Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009814

Physical Location & Seq

Genomic Coordinates Reverse (-)

46711891 .. 46713632

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGAAGGGTGTTGCTGTACTTGGCTCCAGTGAGGGTGTTAAAGGAACTATCTTCTTCACCCAAGAGGGAGATGAGCATGGTGCTCCTGAAGATGAGAATCGTCATGCTGGTGATCTTGGAAATATCACTGTTGGGGATGATGGTATATATTTTACTATTCCTTTATCAGCTTATTTTTTGAGCACCCTTACTGAACTACATCTAGTGCGAAGGGCGGTTGTTGTCCATGGAGACCCTGATGACCTTGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGAGGCAGGGTAGCTTGTGGTATTATTGGTCTCCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009636 GO:0009987 GO:0010035 GO:0016209 GO:0016491 GO:0016721 GO:0019430 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071450 GO:0071451 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

111

Amino Acids

11.35

Weight (kDa)

4.98

Isoelectric Point (pI)

29.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	20 - 106	4.2e-21	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08830 AT1G08830
fragaria_vesca	FvH4_6g04231 FvH4_6g04231
malus_domestica	MD00G1051500.v1.1 MD12G1231600.v1.1 MD12G1231900.v1.1
prunus_persica	Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452901
rosa_laevigata	RLG00000025561
rosa_multiflora	Rmu_sc0002823.1_g000007
rosa_roxburghii	Rroxscaffold_6G00429910
rosa_rugosa	Rorug02G0643500
rosa_samantha	Rh3AG046300 Rh3BG048800 Rh3CG047400 Rh3DG048400
rosa_wichuraiana	Rw3G003640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	21
AfiI	CCNNNNNNNGG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	173, 268, 305
AluI	AGCT	3 cut(s)	173, 268, 305
Alw21I	GWGCWC	2 cut(s)	88, 188
Alw26I	GTCTC	2 cut(s)	228, 326
AsuHPI	GGTGA	2 cut(s)	52, 125
Bbv12I	GWGCWC	2 cut(s)	88, 188
BccI	CCATC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	228, 326
BfaI	CTAG	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	28
BpmI	CTGGAG	2 cut(s)	13, 312
Bpu1102I	GCTNAGC	1 cut(s)	269
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	2 cut(s)	228, 326
BsaJI	CCNNGG	3 cut(s)	229, 247, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	30, 286
Bse8I	GATNNNNATC	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	229, 247, 325
BseGI	GGATG	1 cut(s)	145
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseNI	ACTGG	2 cut(s)	30, 286
BsiHKAI	GWGCWC	2 cut(s)	88, 188
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	228, 326
Bso31I	GGTCTC	2 cut(s)	228, 326
Bsp1286I	GDGCHC	2 cut(s)	88, 188
Bsp143I	GATC	1 cut(s)	115
Bsp1720I	GCTNAGC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	28
BspTNI	GGTCTC	2 cut(s)	228, 326
BsrI	ACTGG	2 cut(s)	30, 286
BssECI	CCNNGG	3 cut(s)	229, 247, 325
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	3 cut(s)	229, 247, 325
Bst4CI	ACNGT	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	229
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	2 cut(s)	228, 326
BstMBI	GATC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	3 cut(s)	37, 129, 279
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	4 cut(s)	80, 107, 230, 263
CviJI	RGCY	4 cut(s)	27, 173, 268, 305
CviKI_1	RGCY	4 cut(s)	27, 173, 268, 305
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco130I	CCWWGG	3 cut(s)	229, 247, 325
Eco31I	GGTCTC	2 cut(s)	228, 326
Eco57I	CTGAAG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoT14I	CCWWGG	3 cut(s)	229, 247, 325
ErhI	CCWWGG	3 cut(s)	229, 247, 325
FaeI	CATG	4 cut(s)	83, 110, 233, 266
FaiI	YATR	6 cut(s)	81, 108, 149, 151, 231, 264
FatI	CATG	4 cut(s)	79, 106, 229, 262
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	1 cut(s)	206
GsuI	CTGGAG	2 cut(s)	13, 312
Hin1II	CATG	4 cut(s)	83, 110, 233, 266
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	2 cut(s)	52, 125
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	4 cut(s)	83, 110, 233, 266
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	32, 91
LpnPI	CCDG	7 cut(s)	43, 96, 102, 252, 267, 276, 283
MaeI	CTAG	1 cut(s)	206
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	46, 49, 104
MhlI	GDGCHC	2 cut(s)	88, 188
MnlI	CCTC	3 cut(s)	28, 61, 287
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	4 cut(s)	83, 110, 233, 266
NlaIV	GGNNCC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	28
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	88, 188
SetI	ASST	4 cut(s)	175, 249, 270, 307
SmiMI	CAYNNNNRTG	1 cut(s)	111
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	206
StyI	CCWWGG	3 cut(s)	229, 247, 325
TaaI	ACNGT	1 cut(s)	133
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	3 cut(s)	37, 136, 286
TspRI	CASTG	3 cut(s)	37, 136, 286
XagI	CCTNNNNNAGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.