RLG00000025528

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006833
Physical Location & Seq
Reverse (-)
46484858 .. 46485923
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025528

Sequence Viewer

Length: 564 bp
ATGTTGAAGCAGGTGTTTGGGAAGGTGTGGAACAAAGGGGTTTATGGCTATGGAGGAAGCAGAATTAGACCTTGCTTCTATGTGCCCACTAGTGGTTTCCACAATGCACAGGTTCATCGTGCACCGAGAAGTTTTTTTGGGGTAGAGGATTTTGTTGATGATAACAATAGTCGGCCATACACTTATCAGAAGGAAAAGAAGTCCAAAAATCCACAGAAGCATGTATCATTTAAGCAGCGGACCATAGCATACTTAGAGCCATTTACACTTGATGTGTTCATCTCAAAACGGTTTGTGTCAGCCTCAATCACCCACAGGGTAACATGCAAGCAGGTTGCAGTTGCCGGTACCAACTCCAAAGACATAAAAGCTGCACTCAAGTCTCGATGTGATATACCTGCCTGTATAGCCATCGGCCAAATTTTAGCCGATAGGGCCAGAGAAGCGGATGTCTATACCGCTTCATATACTCCAAGGGACAGAGACAAGTTTGAAGGGAAGATTAGAGCAGTTGTTCAATCCCTCATTGATAGTGGGATTGATGTTAAAATTTATCTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

188

Amino Acids

21.1

Weight (kDa)

9.76

Isoelectric Point (pI)

26.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 65 - 181 2.3e-07 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 322, 406
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AciI CCGC 3 cut(s) 238, 446, 459
AcoI YGGCCR 2 cut(s) 173, 415
AcsI RAATTY 2 cut(s) 420, 549
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 3 cut(s) 7, 494, 518
AhlI ACTAGT 1 cut(s) 89
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 2 cut(s) 387, 477
Alw44I GTGCAC 1 cut(s) 120
AoxI GGCC 3 cut(s) 173, 415, 435
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 235, 371
ApoI RAATTY 2 cut(s) 420, 549
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 240, 435
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 2 cut(s) 87, 124
BanI GGYRCC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 2 cut(s) 247, 358
BccI CCATC 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 387, 477
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 1 cut(s) 90
BfuAI ACCTGC 2 cut(s) 322, 406
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 2 cut(s) 236, 372
BlsI GCNGC 2 cut(s) 237, 373
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 240, 435
BmiI GGNNCC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 473
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 473
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 1 cut(s) 92
BseSI GKGCMC 2 cut(s) 87, 124
BseXI GCAGC 2 cut(s) 247, 358
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 175, 417, 437
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 345
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 387, 477
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 3 cut(s) 175, 417, 437
Bsp1286I GDGCHC 2 cut(s) 87, 124
BspACI CCGC 3 cut(s) 238, 446, 459
BspANI GGCC 3 cut(s) 175, 417, 437
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 2 cut(s) 322, 406
BspT107I GGYRCC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 473
Bst4CI ACNGT 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 1 cut(s) 253
BstF5I GGATG 1 cut(s) 454
BstMAI GTCTC 2 cut(s) 387, 477
BstMWI GCNNNNNNNGC 3 cut(s) 407, 434, 443
BstNSI RCATGY 2 cut(s) 224, 327
BstSLI GKGCMC 2 cut(s) 87, 124
BstV1I GCAGC 2 cut(s) 247, 358
BsuRI GGCC 3 cut(s) 175, 417, 437
BtsCI GGATG 1 cut(s) 454
BveI ACCTGC 2 cut(s) 322, 406
Cac8I GCNNGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 240, 435
Csp6I GTAC 1 cut(s) 348
CviAII CATG 2 cut(s) 221, 324
CviJI RGCY 9 cut(s) 48, 175, 259, 302, 371, 410, 417, 428, 437
CviKI_1 RGCY 9 cut(s) 48, 175, 259, 302, 371, 410, 417, 428, 437
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 253
EaeI YGGCCR 2 cut(s) 173, 415
Eco130I CCWWGG 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 2 cut(s) 224, 327
FaqI GGGAC 1 cut(s) 491
FatI CATG 2 cut(s) 220, 323
Fnu4HI GCNGC 2 cut(s) 236, 372
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 2 cut(s) 236, 372
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 236, 372
HaeIII GGCC 3 cut(s) 175, 417, 437
HapII CCGG 1 cut(s) 345
Hin1II CATG 2 cut(s) 224, 327
HpaII CCGG 1 cut(s) 345
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 189
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 16, 184, 488
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 107, 122, 327, 338, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 434, 443
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 2 cut(s) 224, 327
KpnI GGTACC 1 cut(s) 351
LpnPI CCDG 7 cut(s) 95, 301, 317, 358, 411, 415, 451
Lsp1109I GCAGC 2 cut(s) 247, 358
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 319
MboII GAAGA 1 cut(s) 511
MhlI GDGCHC 2 cut(s) 87, 124
MluCI AATT 3 cut(s) 63, 420, 549
MnlI CCTC 4 cut(s) 47, 139, 313, 533
MseI TTAA 2 cut(s) 231, 546
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 407, 434, 443
NlaIII CATG 2 cut(s) 224, 327
NlaIV GGNNCC 1 cut(s) 349
NspI RCATGY 2 cut(s) 224, 327
PkrI GCNGC 2 cut(s) 237, 373
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 240, 435
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 231, 546
SatI GCNGC 2 cut(s) 236, 372
Sau96I GGNCC 2 cut(s) 240, 435
SduI GDGCHC 2 cut(s) 87, 124
SetI ASST 7 cut(s) 15, 27, 73, 114, 336, 373, 400
SinI GGWCC 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 3 cut(s) 63, 420, 549
SsiI CCGC 3 cut(s) 238, 446, 459
SspMI CTAG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 1 cut(s) 291
TaqI TCGA 1 cut(s) 385
TasI AATT 3 cut(s) 63, 420, 549
Tru1I TTAA 2 cut(s) 231, 546
Tru9I TTAA 2 cut(s) 231, 546
TseI GCWGC 2 cut(s) 235, 371
TspDTI ATGAA 3 cut(s) 104, 268, 453
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 2 cut(s) 420, 549
XceI RCATGY 2 cut(s) 224, 327
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.