Rroxscaffold_6G00429910

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0009814
Physical Location & Seq
Forward (+)
50069742 .. 50072738
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429910.1

Sequence Viewer

Length: 567 bp
ATGGCGAAGGGTGTTGCTGTACTTTGCTCCAGTGAGGGTGTTACGGGAACTATCCTCTTCACCCAAGAGGGAGATGGCCCAACTACTGTGACTGGAAACGTTTCTGGCCTCAAGCCTGGGCTTCATGGTTTCCATGTTCATGCTCTTGGTGACACAACAAACGGTTGCATGTCAACTGGACCACACTTCAATCCTGCTGGCAAAGAGCATGGTGCTCCTGAAGATGAGAATCGTCATGCTGGTGATCTTGGAAATATCATTGTTGGGGATGATGGAACTGCTACCTTCACAATTGTTGACAAGCAGATTCCTCTCACTGGACCACATTCTATCATTGGTAGGGCGGTTGTTGTCCATGGAGACCCTGATGACCTTGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGAGGCAGGGTAGCTTGTGGTAAGCTAATATGCTTAGCTACATTAAATAAAATCCTTGCATTACAGTATTATTGGTCTCCAAGGATGAACTGGACCAGGGAGCGAAACACAGGCACCTCAGTTGAATCAAAGCTTGAGATATTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

188

Amino Acids

19.53

Weight (kDa)

6.11

Isoelectric Point (pI)

20.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 14 - 146 8.6e-51 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 530
AciI CCGC 1 cut(s) 344
AclI AACGTT 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 317, 379
AgsI TTSAA 2 cut(s) 190, 542
AjnI CCWGG 2 cut(s) 115, 512
AluBI AGCT 5 cut(s) 394, 431, 442, 455, 550
AluI AGCT 5 cut(s) 394, 431, 442, 455, 550
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 354, 498
AoxI GGCC 2 cut(s) 76, 106
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 4 cut(s) 77, 179, 320, 510
AsuHPI GGTGA 3 cut(s) 52, 161, 254
AvaII GGWCC 3 cut(s) 179, 320, 510
BanI GGYRCC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 217
BccI CCATC 2 cut(s) 68, 266
BciT130I CCWGG 2 cut(s) 117, 514
BcoDI GTCTC 2 cut(s) 354, 498
BlpI GCTNAGC 2 cut(s) 395, 451
Bme1390I CCNGG 2 cut(s) 117, 514
Bme18I GGWCC 3 cut(s) 179, 320, 510
BmgT120I GGNCC 4 cut(s) 77, 179, 320, 510
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 2 cut(s) 117, 514
BpmI CTGGAG 2 cut(s) 13, 438
Bpu1102I GCTNAGC 2 cut(s) 395, 451
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 354, 498
BsaJI CCNNGG 5 cut(s) 116, 355, 373, 497, 513
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 379
Bse1I ACTGG 6 cut(s) 30, 97, 181, 322, 412, 512
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 2 cut(s) 117, 514
BseDI CCNNGG 5 cut(s) 116, 355, 373, 497, 513
BseGI GGATG 2 cut(s) 274, 507
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 317, 379
BseMII CTCAG 1 cut(s) 549
BseNI ACTGG 6 cut(s) 30, 97, 181, 322, 412, 512
BshFI GGCC 2 cut(s) 78, 108
BshNI GGYRCC 1 cut(s) 530
BsiHKAI GWGCWC 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 317, 379
BsmAI GTCTC 2 cut(s) 354, 498
BsnI GGCC 2 cut(s) 78, 108
Bso31I GGTCTC 2 cut(s) 354, 498
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 244
Bsp1720I GCTNAGC 2 cut(s) 395, 451
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 1 cut(s) 344
BspANI GGCC 2 cut(s) 78, 108
BspCNI CTCAG 1 cut(s) 548
BspLI GGNNCC 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 2 cut(s) 354, 498
BsrI ACTGG 6 cut(s) 30, 97, 181, 322, 412, 512
BssECI CCNNGG 5 cut(s) 116, 355, 373, 497, 513
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 3 cut(s) 355, 373, 497
Bst2UI CCWGG 2 cut(s) 117, 514
Bst4CI ACNGT 3 cut(s) 88, 164, 483
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 395, 451, 535
BstDSI CCRYGG 1 cut(s) 355
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 274, 507
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 354, 498
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 2 cut(s) 117, 514
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 115, 512
BsuRI GGCC 2 cut(s) 78, 108
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 2 cut(s) 274, 507
BtsIMutI CAGTG 3 cut(s) 37, 315, 405
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 4 cut(s) 77, 179, 320, 510
Csp6I GTAC 1 cut(s) 20
CviAII CATG 9 cut(s) 125, 134, 140, 169, 209, 236, 356, 389, 564
CviJI RGCY 9 cut(s) 78, 108, 115, 121, 394, 431, 442, 455, 550
CviKI_1 RGCY 9 cut(s) 78, 108, 115, 121, 394, 431, 442, 455, 550
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 3 cut(s) 395, 451, 535
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 3 cut(s) 355, 373, 497
Eco31I GGTCTC 2 cut(s) 354, 498
Eco47I GGWCC 3 cut(s) 179, 320, 510
Eco57I CTGAAG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 115, 512
EcoT14I CCWWGG 3 cut(s) 355, 373, 497
ErhI CCWWGG 3 cut(s) 355, 373, 497
FaeI CATG 9 cut(s) 128, 137, 143, 172, 212, 239, 359, 392, 567
FatI CATG 9 cut(s) 124, 133, 139, 168, 208, 235, 355, 388, 563
FokI GGATG 2 cut(s) 281, 514
GsuI CTGGAG 2 cut(s) 13, 438
HaeIII GGCC 2 cut(s) 78, 108
Hin1II CATG 9 cut(s) 128, 137, 143, 172, 212, 239, 359, 392, 567
HincII GTYRAC 2 cut(s) 174, 298
HindII GTYRAC 2 cut(s) 174, 298
HindIII AAGCTT 1 cut(s) 548
HinfI GANTC 3 cut(s) 229, 307, 542
HphI GGTGA 3 cut(s) 52, 161, 254
Hpy166II GTNNAC 3 cut(s) 174, 298, 386
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 3 cut(s) 174, 298, 386
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 88, 164, 483
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 168, 476
HpyF3I CTNAG 3 cut(s) 395, 451, 535
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 9 cut(s) 128, 137, 143, 172, 212, 239, 359, 392, 567
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 3 cut(s) 32, 220, 517
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 40, 88, 149
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 2 cut(s) 49, 233
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 291
MnlI CCTC 7 cut(s) 28, 61, 65, 119, 321, 413, 544
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 2 cut(s) 138, 240
MspR9I CCNGG 2 cut(s) 117, 514
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 2 cut(s) 117, 514
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 244
NlaIII CATG 9 cut(s) 128, 137, 143, 172, 212, 239, 359, 392, 567
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 2 cut(s) 88, 149
NspI RCATGY 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 229, 307, 542
Psp1406I AACGTT 1 cut(s) 99
Psp6I CCWGG 2 cut(s) 115, 512
PspGI CCWGG 2 cut(s) 115, 512
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 4 cut(s) 77, 179, 320, 510
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 138, 240
SaqAI TTAA 1 cut(s) 461
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 4 cut(s) 77, 179, 320, 510
ScrFI CCNGG 2 cut(s) 117, 514
SduI GDGCHC 1 cut(s) 217
SetI ASST 9 cut(s) 102, 287, 375, 396, 433, 444, 457, 536, 552
SinI GGWCC 3 cut(s) 179, 320, 510
SmiMI CAYNNNNRTG 2 cut(s) 138, 240
SmlI CTYRAG 2 cut(s) 110, 551
SmoI CTYRAG 2 cut(s) 110, 551
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 115, 512
StyI CCWWGG 3 cut(s) 355, 373, 497
TaaI ACNGT 3 cut(s) 88, 164, 483
TaiI ACGT 1 cut(s) 102
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 3 cut(s) 229, 307, 542
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 3 cut(s) 37, 322, 412
TseFI GTSAC 2 cut(s) 88, 149
Tsp45I GTSAC 2 cut(s) 88, 149
TspDTI ATGAA 3 cut(s) 113, 128, 518
TspRI CASTG 3 cut(s) 37, 322, 412
VpaK11BI GGWCC 3 cut(s) 179, 320, 510
XagI CCTNNNNNAGG 1 cut(s) 377
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 2 cut(s) 71, 504
XmnI GAANNNNTTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.