AT1G08845

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006833
Physical Location & Seq
Forward (+)
2838789 .. 2841134
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08845.3

Sequence Viewer

Length: 570 bp
ATGTTGAAGCAAGTGGTTGCCAAGTATTCTATAGGTAAAGCGGCGATTTATGGAAGTAACAGAGAAAAGCTTAGACCTTTCATGTGCCAAACCAGTTGTCGATTCCACAATGGACGGACTGTTTTTGCACCAAGAAGCTTCTTTGGTGTAGAAGACTACGTGGATGACGACACAAGCCGGCCATACACATACCAAAAAGAGAAAAAGTCGAAGAATCCAGACAAGCATGTGTCGTTCAAGCAACGAACAGTTGCATACATGGAGCCGTTCACTCTAGATGTCTTCATCTCAAAGCGCTTTGTTTCGGCATCTCTCACGCACCGTGTTACATGTAGGCAAGTTGCTGTTGCGGGAACAAACTCTAAAGACGTAAAAGCTGTTCTGAGGTCAAGATGTGATATCCCGGCATGTATGTCCATAGGGAGGATCTTGTCTGAGCGTGCAAAAGAAGCTGATGTGTACACGGCTTCTTATACGCCAAGGGACCAAGACAAGTTTGAAGGGAAAATCAGAGCTGTTGTCCAGTCCCTTATTGATAACGGAATTGATGTTAAAATTTATCTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

189

Amino Acids

21.53

Weight (kDa)

9.57

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 67 - 183 1.2e-06 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 41, 350
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 1 cut(s) 555
AfaI GTAC 1 cut(s) 461
AfeI AGCGCT 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 423
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 3 cut(s) 7, 238, 500
AluBI AGCT 5 cut(s) 70, 138, 377, 452, 515
AluI AGCT 5 cut(s) 70, 138, 377, 452, 515
AlwI GGATC 1 cut(s) 434
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 555
ArsI GACNNNNNNTTYG 2 cut(s) 82, 114
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 484
AsuC2I CCSGG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 484
BbsI GAAGAC 2 cut(s) 159, 274
BceAI ACGGC 2 cut(s) 250, 480
BcnI CCSGG 1 cut(s) 404
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 298
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 484
BmiI GGNNCC 2 cut(s) 264, 485
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 317
BpiI GAAGAC 2 cut(s) 159, 274
BpuMI CCSGG 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 479
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 93, 523
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMII CTCAG 2 cut(s) 374, 426
BseNI ACTGG 2 cut(s) 93, 523
BshFI GGCC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 178, 404
BslFI GGGAC 2 cut(s) 497, 511
BslI CCNNNNNNNGG 1 cut(s) 423
BsmFI GGGAC 2 cut(s) 497, 511
BsnI GGCC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 1 cut(s) 426
BspACI CCGC 2 cut(s) 41, 350
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 375, 427
BspLI GGNNCC 2 cut(s) 264, 485
BspPI GGATC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 2 cut(s) 93, 523
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 479
Bst4CI ACNGT 3 cut(s) 121, 250, 323
BstAUI TGTACA 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 179, 441
BstDEI CTNAG 3 cut(s) 71, 383, 435
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 429
BstMBI GATC 1 cut(s) 426
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNSI RCATGY 3 cut(s) 230, 333, 411
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 30
BstV2I GAAGAC 2 cut(s) 159, 274
BstX2I RGATCY 1 cut(s) 426
BstYI RGATCY 1 cut(s) 426
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 179, 441
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 484
Csp6I GTAC 1 cut(s) 460
CviAII CATG 5 cut(s) 82, 227, 259, 330, 408
CviJI RGCY 9 cut(s) 70, 138, 177, 181, 265, 377, 452, 467, 515
CviKI_1 RGCY 9 cut(s) 70, 138, 177, 181, 265, 377, 452, 467, 515
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 3 cut(s) 71, 383, 435
DpnI GATC 1 cut(s) 428
DpnII GATC 1 cut(s) 426
EaeI YGGCCR 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 479
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 484
Eco47III AGCGCT 1 cut(s) 296
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 479
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 5 cut(s) 85, 230, 262, 333, 411
FaqI GGGAC 2 cut(s) 497, 511
FatI CATG 5 cut(s) 81, 226, 258, 329, 407
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 178, 404
HhaI GCGC 1 cut(s) 297
Hin1II CATG 5 cut(s) 85, 230, 262, 333, 411
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HindIII AAGCTT 2 cut(s) 68, 136
HinfI GANTC 2 cut(s) 102, 214
HpaII CCGG 2 cut(s) 178, 404
Hpy166II GTNNAC 3 cut(s) 270, 460, 462
Hpy188I TCNGA 3 cut(s) 384, 436, 512
Hpy188III TCNNGA 4 cut(s) 218, 275, 390, 563
Hpy8I GTNNAC 3 cut(s) 270, 460, 462
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 3 cut(s) 121, 250, 323
HpyCH4IV ACGT 2 cut(s) 159, 369
HpyCH4V TGCA 3 cut(s) 128, 254, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 3 cut(s) 71, 383, 435
HpySE526I ACGT 2 cut(s) 159, 369
Hsp92II CATG 5 cut(s) 85, 230, 262, 333, 411
HspAI GCGC 1 cut(s) 295
KroI GCCGGC 1 cut(s) 177
KroNI GCCGGC 1 cut(s) 179
Kzo9I GATC 1 cut(s) 426
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 5 cut(s) 106, 191, 231, 417, 536
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 275
MaeII ACGT 2 cut(s) 159, 369
MaeIII GTNAC 2 cut(s) 56, 325
MalI GATC 1 cut(s) 428
MboI GATC 1 cut(s) 426
MboII GAAGA 3 cut(s) 164, 223, 274
MflI RGATCY 1 cut(s) 426
MluCI AATT 2 cut(s) 543, 555
MnlI CCTC 2 cut(s) 378, 417
MroNI GCCGGC 1 cut(s) 177
MseI TTAA 1 cut(s) 552
MspI CCGG 2 cut(s) 178, 404
MspR9I CCNGG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 449
NaeI GCCGGC 1 cut(s) 179
NciI CCSGG 1 cut(s) 404
NdeII GATC 1 cut(s) 426
NgoMIV GCCGGC 1 cut(s) 177
NlaIII CATG 5 cut(s) 85, 230, 262, 333, 411
NlaIV GGNNCC 2 cut(s) 264, 485
NspI RCATGY 3 cut(s) 230, 333, 411
PciI ACATGT 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 102, 214
PkrI GCNGC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 160
PscI ACATGT 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 264, 485
PspPI GGNCC 1 cut(s) 484
PsrI GAACNNNNNNTAC 2 cut(s) 363, 395
PsuI RGATCY 1 cut(s) 426
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 426
Sau96I GGNCC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 404
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 30
SinI GGWCC 1 cut(s) 484
Sse9I AATT 2 cut(s) 543, 555
SsiI CCGC 2 cut(s) 41, 350
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 3 cut(s) 121, 250, 323
TaiI ACGT 2 cut(s) 162, 372
TaqI TCGA 3 cut(s) 100, 209, 564
TasI AATT 2 cut(s) 543, 555
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 102, 214
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TspDTI ATGAA 2 cut(s) 70, 274
TspGWI ACGGA 2 cut(s) 130, 555
VpaK11BI GGWCC 1 cut(s) 484
XapI RAATTY 1 cut(s) 555
XbaI TCTAGA 1 cut(s) 274
XceI RCATGY 3 cut(s) 230, 333, 411
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.