FvH4_6g04770

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006833
Physical Location & Seq
Forward (+)
2633511 .. 2635178
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g04770.t2

Sequence Viewer

Length: 561 bp
ATGCTGAAACAGGTGTTTGGGAAGGTGTGGAACAAAGGGGCTTACGCTTGCGGCGACAGAATCAGGCCTTGCTTGTATGTGCCCACTAGCGGTTTCCACAATTCGCAGGTTCATCGTGCGCCGAGAAGTTTTTTTGGGGTAGAGGATTTCGTTGATGATAACAATAGTCGGCCGTACACTTATCAGAAGGAAAAGAAGTCCAAAAATCCACAGAAGCACGTATCATTTAAGCAGCGCACCATAGCCTACTTAGAGCCATTTACACTTGATGTGTTCATCTCAAAACGGTTTGTGTCAGCCTCTATCACCCACAGGGTAACATGCAAGCAGGTTGCAGTTGCTGGAACCAACTCCAAAGACATAAAAGCTGCACTCAAGTCCCGTTGCGATATACCTGCCTGTATAGCCATTGGCCAAATTTTAGCAGATAGGGCAAGAGAAGCGGATGTCTATACCGCGTCATATACTCCAAGGGACAGAGACAAGTTTGAAGGGAAGATTAGGGCAGTTGTCCAATCCCTCATTGATAGTGGGATTGATGTTAAAATTTATTTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

187

Amino Acids

21.03

Weight (kDa)

9.59

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 64 - 180 2.3e-07 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 97, 319, 403
AccII CGCG 1 cut(s) 458
AciI CCGC 4 cut(s) 51, 90, 443, 456
AcoI YGGCCR 2 cut(s) 170, 412
AcsI RAATTY 2 cut(s) 417, 546
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 491
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
Alw26I GTCTC 1 cut(s) 474
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 3 cut(s) 65, 170, 412
ApeKI GCWGC 2 cut(s) 232, 368
ApoI RAATTY 2 cut(s) 417, 546
AspLEI GCGC 2 cut(s) 121, 237
AsuHPI GGTGA 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 84
BalI TGGCCA 1 cut(s) 414
BbvI GCAGC 2 cut(s) 244, 355
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 4 cut(s) 95, 129, 377, 411
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 1 cut(s) 87
BfuAI ACCTGC 3 cut(s) 97, 319, 403
BisI GCNGC 3 cut(s) 52, 233, 369
BlsI GCNGC 3 cut(s) 53, 234, 370
BmiI GGNNCC 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 470
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 84
BseX3I CGGCCG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 244, 355
BsgI GTGCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 458
Bsh1285I CGRYCG 1 cut(s) 173
BshFI GGCC 3 cut(s) 67, 172, 414
BsiEI CGRYCG 1 cut(s) 173
BslFI GGGAC 2 cut(s) 364, 488
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 474
BsmFI GGGAC 2 cut(s) 364, 488
BsnI GGCC 3 cut(s) 67, 172, 414
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 4 cut(s) 51, 90, 443, 456
BspANI GGCC 3 cut(s) 67, 172, 414
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 3 cut(s) 97, 319, 403
BssECI CCNNGG 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 288
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 49, 326
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 451
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 2 cut(s) 121, 237
BstMAI GTCTC 1 cut(s) 474
BstMCI CGRYCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 404, 431, 440
BstNSI RCATGY 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 2 cut(s) 244, 355
BstZI CGGCCG 1 cut(s) 170
BsuRI GGCC 3 cut(s) 67, 172, 414
BtsCI GGATG 1 cut(s) 451
BveI ACCTGC 3 cut(s) 97, 319, 403
Cac8I GCNNGC 2 cut(s) 49, 326
CaiI CAGNNNCTG 1 cut(s) 341
CfoI GCGC 2 cut(s) 121, 237
CseI GACGC 1 cut(s) 447
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 321
CviJI RGCY 9 cut(s) 41, 67, 172, 245, 256, 299, 368, 407, 414
CviKI_1 RGCY 9 cut(s) 41, 67, 172, 245, 256, 299, 368, 407, 414
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 250
EaeI YGGCCR 2 cut(s) 170, 412
EagI CGGCCG 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 470
Eco147I AGGCCT 1 cut(s) 67
Eco52I CGGCCG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 1 cut(s) 324
FaiI YATR 9 cut(s) 78, 242, 322, 362, 392, 404, 453, 463, 465
FaqI GGGAC 2 cut(s) 364, 488
FatI CATG 1 cut(s) 320
Fnu4HI GCNGC 3 cut(s) 52, 233, 369
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 3 cut(s) 52, 233, 369
FspBI CTAG 1 cut(s) 87
GlaI GCGC 2 cut(s) 120, 236
GluI GCNGC 3 cut(s) 52, 233, 369
HaeIII GGCC 3 cut(s) 67, 172, 414
HgaI GACGC 1 cut(s) 447
HhaI GCGC 2 cut(s) 121, 237
Hin1II CATG 1 cut(s) 324
Hin6I GCGC 2 cut(s) 119, 235
HinP1I GCGC 2 cut(s) 119, 235
HinfI GANTC 1 cut(s) 60
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 186
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 3 cut(s) 16, 181, 485
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 3 cut(s) 324, 335, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 431, 440
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 1 cut(s) 324
HspAI GCGC 2 cut(s) 119, 235
LpnPI CCDG 7 cut(s) 49, 92, 298, 314, 327, 408, 412
Lsp1109I GCAGC 2 cut(s) 244, 355
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 316
MboII GAAGA 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 84
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 3 cut(s) 100, 417, 546
MluNI TGGCCA 1 cut(s) 414
MnlI CCTC 3 cut(s) 136, 310, 530
Mox20I TGGCCA 1 cut(s) 414
MscI TGGCCA 1 cut(s) 414
MseI TTAA 2 cut(s) 228, 543
Msp20I TGGCCA 1 cut(s) 414
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 3 cut(s) 404, 431, 440
NlaIII CATG 1 cut(s) 324
NlaIV GGNNCC 1 cut(s) 346
NmeAIII GCCGAG 1 cut(s) 147
NspI RCATGY 1 cut(s) 324
PceI AGGCCT 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 3 cut(s) 53, 234, 370
Ppu21I YACGTR 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 228, 543
SatI GCNGC 3 cut(s) 52, 233, 369
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 15, 27, 111, 222, 333, 370, 397
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 100, 417, 546
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 4 cut(s) 51, 90, 443, 456
SspMI CTAG 1 cut(s) 87
StuI AGGCCT 1 cut(s) 67
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 222
TasI AATT 3 cut(s) 100, 417, 546
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 2 cut(s) 228, 543
Tru9I TTAA 2 cut(s) 228, 543
TseI GCWGC 2 cut(s) 232, 368
TspDTI ATGAA 2 cut(s) 101, 265
XapI RAATTY 2 cut(s) 417, 546
XceI RCATGY 1 cut(s) 324
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.