MD12G1231600.v1.1

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0009814
Physical Location & Seq
Forward (+)
30653431 .. 30656269
2839 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1231600.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGTGAAGGGTGTTGCTGTTCTCGGCTCCAGTGAGGGTGTTAAAGGAACCATCAACTTCGTCCAGGAGGGAGATGGTCCAACTACTGTGACTGGATGTATCTCTGGCCTCAAGCCTGGACTTCATGGTTTCCACGTCCATGCTTTCGGAGACACAACAAACGGTTGCTTGTCAACTGGGCCACACTTCAATCCTAATGGAAAAGAGCATGGTGCCCCTGAAGATGAGGATCGTCATGCTGGCGACCTTGGAAATGTCACTGTTGGGGATGATGGAACTGCAACCTTCACTCTTATTGACAAGCAGATACCTCTAACCGGACCACACTCTGTCATTGGTAGGGCAGTTGTTGTCCATGGCGACCCAGATGACCTGGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGTGGCAGGGTAGCTTGTGGTATTATCGGTCTGCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

153

Amino Acids

15.25

Weight (kDa)

5.6

Isoelectric Point (pI)

8.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 14 - 148 4.9e-51 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AclWI GGATC 1 cut(s) 237
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 317, 379
AgsI TTSAA 1 cut(s) 190
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 3 cut(s) 63, 115, 372
AluBI AGCT 2 cut(s) 394, 431
AluI AGCT 2 cut(s) 394, 431
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 237
AoxI GGCC 2 cut(s) 106, 179
AspS9I GGNCC 3 cut(s) 77, 179, 320
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 2 cut(s) 77, 320
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 212
BccI CCATC 3 cut(s) 59, 68, 266
BciT130I CCWGG 3 cut(s) 65, 117, 374
BcoDI GTCTC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 395
Bme1390I CCNGG 3 cut(s) 65, 117, 374
Bme18I GGWCC 2 cut(s) 77, 320
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 77, 179, 320
BmiI GGNNCC 3 cut(s) 28, 49, 214
BmrFI CCNGG 3 cut(s) 65, 117, 374
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 247, 355, 373
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 379
Bse1I ACTGG 4 cut(s) 30, 97, 181, 412
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 3 cut(s) 65, 117, 374
BseDI CCNNGG 3 cut(s) 247, 355, 373
BseGI GGATG 2 cut(s) 101, 274
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 317, 379
BseNI ACTGG 4 cut(s) 30, 97, 181, 412
BseSI GKGCMC 1 cut(s) 217
BshFI GGCC 2 cut(s) 108, 181
BshNI GGYRCC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 317, 379
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 2 cut(s) 108, 181
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 229
Bsp1720I GCTNAGC 1 cut(s) 395
Bsp19I CCATGG 1 cut(s) 355
BspANI GGCC 2 cut(s) 108, 181
BspLI GGNNCC 3 cut(s) 28, 49, 214
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 212
BsrI ACTGG 4 cut(s) 30, 97, 181, 412
BssECI CCNNGG 3 cut(s) 247, 355, 373
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 2 cut(s) 247, 355
Bst2UI CCWGG 3 cut(s) 65, 117, 374
Bst4CI ACNGT 3 cut(s) 88, 164, 262
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 355
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 101, 274
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 229
BstNI CCWGG 3 cut(s) 65, 117, 374
BstSCI CCNGG 3 cut(s) 63, 115, 372
BstSLI GKGCMC 1 cut(s) 217
BsuRI GGCC 2 cut(s) 108, 181
BtgI CCRYGG 1 cut(s) 355
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 101, 274
BtsIMutI CAGTG 3 cut(s) 37, 258, 405
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 3 cut(s) 77, 179, 320
CviAII CATG 6 cut(s) 125, 140, 209, 236, 356, 389
CviJI RGCY 6 cut(s) 27, 108, 115, 181, 394, 431
CviKI_1 RGCY 6 cut(s) 27, 108, 115, 181, 394, 431
DdeI CTNAG 1 cut(s) 395
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 247, 355
Eco47I GGWCC 2 cut(s) 77, 320
Eco57I CTGAAG 1 cut(s) 240
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 3 cut(s) 63, 115, 372
EcoT14I CCWWGG 2 cut(s) 247, 355
ErhI CCWWGG 2 cut(s) 247, 355
FaeI CATG 6 cut(s) 128, 143, 212, 239, 359, 392
FaiI YATR 6 cut(s) 126, 141, 210, 237, 357, 390
FatI CATG 6 cut(s) 124, 139, 208, 235, 355, 388
FokI GGATG 2 cut(s) 108, 281
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 2 cut(s) 108, 181
HapII CCGG 1 cut(s) 318
Hin1II CATG 6 cut(s) 128, 143, 212, 239, 359, 392
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HpaII CCGG 1 cut(s) 318
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 174, 386
Hpy188I TCNGA 1 cut(s) 149
Hpy8I GTNNAC 2 cut(s) 174, 386
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 88, 164, 262
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 281, 451
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 6 cut(s) 128, 143, 212, 239, 359, 392
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 32
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 2 cut(s) 88, 256
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 5 cut(s) 28, 61, 119, 220, 321
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 3 cut(s) 65, 117, 374
MvaI CCWGG 3 cut(s) 65, 117, 374
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 229
NlaIII CATG 6 cut(s) 128, 143, 212, 239, 359, 392
NlaIV GGNNCC 3 cut(s) 28, 49, 214
NmuCI GTSAC 2 cut(s) 88, 256
PfoI TCCNGGA 1 cut(s) 63
Psp6I CCWGG 3 cut(s) 63, 115, 372
PspGI CCWGG 3 cut(s) 63, 115, 372
PspN4I GGNNCC 3 cut(s) 28, 49, 214
PspPI GGNCC 3 cut(s) 77, 179, 320
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 3 cut(s) 77, 179, 320
ScrFI CCNGG 3 cut(s) 65, 117, 374
SduI GDGCHC 1 cut(s) 217
SetI ASST 7 cut(s) 138, 249, 287, 313, 375, 396, 433
SinI GGWCC 2 cut(s) 77, 320
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
StyD4I CCNGG 3 cut(s) 63, 115, 372
StyI CCWWGG 2 cut(s) 247, 355
TaaI ACNGT 3 cut(s) 88, 164, 262
TaiI ACGT 1 cut(s) 138
TaqII GACCGA 1 cut(s) 434
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 3 cut(s) 37, 265, 412
TseFI GTSAC 2 cut(s) 88, 256
Tsp45I GTSAC 2 cut(s) 88, 256
TspDTI ATGAA 1 cut(s) 113
TspRI CASTG 3 cut(s) 37, 265, 412
VpaK11BI GGWCC 2 cut(s) 77, 320
XagI CCTNNNNNAGG 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.