Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006833

Physical Location & Seq

Genomic Coordinates Reverse (-)

20748376 .. 20749197

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTGAAGCAAGTCTTTGGGAAGGTGTGGAATAAAGGGGTTTTTGTGTATGGAGGAAACAGAGCCATGCCTTGCTTGTATGTGCCCACGAGTGATGTTCACAATGGACAGGTTCATTGTGCACCGAGAAGTTTTTTCGGGGTAGAGGATTTCCTCGATGATGACAATAGCCGGCCATACACTTACCAGAAGGAGAAGAAGTCCAAAAATCCAACAAAGCATATATCATTTAAACAGCGCACCATAGCCTACATTGAACCATTTACACTGGATGTGTTCATCTCAAAGAGGTTTGTGTCAGCCTCAATCACCCACAGGGTCACAACCAAGCAGGTTGCAACTGCCGGTACCAACTCCAAAGACATTAAAGCTGTACTCAAGTCGCGTTGTGACATACCTGCCTGTTTGGCAGTTGGCCAAATTTTAGCCGATAGGGCAAGAGAAGCCGATGTCTACACTGCTGCTTATACTCCCCGGGACAGGGACAAGTTTGAAGGGAAGATTAGAGCAGTTGTTCAATCCCTCATTGATAATGGGATTGATGTTAAAGTTTATCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

188

Amino Acids

21.06

Weight (kDa)

9.41

Isoelectric Point (pI)

28.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08845 AT1G08845 AT1G08845
fragaria_vesca	FvH4_6g04770 FvH4_6g04770
malus_domestica	MD04G1213500.v1.1 MD12G1228600.v1.1
prunus_persica	Prupe.6G333700_v2.0.a1
pyrus_communis	pycom04g18910 pycom12g21300
rosa_chinensis	RchiOBHm_Chr3g0453221
rosa_laevigata	RLG00000025528
rosa_multiflora	Rmu_sc0003983.1_g000009 Rmu_sc0040696.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430270
rosa_rugosa	Rorug02G0647400 Rorug02G0647400 Rorug02G0647400 Rorug02G0647500 Rorug02G0647600 Rorug02G0647600
rosa_samantha	Rh3AG050200 Rh3BG051400 Rh3CG051600 Rh3DG052200
rosa_wichuraiana	Rw3G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	322, 406
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	453
AccII	CGCG	1 cut(s)	385
AcoI	YGGCCR	2 cut(s)	173, 415
AcsI	RAATTY	1 cut(s)	420
AfaI	GTAC	2 cut(s)	349, 375
AfiI	CCNNNNNNNGG	2 cut(s)	480, 481
AgsI	TTSAA	4 cut(s)	7, 257, 494, 518
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	2 cut(s)	173, 415
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	420
Asp718I	GGTACC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	2 cut(s)	475, 476
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	474
BaeGI	GKGCMC	2 cut(s)	87, 124
BalI	TGGCCA	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	448
BcnI	CCSGG	2 cut(s)	475, 476
BfuAI	ACCTGC	2 cut(s)	322, 406
BglI	GCCNNNNNGGC	2 cut(s)	407, 434
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	475, 476
BmeT110I	CYCGRG	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	475, 476
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	475, 476
BsaJI	CCNNGG	2 cut(s)	473, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 481
Bse118I	RCCGGY	2 cut(s)	171, 344
Bse1I	ACTGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	473, 474
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	480, 481
BseNI	ACTGG	1 cut(s)	273
BseSI	GKGCMC	2 cut(s)	87, 124
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	2 cut(s)	175, 417
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	3 cut(s)	172, 345, 475
BslFI	GGGAC	2 cut(s)	491, 497
BslI	CCNNNNNNNGG	2 cut(s)	480, 481
BsmFI	GGGAC	2 cut(s)	491, 497
BsnI	GGCC	2 cut(s)	175, 417
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	87, 124
BspANI	GGCC	2 cut(s)	175, 417
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	2 cut(s)	322, 406
BspT107I	GGYRCC	1 cut(s)	347
BsrFI	RCCGGY	2 cut(s)	171, 344
BsrI	ACTGG	1 cut(s)	273
BssAI	RCCGGY	2 cut(s)	171, 344
BssECI	CCNNGG	2 cut(s)	473, 474
BssSI	CACGAG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
BstSCI	CCNGG	2 cut(s)	473, 474
BstSLI	GKGCMC	2 cut(s)	87, 124
BstUI	CGCG	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	448
BsuRI	GGCC	2 cut(s)	175, 417
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	266, 456
BveI	ACCTGC	2 cut(s)	322, 406
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	2 cut(s)	171, 344
Cfr9I	CCCGGG	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	348, 374
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	65, 171, 175, 248, 302, 371, 417, 428, 446
CviKI_1	RGCY	9 cut(s)	65, 171, 175, 248, 302, 371, 417, 428, 446
CviQI	GTAC	2 cut(s)	348, 374
DraI	TTTAAA	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	173, 415
Eco88I	CYCGRG	1 cut(s)	474
FaeI	CATG	1 cut(s)	70
FaiI	YATR	9 cut(s)	51, 68, 81, 178, 222, 224, 245, 395, 468
FalI	AAGNNNNNCTT	2 cut(s)	31, 540
FaqI	GGGAC	2 cut(s)	491, 497
FatI	CATG	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	462
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	175, 417
HapII	CCGG	3 cut(s)	172, 345, 475
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HpaII	CCGG	3 cut(s)	172, 345, 475
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	100, 122, 454
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	3 cut(s)	100, 122, 454
HpyAV	CCTTC	3 cut(s)	16, 184, 488
HpyCH4V	TGCA	2 cut(s)	122, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	351
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	319, 389
MboII	GAAGA	2 cut(s)	208, 511
MhlI	GDGCHC	2 cut(s)	87, 124
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	1 cut(s)	420
MluNI	TGGCCA	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	6 cut(s)	47, 139, 164, 282, 313, 533
Mox20I	TGGCCA	1 cut(s)	417
MroNI	GCCGGC	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	3 cut(s)	231, 366, 546
Msp20I	TGGCCA	1 cut(s)	417
MspI	CCGG	3 cut(s)	172, 345, 475
MspR9I	CCNGG	2 cut(s)	475, 476
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
NaeI	GCCGGC	1 cut(s)	173
NciI	CCSGG	2 cut(s)	475, 476
NgoMIV	GCCGGC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	2 cut(s)	319, 389
PdiI	GCCGGC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	349
RsaI	GTAC	2 cut(s)	349, 375
RsaNI	GTAC	2 cut(s)	348, 374
SaqAI	TTAA	3 cut(s)	231, 366, 546
SatI	GCNGC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	475, 476
SduI	GDGCHC	2 cut(s)	87, 124
SetI	ASST	6 cut(s)	27, 114, 293, 336, 373, 400
SmaI	CCCGGG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	473, 474
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	420
TatI	WGTACW	1 cut(s)	373
Tru1I	TTAA	3 cut(s)	231, 366, 546
Tru9I	TTAA	3 cut(s)	231, 366, 546
TscAI	CASTG	2 cut(s)	273, 463
TseFI	GTSAC	2 cut(s)	319, 389
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	2 cut(s)	319, 389
TspDTI	ATGAA	2 cut(s)	104, 268
TspMI	CCCGGG	1 cut(s)	474
TspRI	CASTG	2 cut(s)	273, 463
VneI	GTGCAC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	420
XmaI	CCCGGG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.