FvH4_6g04231

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009814
Physical Location & Seq
Forward (+)
2292486 .. 2295505
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04231.t2

Sequence Viewer

Length: 459 bp
ATGGCAAAGGGCGTTGCTGTGCTTTGCTCCAGTGAGGGTGTTGCTGGAACTATCCTCTTCACCCAAGAGGGAGATGGCCCAACTACTGTGACCGGAAACATTACTGGCCTCAAGCCTGGGCTTCATGGTTTCCATGTTCATGCTCTTGGGGACACCACAAATGGTTGCATGTCAACTGGACCACACTTCAATCCTGCTGGCAAAGAGCATGGTGCTCCTGAAGATGAGAATCGTCATGCTGGTGATCTTGGAAATATCACTGTTGGGGATGATGGAAAGGCTTGCTTCACAATTGTTGACAAGCAGATTCCTCTCACTGGACCACACTCTATCATTGGTAGGGCTGTTGTTGTCCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGTGGCAGGATAGCTTGTGGTATCATTGGTCTGCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

153

Amino Acids

15.24

Weight (kDa)

5.77

Isoelectric Point (pI)

23.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 14 - 148 1.3e-51 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 394, 431
AluI AGCT 2 cut(s) 394, 431
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 354
AoxI GGCC 2 cut(s) 76, 106
AspS9I GGNCC 3 cut(s) 77, 179, 320
AsuHPI GGTGA 2 cut(s) 52, 254
AvaII GGWCC 2 cut(s) 179, 320
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 2 cut(s) 68, 266
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 449
BlpI GCTNAGC 1 cut(s) 395
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 179, 320
BmgT120I GGNCC 3 cut(s) 77, 179, 320
BmrFI CCNGG 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 116, 355
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 5 cut(s) 30, 109, 181, 322, 412
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 116, 355
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 5 cut(s) 30, 109, 181, 322, 412
BshFI GGCC 2 cut(s) 78, 108
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 78, 108
Bso31I GGTCTC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 244, 370
Bsp1720I GCTNAGC 1 cut(s) 395
Bsp19I CCATGG 1 cut(s) 355
BspANI GGCC 2 cut(s) 78, 108
BspMAI CTGCAG 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 354
BsrI ACTGG 5 cut(s) 30, 109, 181, 322, 412
BssECI CCNNGG 2 cut(s) 116, 355
BssMI GATC 2 cut(s) 244, 370
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 88, 262
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 199, 283
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 2 cut(s) 247, 373
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 2 cut(s) 244, 370
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 449
BsuRI GGCC 2 cut(s) 78, 108
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 4 cut(s) 37, 258, 315, 405
Cac8I GCNNGC 2 cut(s) 199, 283
Cfr13I GGNCC 3 cut(s) 77, 179, 320
CviAII CATG 8 cut(s) 125, 134, 140, 169, 209, 236, 356, 389
CviJI RGCY 8 cut(s) 78, 108, 115, 121, 281, 344, 394, 431
CviKI_1 RGCY 8 cut(s) 78, 108, 115, 121, 281, 344, 394, 431
DdeI CTNAG 1 cut(s) 395
DpnI GATC 2 cut(s) 246, 372
DpnII GATC 2 cut(s) 244, 370
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 179, 320
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
FaiI YATR 8 cut(s) 126, 135, 141, 170, 210, 237, 357, 390
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 164
FatI CATG 8 cut(s) 124, 133, 139, 168, 208, 235, 355, 388
FokI GGATG 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 2 cut(s) 78, 108
HapII CCGG 1 cut(s) 93
Hin1II CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
HincII GTYRAC 2 cut(s) 174, 298
HindII GTYRAC 2 cut(s) 174, 298
HinfI GANTC 2 cut(s) 229, 307
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 52, 254
Hpy166II GTNNAC 3 cut(s) 174, 298, 386
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 3 cut(s) 174, 298, 386
HpyCH4III ACNGT 2 cut(s) 88, 262
HpyCH4V TGCA 2 cut(s) 168, 451
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
Kzo9I GATC 2 cut(s) 244, 370
LmnI GCTCC 2 cut(s) 32, 220
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 246, 372
MboI GATC 2 cut(s) 244, 370
MboII GAAGA 2 cut(s) 49, 233
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 291
MnlI CCTC 5 cut(s) 28, 61, 65, 119, 321
MslI CAYNNNNRTG 2 cut(s) 138, 240
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 355
NdeII GATC 2 cut(s) 244, 370
NlaIII CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 172
PfeI GAWTC 2 cut(s) 229, 307
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 3 cut(s) 77, 179, 320
PstI CTGCAG 1 cut(s) 453
RseI CAYNNNNRTG 2 cut(s) 138, 240
Sau3AI GATC 2 cut(s) 244, 370
Sau96I GGNCC 3 cut(s) 77, 179, 320
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 217
SetI ASST 2 cut(s) 396, 433
SfcI CTRYAG 1 cut(s) 449
SinI GGWCC 2 cut(s) 179, 320
SmiMI CAYNNNNRTG 2 cut(s) 138, 240
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 88, 262
TasI AATT 1 cut(s) 291
TfiI GAWTC 2 cut(s) 229, 307
TscAI CASTG 4 cut(s) 37, 265, 322, 412
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 113, 128
TspRI CASTG 4 cut(s) 37, 265, 322, 412
VpaK11BI GGWCC 2 cut(s) 179, 320
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.