Rh3BG048800

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009814
Physical Location & Seq
Forward (+)
3230666 .. 3233865
3200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG048800.1

Sequence Viewer

Length: 381 bp
ATGGCGAAGGGCGTTGCTGTACTTTGCTCCAGTGAGGGTGTTAAAGGAACTATCCTCTTCACACAAGAGGGAGATGGCCCAACTACTGTGACTGGAAACGTTTCTGGCCTCAAGCCTGGGCTTCATGGTTTTCATGTTCATGCTCTTGGTGACACAACAAACGGTTGCATGTCAACTGGACCACATTTCAATCCTGCTGGCAAAGAGCATGGTGCTTCTGAAGACGAGAATCGTCATGCTGGTGATCTTGGAAATATTACTGTTGGGGATGATGGTATATATTTTACTATTCCTTTATCAGCTTATTTTTTGAGCATCCTGTTTGTCTTCATTGAGAGCTTTATGATCACCAGACTAGCTACATCTAGTGCGAGAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

126

Amino Acids

13.14

Weight (kDa)

5.54

Isoelectric Point (pI)

23.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 14 - 94 2.9e-30 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 21
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 302, 339, 359
AluI AGCT 3 cut(s) 302, 339, 359
AoxI GGCC 2 cut(s) 76, 106
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 77, 179
AsuHPI GGTGA 3 cut(s) 161, 254, 340
AvaII GGWCC 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 228, 319
BccI CCATC 2 cut(s) 68, 266
BciT130I CCWGG 1 cut(s) 117
BclI TGATCA 1 cut(s) 345
BfaI CTAG 2 cut(s) 356, 366
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 77, 179
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 324
BpiI GAAGAC 2 cut(s) 228, 319
BpmI CTGGAG 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 116
Bse1I ACTGG 3 cut(s) 30, 97, 181
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 2 cut(s) 274, 315
BseNI ACTGG 3 cut(s) 30, 97, 181
BshFI GGCC 2 cut(s) 78, 108
BsnI GGCC 2 cut(s) 78, 108
Bsp143I GATC 2 cut(s) 244, 345
BspANI GGCC 2 cut(s) 78, 108
BsrI ACTGG 3 cut(s) 30, 97, 181
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 2 cut(s) 244, 345
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 88, 164, 262
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 199
BstF5I GGATG 2 cut(s) 274, 315
BstKTI GATC 2 cut(s) 247, 348
BstMBI GATC 2 cut(s) 244, 345
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 115
BstV2I GAAGAC 2 cut(s) 228, 319
BsuRI GGCC 2 cut(s) 78, 108
BtsCI GGATG 2 cut(s) 274, 315
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 77, 179
Csp6I GTAC 1 cut(s) 20
CviAII CATG 6 cut(s) 125, 134, 140, 169, 209, 236
CviJI RGCY 7 cut(s) 78, 108, 115, 121, 302, 339, 359
CviKI_1 RGCY 7 cut(s) 78, 108, 115, 121, 302, 339, 359
CviQI GTAC 1 cut(s) 20
DpnI GATC 2 cut(s) 246, 347
DpnII GATC 2 cut(s) 244, 345
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 115
FaeI CATG 6 cut(s) 128, 137, 143, 172, 212, 239
FaiI YATR 9 cut(s) 126, 135, 141, 170, 210, 237, 278, 280, 344
FatI CATG 6 cut(s) 124, 133, 139, 168, 208, 235
FbaI TGATCA 1 cut(s) 345
FokI GGATG 2 cut(s) 281, 302
FspBI CTAG 2 cut(s) 356, 366
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 2 cut(s) 78, 108
Hin1II CATG 6 cut(s) 128, 137, 143, 172, 212, 239
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 1 cut(s) 229
HphI GGTGA 3 cut(s) 161, 254, 340
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 174
HpyCH4III ACNGT 3 cut(s) 88, 164, 262
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 6 cut(s) 128, 137, 143, 172, 212, 239
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 2 cut(s) 244, 345
LmnI GCTCC 1 cut(s) 32
LweI GCATC 1 cut(s) 324
MaeI CTAG 2 cut(s) 356, 366
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 88, 149
MalI GATC 2 cut(s) 246, 347
MboI GATC 2 cut(s) 244, 345
MboII GAAGA 3 cut(s) 49, 233, 319
MnlI CCTC 4 cut(s) 28, 61, 65, 119
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 138, 240
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NdeII GATC 2 cut(s) 244, 345
NlaIII CATG 6 cut(s) 128, 137, 143, 172, 212, 239
NmuCI GTSAC 2 cut(s) 88, 149
NspI RCATGY 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 229
Psp1406I AACGTT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 2 cut(s) 77, 179
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
RseI CAYNNNNRTG 2 cut(s) 138, 240
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 2 cut(s) 244, 345
Sau96I GGNCC 2 cut(s) 77, 179
ScrFI CCNGG 1 cut(s) 117
SetI ASST 4 cut(s) 102, 304, 341, 361
SfaNI GCATC 1 cut(s) 324
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 138, 240
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SspI AATATT 1 cut(s) 256
SspMI CTAG 2 cut(s) 356, 366
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 88, 164, 262
TaiI ACGT 1 cut(s) 102
TatI WGTACW 1 cut(s) 19
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 88, 149
Tsp45I GTSAC 2 cut(s) 88, 149
TspDTI ATGAA 4 cut(s) 113, 122, 128, 319
TspRI CASTG 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 2 cut(s) 356, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.