Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009814

Physical Location & Seq

Genomic Coordinates Forward (+)

30664238 .. 30665551

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1231900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGATGATACCTCTAACCGGACCACACTCTGTCATTGGTAGGGCAGTTGTTGTCCATGGCGACCCAAATGACCTGGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGTGGCAGGGTAGCTTGTGGTATTATCGGTCTGCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006801 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048519 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071241 GO:0071248 GO:0071280 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

53

Amino Acids

5.13

Weight (kDa)

8.02

Isoelectric Point (pI)

16.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sod_Cu	PF00080	3 - 48	2.4e-12	Copper/zinc superoxide dismutase (SODC)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08830 AT1G08830
fragaria_vesca	FvH4_6g04231 FvH4_6g04231
malus_domestica	MD00G1051500.v1.1 MD12G1231600.v1.1 MD12G1231900.v1.1
prunus_persica	Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1 Prupe.6G335000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452901
rosa_laevigata	RLG00000025561
rosa_multiflora	Rmu_sc0002823.1_g000007
rosa_roxburghii	Rroxscaffold_6G00429910
rosa_rugosa	Rorug02G0643500
rosa_samantha	Rh3AG046300 Rh3BG048800 Rh3CG047400 Rh3DG048400
rosa_wichuraiana	Rw3G003640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	17, 79
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	94, 131
AluI	AGCT	2 cut(s)	94, 131
AspS9I	GGNCC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	74
BlpI	GCTNAGC	1 cut(s)	95
Bme1390I	CCNGG	1 cut(s)	74
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	55, 73
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 79
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	55, 73
BseLI	CCNNNNNNNGG	2 cut(s)	17, 79
BseNI	ACTGG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	17, 79
Bsp1720I	GCTNAGC	1 cut(s)	95
Bsp19I	CCATGG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	55, 73
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	20
CviAII	CATG	2 cut(s)	56, 89
CviJI	RGCY	2 cut(s)	94, 131
CviKI_1	RGCY	2 cut(s)	94, 131
DdeI	CTNAG	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	59, 92
FaiI	YATR	2 cut(s)	57, 90
FatI	CATG	2 cut(s)	55, 88
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	59, 92
HpaII	CCGG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	59, 92
LpnPI	CCDG	6 cut(s)	31, 59, 86, 93, 102, 109
MnlI	CCTC	1 cut(s)	21
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	55
NlaIII	CATG	2 cut(s)	59, 92
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	4 cut(s)	13, 75, 96, 133
SinI	GGWCC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	55
TaqII	GACCGA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	112
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	20
XagI	CCTNNNNNAGG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.