Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009814

Physical Location & Seq

Genomic Coordinates Reverse (-)

29107849 .. 29111189

Gene Structure 3341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G335000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTGAAGGGCGTTGCTGTTCTTGGCTCCAGTGAGGGTGTTAAAGGAACCATCAACTTCACCCAAGAGGGAGATGGCCCAACTACTGTGACTGGAAGTATTTCTGGCCTCAAGCCTGGGCTTCATGGTTTCCATGTCCATGAATTTGGAGACACAACCAACGGTTGCTTGTCAACTGGACCGCATTTCAATCCTGATGGCAAGCACCATGGTGCCCCTGAAGACGAGATTCGCCATGCCGGTGATCTTGGAAATATCACTGTTGGGGACGATGGAACTGCAAACTTCACAATTATTGACAAGCAGATTCCTCTCGCTGGACCACAATCAATCATTGGTAGGGCGGTTGTTGTCCATGCAGACCCTGATGACCTGGGCAAGGGTGGACATGAGCTTAGCAAAAGCACTGGAAATGCTGGTGGCAGGACTGCTTGTGGTATTATTGGTCTCCAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

153

Amino Acids

15.38

Weight (kDa)

5.6

Isoelectric Point (pI)

16.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08830 AT1G08830
fragaria_vesca	FvH4_6g04231 FvH4_6g04231
malus_domestica	MD00G1051500.v1.1 MD12G1231600.v1.1 MD12G1231900.v1.1
prunus_persica	Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452901
rosa_laevigata	RLG00000025561
rosa_multiflora	Rmu_sc0002823.1_g000007
rosa_roxburghii	Rroxscaffold_6G00429910
rosa_rugosa	Rorug02G0643500
rosa_samantha	Rh3AG046300 Rh3BG048800 Rh3CG047400 Rh3DG048400
rosa_wichuraiana	Rw3G003640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	212
AciI	CCGC	2 cut(s)	182, 344
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	317, 379
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	115, 372
AleI	CACNNNNGTG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	144, 452
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	76, 106
ApoI	RAATTY	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	77, 179, 320
AsuHPI	GGTGA	3 cut(s)	16, 52, 254
AvaII	GGWCC	2 cut(s)	179, 320
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	228
BccI	CCATC	4 cut(s)	59, 68, 191, 266
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	2 cut(s)	117, 374
BcoDI	GTCTC	2 cut(s)	144, 452
BlpI	GCTNAGC	1 cut(s)	395
Bme1390I	CCNGG	2 cut(s)	117, 374
Bme18I	GGWCC	2 cut(s)	179, 320
BmgT120I	GGNCC	3 cut(s)	77, 179, 320
BmiI	GGNNCC	3 cut(s)	28, 49, 214
BmrFI	CCNGG	2 cut(s)	117, 374
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	13
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	116, 208, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 379
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	4 cut(s)	30, 97, 181, 412
BseBI	CCWGG	2 cut(s)	117, 374
BseDI	CCNNGG	3 cut(s)	116, 208, 373
BseLI	CCNNNNNNNGG	2 cut(s)	317, 379
BseNI	ACTGG	4 cut(s)	30, 97, 181, 412
BseSI	GKGCMC	1 cut(s)	217
BshFI	GGCC	2 cut(s)	78, 108
BshNI	GGYRCC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	317, 379
BsmAI	GTCTC	2 cut(s)	144, 452
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	78, 108
Bso31I	GGTCTC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	2 cut(s)	182, 344
BspANI	GGCC	2 cut(s)	78, 108
BspLI	GGNNCC	3 cut(s)	28, 49, 214
BspT107I	GGYRCC	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	452
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	4 cut(s)	30, 97, 181, 412
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	3 cut(s)	116, 208, 373
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	117, 374
Bst4CI	ACNGT	3 cut(s)	88, 164, 262
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	1 cut(s)	208
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	144, 452
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	117, 374
BstSCI	CCNGG	2 cut(s)	115, 372
BstSLI	GKGCMC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	78, 108
BtgI	CCRYGG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	37, 258, 405
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	77, 179, 320
CviAII	CATG	7 cut(s)	125, 134, 140, 209, 236, 356, 389
CviJI	RGCY	6 cut(s)	27, 78, 108, 115, 121, 394
CviKI_1	RGCY	6 cut(s)	27, 78, 108, 115, 121, 394
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	2 cut(s)	179, 320
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	115, 372
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	7 cut(s)	128, 137, 143, 212, 239, 359, 392
FaiI	YATR	7 cut(s)	126, 135, 141, 210, 237, 357, 390
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	7 cut(s)	124, 133, 139, 208, 235, 355, 388
GsuI	CTGGAG	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	78, 108
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	7 cut(s)	128, 137, 143, 212, 239, 359, 392
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	229, 307
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	16, 52, 254
Hpy166II	GTNNAC	2 cut(s)	174, 386
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	2 cut(s)	174, 386
HpyCH4III	ACNGT	3 cut(s)	88, 164, 262
HpyCH4V	TGCA	2 cut(s)	281, 359
HpyF3I	CTNAG	1 cut(s)	395
Hsp92II	CATG	7 cut(s)	128, 137, 143, 212, 239, 359, 392
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	2 cut(s)	143, 291
MnlI	CCTC	4 cut(s)	28, 61, 119, 321
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	3 cut(s)	138, 210, 240
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	117, 374
MvaI	CCWGG	2 cut(s)	117, 374
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	7 cut(s)	128, 137, 143, 212, 239, 359, 392
NlaIV	GGNNCC	3 cut(s)	28, 49, 214
NmuCI	GTSAC	1 cut(s)	88
OliI	CACNNNNGTG	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	229, 307
Psp6I	CCWGG	2 cut(s)	115, 372
PspGI	CCWGG	2 cut(s)	115, 372
PspN4I	GGNNCC	3 cut(s)	28, 49, 214
PspPI	GGNCC	3 cut(s)	77, 179, 320
PstNI	CAGNNNCTG	1 cut(s)	365
RseI	CAYNNNNRTG	3 cut(s)	138, 210, 240
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	3 cut(s)	77, 179, 320
ScrFI	CCNGG	2 cut(s)	117, 374
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	2 cut(s)	375, 396
SinI	GGWCC	2 cut(s)	179, 320
SmiMI	CAYNNNNRTG	3 cut(s)	138, 210, 240
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	143, 291
SsiI	CCGC	2 cut(s)	182, 344
StyD4I	CCNGG	2 cut(s)	115, 372
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	88, 164, 262
TasI	AATT	2 cut(s)	143, 291
TfiI	GAWTC	2 cut(s)	229, 307
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	37, 265, 412
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	113, 156
TspRI	CASTG	3 cut(s)	37, 265, 412
VpaK11BI	GGWCC	2 cut(s)	179, 320
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.