Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002823.1

Orthogroup ID

OG0009814

Physical Location & Seq

Genomic Coordinates Reverse (-)

35063 .. 36585

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002823.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggcgaagggcgttgctgtactttgctccagtgagggtgttaagggaactatcctcttcacacaagagggagatggcccaactactgtgactggaaacgtttctggcctcaagcctgggcttcatggttttcatgttcatgctcttggtgacacaacaaacggttgcatgtcaactggaccacacttcaatcctgctggcaaagagcatggtgctcctgaagatgagcatcgtcatgctggtgatcttggaaatattactgttggggatgatggaactgctaccttcacaattgttgacaagcagattcctctcaccggaccacactctatcattggtagggcggttgttgtccatggagaccctgatgaccttggcaagggtggacatgagcttagcaaatccactggaaatgctggaggcaggatagcttgtggtattattggtctccaaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

152

Amino Acids

15.26

Weight (kDa)

5.86

Isoelectric Point (pI)

17.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08830 AT1G08830
fragaria_vesca	FvH4_6g04231 FvH4_6g04231
malus_domestica	MD00G1051500.v1.1 MD12G1231600.v1.1 MD12G1231900.v1.1
prunus_persica	Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452901
rosa_laevigata	RLG00000025561
rosa_multiflora	Rmu_sc0002823.1_g000007
rosa_roxburghii	Rroxscaffold_6G00429910
rosa_rugosa	Rorug02G0643500
rosa_samantha	Rh3AG046300 Rh3BG048800 Rh3CG047400 Rh3DG048400
rosa_wichuraiana	Rw3G003640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	344
AclI	AACGTT	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	317, 379
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	394, 431
AluI	AGCT	2 cut(s)	394, 431
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	354, 452
AoxI	GGCC	2 cut(s)	76, 106
Asp700I	GAANNNNTTC	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	77, 179, 320
AsuHPI	GGTGA	3 cut(s)	161, 254, 307
AvaII	GGWCC	2 cut(s)	179, 320
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	2 cut(s)	68, 266
BciT130I	CCWGG	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	354, 452
BlpI	GCTNAGC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	179, 320
BmgT120I	GGNCC	3 cut(s)	77, 179, 320
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	238
BpmI	CTGGAG	2 cut(s)	13, 438
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	2 cut(s)	354, 452
BsaJI	CCNNGG	4 cut(s)	116, 355, 373, 451
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 379
Bse1I	ACTGG	4 cut(s)	30, 97, 181, 412
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	4 cut(s)	116, 355, 373, 451
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	317, 379
BseNI	ACTGG	4 cut(s)	30, 97, 181, 412
BshFI	GGCC	2 cut(s)	78, 108
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	317, 379
BsmAI	GTCTC	2 cut(s)	354, 452
BsnI	GGCC	2 cut(s)	78, 108
Bso31I	GGTCTC	2 cut(s)	354, 452
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	2 cut(s)	78, 108
BspTNI	GGTCTC	2 cut(s)	354, 452
BsrI	ACTGG	4 cut(s)	30, 97, 181, 412
BssECI	CCNNGG	4 cut(s)	116, 355, 373, 451
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	3 cut(s)	355, 373, 451
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	88, 164, 262
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	1 cut(s)	355
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	354, 452
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	78, 108
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	37, 405
Cac8I	GCNNGC	1 cut(s)	199
Cfr13I	GGNCC	3 cut(s)	77, 179, 320
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	8 cut(s)	125, 134, 140, 169, 209, 236, 356, 389
CviJI	RGCY	6 cut(s)	78, 108, 115, 121, 394, 431
CviKI_1	RGCY	6 cut(s)	78, 108, 115, 121, 394, 431
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	3 cut(s)	355, 373, 451
Eco31I	GGTCTC	2 cut(s)	354, 452
Eco47I	GGWCC	2 cut(s)	179, 320
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	3 cut(s)	355, 373, 451
ErhI	CCWWGG	3 cut(s)	355, 373, 451
FaeI	CATG	8 cut(s)	128, 137, 143, 172, 212, 239, 359, 392
FaiI	YATR	8 cut(s)	126, 135, 141, 170, 210, 237, 357, 390
FatI	CATG	8 cut(s)	124, 133, 139, 168, 208, 235, 355, 388
FokI	GGATG	1 cut(s)	281
GsuI	CTGGAG	2 cut(s)	13, 438
HaeIII	GGCC	2 cut(s)	78, 108
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	8 cut(s)	128, 137, 143, 172, 212, 239, 359, 392
HincII	GTYRAC	2 cut(s)	174, 298
HindII	GTYRAC	2 cut(s)	174, 298
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	3 cut(s)	161, 254, 307
Hpy166II	GTNNAC	3 cut(s)	174, 298, 386
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	3 cut(s)	174, 298, 386
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	3 cut(s)	88, 164, 262
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	168
HpyF3I	CTNAG	1 cut(s)	395
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	8 cut(s)	128, 137, 143, 172, 212, 239, 359, 392
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	32, 220
LweI	GCATC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	88, 149
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	49, 233
MfeI	CAATTG	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	291
MnlI	CCTC	6 cut(s)	28, 61, 65, 119, 321, 413
MroXI	GAANNNNTTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	3 cut(s)	138, 234, 240
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	8 cut(s)	128, 137, 143, 172, 212, 239, 359, 392
NmuCI	GTSAC	2 cut(s)	88, 149
NspI	RCATGY	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	307
Psp1406I	AACGTT	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspPI	GGNCC	3 cut(s)	77, 179, 320
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	3 cut(s)	138, 234, 240
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	3 cut(s)	77, 179, 320
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	102, 287, 375, 396, 433
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	2 cut(s)	179, 320
SmiMI	CAYNNNNRTG	3 cut(s)	138, 234, 240
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	291
SsiI	CCGC	1 cut(s)	344
SspI	AATATT	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	3 cut(s)	355, 373, 451
TaaI	ACNGT	3 cut(s)	88, 164, 262
TaiI	ACGT	1 cut(s)	102
TasI	AATT	1 cut(s)	291
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	2 cut(s)	37, 412
TseFI	GTSAC	2 cut(s)	88, 149
Tsp45I	GTSAC	2 cut(s)	88, 149
TspDTI	ATGAA	3 cut(s)	113, 122, 128
TspRI	CASTG	2 cut(s)	37, 412
VpaK11BI	GGWCC	2 cut(s)	179, 320
XagI	CCTNNNNNAGG	1 cut(s)	377
XceI	RCATGY	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.