Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003983.1

Orthogroup ID

OG0006833

Physical Location & Seq

Genomic Coordinates Reverse (-)

46170 .. 47225

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003983.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgttgaagcaggtgtttgggaaggtgtggaacaaagggggggtttatggctgtggaggaagcagaattaggccttgctactatgtgcccactagtggtttccacaatgcacaggttcatcgtgcaccgagaagtttttttggggtagaggattttgttgatgataacaatagtcggccatacacttatcagaaggaaaagaagtccaaaaatccacagaagcatgtatcatttaagcagcggaccatagcctacttagaaccatttacacttgatgtgttcatctcaaaacggtttgtgtcagcctcaatcacccacagggtaacatgcaagcaggttgcagttgccggtaccaactccaaagacataaaagctgcactcaagtctcgatgtgatatacctgcctgtatagccatcggccaaattttagccgatagggctagagaagcggatgtctataccgcttcatatactccaagggacagagacaagtttgaagggaagattagagcagttgtccaatccctcattgatagcgggattgatgttaaaatttatctcgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

188

Amino Acids

21.16

Weight (kDa)

9.64

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08845 AT1G08845 AT1G08845
fragaria_vesca	FvH4_6g04770 FvH4_6g04770
malus_domestica	MD04G1213500.v1.1 MD12G1228600.v1.1
prunus_persica	Prupe.6G333700_v2.0.a1
pyrus_communis	pycom04g18910 pycom12g21300
rosa_chinensis	RchiOBHm_Chr3g0453221
rosa_laevigata	RLG00000025528
rosa_multiflora	Rmu_sc0003983.1_g000009 Rmu_sc0040696.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430270
rosa_rugosa	Rorug02G0647400 Rorug02G0647400 Rorug02G0647400 Rorug02G0647500 Rorug02G0647600 Rorug02G0647600
rosa_samantha	Rh3AG050200 Rh3BG051400 Rh3CG051600 Rh3DG052200
rosa_wichuraiana	Rw3G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	325, 409
Acc65I	GGTACC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	350
AciI	CCGC	4 cut(s)	241, 449, 462, 537
AcoI	YGGCCR	2 cut(s)	176, 418
AcsI	RAATTY	2 cut(s)	423, 552
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	7, 497
AhlI	ACTAGT	1 cut(s)	92
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	390, 480
Alw44I	GTGCAC	1 cut(s)	123
AoxI	GGCC	3 cut(s)	71, 176, 418
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	238, 374
ApoI	RAATTY	2 cut(s)	423, 552
Asp718I	GGTACC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	2 cut(s)	90, 127
BanI	GGYRCC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	250, 361
BccI	CCATC	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	390, 480
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	93, 441
BfuAI	ACCTGC	2 cut(s)	325, 409
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	2 cut(s)	239, 375
BlsI	GCNGC	2 cut(s)	240, 376
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	90, 127
BseXI	GCAGC	2 cut(s)	250, 361
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	73, 178, 420
BshNI	GGYRCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	2 cut(s)	390, 480
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	73, 178, 420
Bsp1286I	GDGCHC	2 cut(s)	90, 127
BspACI	CCGC	4 cut(s)	241, 449, 462, 537
BspANI	GGCC	3 cut(s)	73, 178, 420
BspLI	GGNNCC	1 cut(s)	352
BspMI	ACCTGC	2 cut(s)	325, 409
BspT107I	GGYRCC	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	457
BstMAI	GTCTC	2 cut(s)	390, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 437, 446
BstNSI	RCATGY	2 cut(s)	227, 330
BstSLI	GKGCMC	2 cut(s)	90, 127
BstV1I	GCAGC	2 cut(s)	250, 361
BsuRI	GGCC	3 cut(s)	73, 178, 420
BtsCI	GGATG	1 cut(s)	457
BveI	ACCTGC	2 cut(s)	325, 409
Cac8I	GCNNGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	2 cut(s)	224, 327
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	256
EaeI	YGGCCR	2 cut(s)	176, 418
Eco130I	CCWWGG	1 cut(s)	476
Eco147I	AGGCCT	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	2 cut(s)	227, 330
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	2 cut(s)	223, 326
FauI	CCCGC	1 cut(s)	530
Fnu4HI	GCNGC	2 cut(s)	239, 375
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	239, 375
FspBI	CTAG	2 cut(s)	93, 441
GluI	GCNGC	2 cut(s)	239, 375
HaeIII	GGCC	3 cut(s)	73, 178, 420
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	2 cut(s)	227, 330
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	387, 560
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	16, 187, 491
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4V	TGCA	5 cut(s)	110, 125, 330, 341, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 437, 446
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	227, 330
KpnI	GGTACC	1 cut(s)	354
LpnPI	CCDG	6 cut(s)	98, 304, 320, 361, 414, 418
Lsp1109I	GCAGC	2 cut(s)	250, 361
MaeI	CTAG	2 cut(s)	93, 441
MaeIII	GTNAC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	90, 127
MluCI	AATT	3 cut(s)	66, 423, 552
MnlI	CCTC	4 cut(s)	50, 142, 316, 536
MseI	TTAA	2 cut(s)	234, 549
MspA1I	CMGCKG	1 cut(s)	241
MspI	CCGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	410, 437, 446
NlaIII	CATG	2 cut(s)	227, 330
NlaIV	GGNNCC	1 cut(s)	352
NspI	RCATGY	2 cut(s)	227, 330
PceI	AGGCCT	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	240, 376
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	243
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	234, 549
SatI	GCNGC	2 cut(s)	239, 375
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	90, 127
SetI	ASST	6 cut(s)	15, 27, 117, 339, 376, 403
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	3 cut(s)	66, 423, 552
SseBI	AGGCCT	1 cut(s)	73
SsiI	CCGC	4 cut(s)	241, 449, 462, 537
SspMI	CTAG	2 cut(s)	93, 441
StuI	AGGCCT	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	294
TaqI	TCGA	2 cut(s)	388, 561
TasI	AATT	3 cut(s)	66, 423, 552
Tru1I	TTAA	2 cut(s)	234, 549
Tru9I	TTAA	2 cut(s)	234, 549
TseI	GCWGC	2 cut(s)	238, 374
TspDTI	ATGAA	3 cut(s)	107, 271, 456
VneI	GTGCAC	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	2 cut(s)	423, 552
XceI	RCATGY	2 cut(s)	227, 330
XspI	CTAG	2 cut(s)	93, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.