Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006833

Physical Location & Seq

Genomic Coordinates Reverse (-)

22500937 .. 22501804

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCTTGCTTGTATGTGCCTACGAGTGATGTTCACAATGGACAGATTCATTGTGCACCGAGAAGTTTTTTTGGGGTAGAGGATTTCCTCGATGATGACAATAGCCGCCCATACACTTACCAGAAGGAGAAGTCCAAAAATCCAACAAAACATATATCATTTAAACAGCGCACCGTAGCCTACATTGAACCGTTTACACTGGATGTGTTCATCTCAAAGCGGTTTGTGTCAGCCTCGATCACCCACAGGGTCACAACCAAGCAGGTTGCAACTGCGGGTACCAACTCCAAAGACATTAAAGCTGTACTCAAGTCACGTTGCGACATACCTGCCTGTTTGGCGGTCGGGCAAATTTTAGCCTATAGGGCAAGAGAAGCCGATGTTTATACTGCTGCTTGTACTCCCCGGGACAGGGACAAGTTTGAAGGGAAGATTAGAGCAGTTGTTCAATCCCTCATTGATAATGGGATTGATGTTAAAGTTTATCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

165

Amino Acids

18.44

Weight (kDa)

8.95

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08845 AT1G08845 AT1G08845
fragaria_vesca	FvH4_6g04770 FvH4_6g04770
malus_domestica	MD04G1213500.v1.1 MD12G1228600.v1.1
prunus_persica	Prupe.6G333700_v2.0.a1
pyrus_communis	pycom04g18910 pycom12g21300
rosa_chinensis	RchiOBHm_Chr3g0453221
rosa_laevigata	RLG00000025528
rosa_multiflora	Rmu_sc0003983.1_g000009 Rmu_sc0040696.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430270
rosa_rugosa	Rorug02G0647400 Rorug02G0647400 Rorug02G0647400 Rorug02G0647500 Rorug02G0647600 Rorug02G0647600
rosa_samantha	Rh3AG050200 Rh3BG051400 Rh3CG051600 Rh3DG052200
rosa_wichuraiana	Rw3G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	253, 337
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	4 cut(s)	106, 220, 275, 341
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	3 cut(s)	280, 306, 400
AfiI	CCNNNNNNNGG	2 cut(s)	411, 412
AgsI	TTSAA	3 cut(s)	188, 425, 449
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	405
ApaLI	GTGCAC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	351
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	171
AsuC2I	CCSGG	2 cut(s)	406, 407
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	379
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BcnI	CCSGG	2 cut(s)	406, 407
BfmI	CTRYAG	1 cut(s)	361
BfuAI	ACCTGC	2 cut(s)	253, 337
BglI	GCCNNNNNGGC	2 cut(s)	338, 365
BisI	GCNGC	2 cut(s)	106, 393
BlsI	GCNGC	2 cut(s)	107, 394
Bme1390I	CCNGG	2 cut(s)	406, 407
BmeT110I	CYCGRG	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	406, 407
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	2 cut(s)	406, 407
BsaJI	CCNNGG	2 cut(s)	404, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 412
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	404, 405
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	411, 412
BseNI	ACTGG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	379
Bsh1285I	CGRYCG	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	2 cut(s)	422, 428
BslI	CCNNNNNNNGG	2 cut(s)	411, 412
BsmFI	GGGAC	2 cut(s)	422, 428
BsoBI	CYCGRG	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	4 cut(s)	106, 220, 275, 341
BspLI	GGNNCC	1 cut(s)	280
BspMI	ACCTGC	2 cut(s)	253, 337
BspT107I	GGYRCC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	2 cut(s)	404, 405
BssMI	GATC	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	175, 192
BstF5I	GGATG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 365, 374
BstSCI	CCNGG	2 cut(s)	404, 405
BstSFI	CTRYAG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	197
BveI	ACCTGC	2 cut(s)	253, 337
CfoI	GCGC	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	405
Csp6I	GTAC	3 cut(s)	279, 305, 399
CviJI	RGCY	6 cut(s)	105, 179, 233, 302, 359, 377
CviKI_1	RGCY	6 cut(s)	105, 179, 233, 302, 359, 377
CviQI	GTAC	3 cut(s)	279, 305, 399
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
DraI	TTTAAA	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	405
FaiI	YATR	7 cut(s)	15, 112, 153, 155, 326, 363, 387
FalI	AAGNNNNNCTT	1 cut(s)	471
FaqI	GGGAC	2 cut(s)	422, 428
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	106, 393
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	106, 393
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	2 cut(s)	106, 393
HapII	CCGG	1 cut(s)	406
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	406
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	34, 56, 195
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	3 cut(s)	34, 56, 195
HpyAV	CCTTC	2 cut(s)	118, 419
HpyCH4III	ACNGT	2 cut(s)	175, 192
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	56, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 365, 374
HpySE526I	ACGT	1 cut(s)	316
HspAI	GCGC	1 cut(s)	169
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	134, 185, 232, 248, 342, 346, 397, 419
Lsp1109I	GCAGC	1 cut(s)	379
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	250, 312
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	73, 98, 244, 464
MseI	TTAA	3 cut(s)	162, 297, 477
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	406, 407
MwoI	GCNNNNNNNGC	3 cut(s)	338, 365, 374
NciI	CCSGG	2 cut(s)	406, 407
NdeII	GATC	1 cut(s)	237
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	250, 312
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	107, 394
PspN4I	GGNNCC	1 cut(s)	280
RsaI	GTAC	3 cut(s)	280, 306, 400
RsaNI	GTAC	3 cut(s)	279, 305, 399
SaqAI	TTAA	3 cut(s)	162, 297, 477
SatI	GCNGC	2 cut(s)	106, 393
Sau3AI	GATC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	406, 407
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	4 cut(s)	267, 304, 319, 331
SfcI	CTRYAG	1 cut(s)	361
SmaI	CCCGGG	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	4 cut(s)	106, 220, 275, 341
StyD4I	CCNGG	2 cut(s)	404, 405
TaaI	ACNGT	2 cut(s)	175, 192
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	90, 236
TasI	AATT	1 cut(s)	351
TatI	WGTACW	2 cut(s)	304, 398
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	3 cut(s)	162, 297, 477
Tru9I	TTAA	3 cut(s)	162, 297, 477
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	2 cut(s)	250, 312
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	2 cut(s)	250, 312
TspDTI	ATGAA	2 cut(s)	38, 199
TspMI	CCCGGG	1 cut(s)	405
TspRI	CASTG	1 cut(s)	204
VneI	GTGCAC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	351
XmaI	CCCGGG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.