Rw3G003640

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009814
Physical Location & Seq
Forward (+)
3075812 .. 3078746
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003640.1

Sequence Viewer

Length: 459 bp
ATGGCGAAGGGCGTTGCTGTACTTTGCTCCAGTGAGGGTGTTAAAGGAACTATCCTCTTCACACAAGAGGGAGATGGCCCAACTACTGTGACTGGAAACGTTTCTGGCCTCAAGCCTGGGCTTCATGGTTTTCATGTTCATGCTCTTGGTGACACAACAAACGGTTGCATGTCAACTGGACCACACTTCAATCCTGCTGCCAAAGAGCATGGTGCTCCTGAAGATGAGAATCGTCATGCTGGTGATCTTGGAAATATTACTGTTGGGGATGATGGAACTGCTACCTTCACAATTGTTGACAAGCAGATTCCTCTCACCGGACCACACTCTATCATTGGTAGGGCGGTTGTTGTCCATGGAGACCCTGATGACCTTGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGAGGCAGGATAGCTTGTGGTATTATTGGTCTCCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

152

Amino Acids

15.25

Weight (kDa)

5.77

Isoelectric Point (pI)

18.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 14 - 148 4.2e-52 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 344
AclI AACGTT 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 21
AfiI CCNNNNNNNGG 2 cut(s) 317, 379
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 2 cut(s) 394, 431
AluI AGCT 2 cut(s) 394, 431
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 2 cut(s) 354, 452
AoxI GGCC 2 cut(s) 76, 106
ApeKI GCWGC 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 3 cut(s) 77, 179, 320
AsuHPI GGTGA 3 cut(s) 161, 254, 307
AvaII GGWCC 2 cut(s) 179, 320
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 68, 266
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 354, 452
BisI GCNGC 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 179, 320
BmgT120I GGNCC 3 cut(s) 77, 179, 320
BmrFI CCNGG 1 cut(s) 117
BpmI CTGGAG 2 cut(s) 13, 438
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 228
BsaI GGTCTC 2 cut(s) 354, 452
BsaJI CCNNGG 4 cut(s) 116, 355, 373, 451
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 379
Bse1I ACTGG 4 cut(s) 30, 97, 181, 412
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 116, 355, 373, 451
BseGI GGATG 1 cut(s) 274
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 317, 379
BseNI ACTGG 4 cut(s) 30, 97, 181, 412
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 78, 108
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 317, 379
BsmAI GTCTC 2 cut(s) 354, 452
BsnI GGCC 2 cut(s) 78, 108
Bso31I GGTCTC 2 cut(s) 354, 452
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 244
Bsp1720I GCTNAGC 1 cut(s) 395
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 1 cut(s) 344
BspANI GGCC 2 cut(s) 78, 108
BspTNI GGTCTC 2 cut(s) 354, 452
BsrI ACTGG 4 cut(s) 30, 97, 181, 412
BssECI CCNNGG 4 cut(s) 116, 355, 373, 451
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 3 cut(s) 355, 373, 451
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 88, 164, 262
Bst6I CTCTTC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 355
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 2 cut(s) 354, 452
BstMBI GATC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 78, 108
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 37, 405
Cfr13I GGNCC 3 cut(s) 77, 179, 320
Csp6I GTAC 1 cut(s) 20
CviAII CATG 8 cut(s) 125, 134, 140, 169, 209, 236, 356, 389
CviJI RGCY 6 cut(s) 78, 108, 115, 121, 394, 431
CviKI_1 RGCY 6 cut(s) 78, 108, 115, 121, 394, 431
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 395
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 3 cut(s) 355, 373, 451
Eco31I GGTCTC 2 cut(s) 354, 452
Eco47I GGWCC 2 cut(s) 179, 320
Eco57I CTGAAG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 355, 373, 451
ErhI CCWWGG 3 cut(s) 355, 373, 451
FaeI CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
FaiI YATR 8 cut(s) 126, 135, 141, 170, 210, 237, 357, 390
FatI CATG 8 cut(s) 124, 133, 139, 168, 208, 235, 355, 388
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
GsuI CTGGAG 2 cut(s) 13, 438
HaeIII GGCC 2 cut(s) 78, 108
HapII CCGG 1 cut(s) 318
Hin1II CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
HincII GTYRAC 2 cut(s) 174, 298
HindII GTYRAC 2 cut(s) 174, 298
HinfI GANTC 2 cut(s) 229, 307
HpaII CCGG 1 cut(s) 318
HphI GGTGA 3 cut(s) 161, 254, 307
Hpy166II GTNNAC 3 cut(s) 174, 298, 386
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 3 cut(s) 174, 298, 386
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 88, 164, 262
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 2 cut(s) 32, 220
Lsp1109I GCAGC 1 cut(s) 184
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 88, 149
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 2 cut(s) 49, 233
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 291
MnlI CCTC 6 cut(s) 28, 61, 65, 119, 321, 413
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 138, 240
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 117
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 244
NlaIII CATG 8 cut(s) 128, 137, 143, 172, 212, 239, 359, 392
NmuCI GTSAC 2 cut(s) 88, 149
NspI RCATGY 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 229, 307
PkrI GCNGC 1 cut(s) 199
Psp1406I AACGTT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 3 cut(s) 77, 179, 320
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 138, 240
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 3 cut(s) 77, 179, 320
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 217
SetI ASST 5 cut(s) 102, 287, 375, 396, 433
SinI GGWCC 2 cut(s) 179, 320
SmiMI CAYNNNNRTG 2 cut(s) 138, 240
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 344
SspI AATATT 1 cut(s) 256
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 3 cut(s) 355, 373, 451
TaaI ACNGT 3 cut(s) 88, 164, 262
TaiI ACGT 1 cut(s) 102
TasI AATT 1 cut(s) 291
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 2 cut(s) 229, 307
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 37, 412
TseFI GTSAC 2 cut(s) 88, 149
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 2 cut(s) 88, 149
TspDTI ATGAA 3 cut(s) 113, 122, 128
TspRI CASTG 2 cut(s) 37, 412
VpaK11BI GGWCC 2 cut(s) 179, 320
XagI CCTNNNNNAGG 1 cut(s) 377
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.