AT1G08830

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009814
Physical Location & Seq
Forward (+)
2827060 .. 2829315
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08830.2

Sequence Viewer

Length: 459 bp
ATGGCGAAAGGAGTTGCAGTTTTGAACAGCAGTGAGGGTGTTACGGGGACTATCTTTTTCACCCAGGAAGGCGATGGTGTGACCACTGTGAGTGGAACAGTTTCTGGCCTTAAGCCTGGTCTTCATGGTTTCCATGTCCATGCTCTTGGTGACACCACTAACGGTTGCATGTCTACTGGTCCACATTTCAACCCCGATGGTAAAACACACGGTGCCCCTGAGGATGCTAATCGACATGCTGGTGATCTAGGAAACATCACTGTTGGAGATGATGGAACTGCCACCTTCACAATCACTGATTGCCAGATTCCTCTTACTGGACCAAACTCTATTGTTGGTAGGGCTGTTGTTGTCCATGCAGACCCTGATGACCTCGGAAAGGGAGGCCATGAACTCAGCCTGGCTACTGGAAACGCAGGCGGCCGTGTTGCTTGCGGCATCATTGGTCTCCAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

152

Amino Acids

15.1

Weight (kDa)

5.24

Isoelectric Point (pI)

14.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 14 - 148 1.2e-51 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 173
AciI CCGC 2 cut(s) 420, 435
AcoI YGGCCR 1 cut(s) 421
AdeI CACNNNGTG 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 317, 379
AflII CTTAAG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 25, 190
AjnI CCWGG 4 cut(s) 63, 115, 399, 450
Alw26I GTCTC 1 cut(s) 452
AlwNI CAGNNNCTG 2 cut(s) 104, 365
AoxI GGCC 3 cut(s) 106, 385, 421
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 179, 320
AsuHPI GGTGA 3 cut(s) 52, 161, 254
AvaII GGWCC 2 cut(s) 179, 320
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 113
BccI CCATC 3 cut(s) 68, 191, 266
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 4 cut(s) 65, 117, 401, 452
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 1 cut(s) 248
BfrI CTTAAG 1 cut(s) 110
BisI GCNGC 2 cut(s) 421, 436
BlsI GCNGC 2 cut(s) 422, 437
Bme1390I CCNGG 4 cut(s) 65, 117, 401, 452
Bme18I GGWCC 2 cut(s) 179, 320
BmgT120I GGNCC 2 cut(s) 179, 320
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 4 cut(s) 65, 117, 401, 452
BmsI GCATC 2 cut(s) 214, 447
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 3 cut(s) 63, 373, 451
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 379
Bse1I ACTGG 3 cut(s) 181, 322, 412
Bse21I CCTNAGG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 4 cut(s) 65, 117, 401, 452
BseDI CCNNGG 3 cut(s) 63, 373, 451
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 317, 379
BseMII CTCAG 2 cut(s) 210, 409
BseNI ACTGG 3 cut(s) 181, 322, 412
BseSI GKGCMC 1 cut(s) 217
BseX3I CGGCCG 1 cut(s) 421
Bsh1285I CGRYCG 1 cut(s) 424
BshFI GGCC 3 cut(s) 108, 387, 423
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 424
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 317, 379
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 3 cut(s) 108, 387, 423
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 2 cut(s) 420, 435
BspANI GGCC 3 cut(s) 108, 387, 423
BspCNI CTCAG 2 cut(s) 211, 408
BspLI GGNNCC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 212
BspTI CTTAAG 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 452
BsrI ACTGG 3 cut(s) 181, 322, 412
BssECI CCNNGG 3 cut(s) 63, 373, 451
BssMI GATC 1 cut(s) 244
Bst2UI CCWGG 4 cut(s) 65, 117, 401, 452
Bst4CI ACNGT 5 cut(s) 88, 100, 164, 212, 262
BstAFI CTTAAG 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 418, 433
BstDEI CTNAG 2 cut(s) 219, 395
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 1 cut(s) 244
BstMCI CGRYCG 1 cut(s) 424
BstNI CCWGG 4 cut(s) 65, 117, 401, 452
BstNSI RCATGY 2 cut(s) 172, 239
BstSCI CCNGG 4 cut(s) 63, 115, 399, 450
BstSLI GKGCMC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 146
BstZI CGGCCG 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 108, 387, 423
BtgZI GCGATG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 4 cut(s) 37, 84, 258, 294
Cac8I GCNNGC 2 cut(s) 418, 433
CaiI CAGNNNCTG 2 cut(s) 104, 365
Cfr13I GGNCC 2 cut(s) 179, 320
CviAII CATG 7 cut(s) 125, 134, 140, 169, 236, 356, 389
CviJI RGCY 8 cut(s) 108, 115, 344, 387, 399, 404, 423, 456
CviKI_1 RGCY 8 cut(s) 108, 115, 344, 387, 399, 404, 423, 456
DdeI CTNAG 2 cut(s) 219, 395
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 421
EagI CGGCCG 1 cut(s) 421
EclXI CGGCCG 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 2 cut(s) 179, 320
Eco52I CGGCCG 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 4 cut(s) 63, 115, 399, 450
FaeI CATG 7 cut(s) 128, 137, 143, 172, 239, 359, 392
FaiI YATR 7 cut(s) 126, 135, 141, 170, 237, 357, 390
FaqI GGGAC 1 cut(s) 61
FatI CATG 7 cut(s) 124, 133, 139, 168, 235, 355, 388
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 421, 436
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 2 cut(s) 421, 436
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 421, 436
GsuI CTGGAG 1 cut(s) 434
HaeIII GGCC 3 cut(s) 108, 387, 423
Hin1II CATG 7 cut(s) 128, 137, 143, 172, 239, 359, 392
HinfI GANTC 1 cut(s) 307
HphI GGTGA 3 cut(s) 52, 161, 254
Hpy166II GTNNAC 2 cut(s) 174, 182
Hpy188I TCNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 174, 182
HpyAV CCTTC 2 cut(s) 62, 295
HpyCH4III ACNGT 5 cut(s) 88, 100, 164, 212, 262
HpyCH4V TGCA 3 cut(s) 17, 168, 359
HpyF3I CTNAG 2 cut(s) 219, 395
Hsp92II CATG 7 cut(s) 128, 137, 143, 172, 239, 359, 392
Kzo9I GATC 1 cut(s) 244
LweI GCATC 2 cut(s) 214, 447
MaeI CTAG 1 cut(s) 248
MaeIII GTNAC 3 cut(s) 40, 79, 149
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 5 cut(s) 28, 214, 321, 377, 383
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 2 cut(s) 138, 240
MspCI CTTAAG 1 cut(s) 110
MspR9I CCNGG 4 cut(s) 65, 117, 401, 452
MvaI CCWGG 4 cut(s) 65, 117, 401, 452
NdeII GATC 1 cut(s) 244
NlaIII CATG 7 cut(s) 128, 137, 143, 172, 239, 359, 392
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 79, 149
NspI RCATGY 2 cut(s) 172, 239
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 422, 437
Psp6I CCWGG 4 cut(s) 63, 115, 399, 450
PspGI CCWGG 4 cut(s) 63, 115, 399, 450
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 179, 320
PstNI CAGNNNCTG 2 cut(s) 104, 365
RseI CAYNNNNRTG 2 cut(s) 138, 240
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 421, 436
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 2 cut(s) 179, 320
ScrFI CCNGG 4 cut(s) 65, 117, 401, 452
SduI GDGCHC 1 cut(s) 217
SetI ASST 2 cut(s) 287, 375
SfaNI GCATC 2 cut(s) 214, 447
SinI GGWCC 2 cut(s) 179, 320
SmiMI CAYNNNNRTG 2 cut(s) 138, 240
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 2 cut(s) 420, 435
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 4 cut(s) 63, 115, 399, 450
TaaI ACNGT 5 cut(s) 88, 100, 164, 212, 262
TaqI TCGA 1 cut(s) 232
TauI GCSGC 2 cut(s) 423, 438
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 4 cut(s) 37, 91, 265, 301
TseFI GTSAC 2 cut(s) 79, 149
Tsp45I GTSAC 2 cut(s) 79, 149
TspDTI ATGAA 2 cut(s) 113, 405
TspRI CASTG 4 cut(s) 37, 91, 265, 301
Vha464I CTTAAG 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 179, 320
XagI CCTNNNNNAGG 1 cut(s) 377
XceI RCATGY 2 cut(s) 172, 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.