pycom01g24370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013572
Physical Location & Seq
Forward (+)
21316593 .. 21317508
916 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g24370.3

Sequence Viewer

Length: 402 bp
ATGGCGAAGTTCAATGAGGTGCAGAAGAGGAGGAGAGCGCAGAAAGCAGAGAAGAAGAGATCGGTTCACGGCGACCCAACCACCGGGAAGCTCCACAACAAGGCCCAACCCCTCTCCATCTCCGGCAAGCGCAAGCGCAAGCTCTTGAAAAAATGGCGCCGAGATCAGAACGAGGCTGTGAAGAAGGGACTTATAACTATGCAAGATGTCGAAATGGCTGCTGCCGATGCTGATGGAGTAGAAGAATCTAAAGACACCAAGACTTGTTGTTCAAAGTTTCCCATGAAGAAGAGGAGTCTCAAGATCAAACAACTAAAAGGCAAAGGTAAGAAGAAAGGAAAATCTTCTAAGGCGGCTGCTGCTGCCACCCCCAAAGCTTCAGTGGATGCAATGTTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.79

Weight (kDa)

10.41

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08580
fragaria_vesca FvH4_7g33930
malus_domestica MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica Prupe.2G325600_v2.0.a1
pyrus_communis pycom01g24370 pycom07g28060
rosa_chinensis RchiOBHm_Chr1g0384121
rosa_laevigata RLG00000026070
rosa_multiflora Rmu_sc0005139.1_g000017
rosa_roxburghii Rroxscaffold_4G00276970
rosa_rugosa Rorug01G0445000 Rorug01G0445100
rosa_samantha Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana Rw1G040220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 156
AciI CCGC 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 83, 100
AgsI TTSAA 3 cut(s) 13, 148, 273
AluBI AGCT 3 cut(s) 91, 142, 377
AluI AGCT 3 cut(s) 91, 142, 377
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 5 cut(s) 218, 221, 356, 359, 362
Asp700I GAANNNNTTC 1 cut(s) 343
AspLEI GCGC 4 cut(s) 40, 132, 138, 159
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 85
BanI GGYRCC 1 cut(s) 156
BbvI GCAGC 5 cut(s) 205, 208, 343, 346, 349
BccI CCATC 2 cut(s) 125, 227
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 160
BisI GCNGC 6 cut(s) 219, 222, 354, 357, 360, 363
BlsI GCNGC 6 cut(s) 220, 223, 355, 358, 361, 364
Bme1390I CCNGG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 217, 376
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 100
Bse3DI GCAATG 1 cut(s) 396
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 83, 100
BseMI GCAATG 1 cut(s) 396
BseRI GAGGAG 3 cut(s) 43, 46, 307
BseXI GCAGC 5 cut(s) 205, 208, 343, 346, 349
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 104
BshNI GGYRCC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 84, 123
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 83, 100
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 104
Bsp143I GATC 3 cut(s) 59, 163, 303
BspACI CCGC 1 cut(s) 353
BspANI GGCC 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 396
BssMI GATC 3 cut(s) 59, 163, 303
BssNI GRCGYC 1 cut(s) 157
Bst6I CTCTTC 3 cut(s) 20, 50, 284
BstACI GRCGYC 1 cut(s) 157
BstC8I GCNNGC 3 cut(s) 128, 134, 140
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 4 cut(s) 40, 132, 138, 159
BstKTI GATC 3 cut(s) 62, 166, 306
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 3 cut(s) 59, 163, 303
BstMWI GCNNNNNNNGC 4 cut(s) 44, 227, 359, 362
BstSCI CCNGG 1 cut(s) 83
BstV1I GCAGC 5 cut(s) 205, 208, 343, 346, 349
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 1 cut(s) 391
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 3 cut(s) 128, 134, 140
CfoI GCGC 4 cut(s) 40, 132, 138, 159
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 1 cut(s) 283
CviJI RGCY 7 cut(s) 91, 104, 142, 176, 218, 356, 377
CviKI_1 RGCY 7 cut(s) 91, 104, 142, 176, 218, 356, 377
DdeI CTNAG 1 cut(s) 348
DinI GGCGCC 1 cut(s) 158
DpnI GATC 3 cut(s) 61, 165, 305
DpnII GATC 3 cut(s) 59, 163, 303
Eam1104I CTCTTC 3 cut(s) 20, 50, 284
EarI CTCTTC 3 cut(s) 20, 50, 284
Eco57I CTGAAG 1 cut(s) 363
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
FaeI CATG 1 cut(s) 286
FaiI YATR 3 cut(s) 194, 200, 284
FaqI GGGAC 1 cut(s) 201
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 6 cut(s) 219, 222, 354, 357, 360, 363
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 6 cut(s) 219, 222, 354, 357, 360, 363
GlaI GCGC 4 cut(s) 39, 131, 137, 158
GluI GCNGC 6 cut(s) 219, 222, 354, 357, 360, 363
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 1 cut(s) 104
HapII CCGG 2 cut(s) 84, 123
HhaI GCGC 4 cut(s) 40, 132, 138, 159
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 4 cut(s) 38, 130, 136, 157
HinP1I GCGC 4 cut(s) 38, 130, 136, 157
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 2 cut(s) 245, 295
HpaII CCGG 2 cut(s) 84, 123
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 145, 301
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 178
HpyCH4V TGCA 3 cut(s) 22, 202, 389
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 227, 359, 362
HpyF3I CTNAG 1 cut(s) 348
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 4 cut(s) 38, 130, 136, 157
KasI GGCGCC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 59, 163, 303
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 2 cut(s) 97, 136
Lsp1109I GCAGC 5 cut(s) 205, 208, 343, 346, 349
LweI GCATC 2 cut(s) 217, 376
MalI GATC 3 cut(s) 61, 165, 305
MboI GATC 3 cut(s) 59, 163, 303
MboII GAAGA 9 cut(s) 37, 64, 67, 193, 254, 298, 301, 336, 343
Mly113I GGCGCC 1 cut(s) 157
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 6 cut(s) 10, 21, 24, 122, 166, 285
MroXI GAANNNNTTC 1 cut(s) 343
MspI CCGG 2 cut(s) 84, 123
MspR9I CCNGG 1 cut(s) 85
MwoI GCNNNNNNNGC 4 cut(s) 44, 227, 359, 362
NarI GGCGCC 1 cut(s) 157
NciI CCSGG 1 cut(s) 85
NdeII GATC 3 cut(s) 59, 163, 303
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 158
NmeAIII GCCGAG 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 6 cut(s) 220, 223, 355, 358, 361, 364
PleI GAGTC 1 cut(s) 303
PluTI GGCGCC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 303
PsiI TTATAA 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 103
SatI GCNGC 6 cut(s) 219, 222, 354, 357, 360, 363
Sau3AI GATC 3 cut(s) 59, 163, 303
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 85
SetI ASST 5 cut(s) 21, 93, 144, 328, 379
SfaNI GCATC 2 cut(s) 217, 376
SfoI GGCGCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SsiI CCGC 1 cut(s) 353
SspDI GGCGCC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 1 cut(s) 210
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 245
TscAI CASTG 1 cut(s) 387
TseI GCWGC 5 cut(s) 218, 221, 356, 359, 362
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmnI GAANNNNTTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.