FvH4_7g33930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013572
Physical Location & Seq
Forward (+)
24023720 .. 24024827
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33930.t1

Sequence Viewer

Length: 384 bp
ATGGCGAAGTTTAACGAGGTACAGAAGAAGAAGAGAGCGCAGAACCAGGAGAATAAGAGAAGGATTCACGGCGACCCAGTCAGTGGAAAGCTCCATCTGAAGCAGCAACCCGTCTCCATCTCCGGCAAACGCAAGCGCAAGCTCGAGAAAAAATGGCGCAGGGACCAGAAAGAGGCGGTGGAGAAGGGCCTGATTACTATGGAAGATGTCGAAATGGCTGCTGCTGATACCGAAGAATCTGAAGGGACGAAGAAAGGTTCTAAGAAGTTCCACATGAAGAAGAGCGTCAGGCTTAAGCAAGCAAAGCACAAAGGAAAGAAGAAAGGAAAGTCTTCTAAGCCTGCTTCTGCTTCTCAAGCTTCAGTGGATGTAATGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.42

Weight (kDa)

10.31

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08580
fragaria_vesca FvH4_7g33930
malus_domestica MD01G1235600.v1.1 MD07G1308400.v1.1
prunus_persica Prupe.2G325600_v2.0.a1
pyrus_communis pycom01g24370 pycom07g28060
rosa_chinensis RchiOBHm_Chr1g0384121
rosa_laevigata RLG00000026070
rosa_multiflora Rmu_sc0005139.1_g000017
rosa_roxburghii Rroxscaffold_4G00276970
rosa_rugosa Rorug01G0445000 Rorug01G0445100
rosa_samantha Rh1AG470500 Rh1BG427900 Rh1CG440600 Rh1DG460900
rosa_wichuraiana Rw1G040220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 1 cut(s) 176
AcuI CTGAAG 3 cut(s) 119, 261, 345
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 83, 172
AflII CTTAAG 1 cut(s) 293
AjnI CCWGG 1 cut(s) 45
AluBI AGCT 3 cut(s) 91, 142, 359
AluI AGCT 3 cut(s) 91, 142, 359
Alw26I GTCTC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 3 cut(s) 103, 218, 221
Asp700I GAANNNNTTC 1 cut(s) 331
AspLEI GCGC 3 cut(s) 40, 138, 159
AspS9I GGNCC 2 cut(s) 163, 187
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 115, 205, 208
BccI CCATC 2 cut(s) 102, 125
BceAI ACGGC 1 cut(s) 85
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 118
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 3 cut(s) 104, 219, 222
BlsI GCNGC 3 cut(s) 105, 220, 223
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 163, 187
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 172
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 83, 172
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 3 cut(s) 115, 205, 208
BshFI GGCC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 176, 259
BslI CCNNNNNNNGG 2 cut(s) 83, 172
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 176, 259
BsnI GGCC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 143
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 275
BspTI CTTAAG 1 cut(s) 293
BsrI ACTGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 47
Bst6I CTCTTC 2 cut(s) 26, 275
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 4 cut(s) 134, 140, 300, 342
BstDEI CTNAG 2 cut(s) 261, 336
BstF5I GGATG 1 cut(s) 373
BstHHI GCGC 3 cut(s) 40, 138, 159
BstMAI GTCTC 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 304, 356
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 115, 205, 208
BstV2I GAAGAC 1 cut(s) 324
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 88, 369
Cac8I GCNNGC 4 cut(s) 134, 140, 300, 342
CfoI GCGC 3 cut(s) 40, 138, 159
Cfr13I GGNCC 2 cut(s) 163, 187
CseI GACGC 1 cut(s) 274
Csp6I GTAC 1 cut(s) 20
CviAII CATG 1 cut(s) 274
CviJI RGCY 7 cut(s) 91, 142, 189, 218, 292, 340, 359
CviKI_1 RGCY 7 cut(s) 91, 142, 189, 218, 292, 340, 359
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 2 cut(s) 261, 336
Eam1104I CTCTTC 2 cut(s) 26, 275
EarI CTCTTC 2 cut(s) 26, 275
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 119, 261, 345
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 45
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 277
FaiI YATR 2 cut(s) 200, 275
FaqI GGGAC 2 cut(s) 176, 259
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 104, 219, 222
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 104, 219, 222
GlaI GCGC 3 cut(s) 39, 137, 158
GluI GCNGC 3 cut(s) 104, 219, 222
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 274
HhaI GCGC 3 cut(s) 40, 138, 159
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 3 cut(s) 38, 136, 157
HinP1I GCGC 3 cut(s) 38, 136, 157
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 2 cut(s) 64, 236
HpaII CCGG 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 99, 241
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 54, 178, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 356
HpyF3I CTNAG 2 cut(s) 261, 336
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 3 cut(s) 38, 136, 157
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 9 cut(s) 32, 59, 90, 136, 145, 179, 203, 274, 354
Lsp1109I GCAGC 3 cut(s) 115, 205, 208
MnlI CCTC 2 cut(s) 10, 166
MroXI GAANNNNTTC 1 cut(s) 331
MseI TTAA 2 cut(s) 12, 294
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 304, 356
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 64, 236
PflFI GACNNNGTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 83
PkrI GCNGC 3 cut(s) 105, 220, 223
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 163, 187
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 12, 294
SatI GCNGC 3 cut(s) 104, 219, 222
Sau96I GGNCC 2 cut(s) 163, 187
ScrFI CCNGG 1 cut(s) 47
SetI ASST 5 cut(s) 21, 93, 144, 259, 361
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 3 cut(s) 143, 293, 354
SmoI CTYRAG 3 cut(s) 143, 293, 354
SsiI CCGC 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 45
TaqI TCGA 2 cut(s) 144, 210
TfiI GAWTC 2 cut(s) 64, 236
Tru1I TTAA 2 cut(s) 12, 294
Tru9I TTAA 2 cut(s) 12, 294
TscAI CASTG 2 cut(s) 88, 369
TseI GCWGC 3 cut(s) 103, 218, 221
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 88, 369
Tth111I GACNNNGTC 1 cut(s) 77
Van91I CCANNNNNTGG 1 cut(s) 83
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 143
XmnI GAANNNNTTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.