGWI	ACGGA	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	238
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.