Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006833

Physical Location & Seq

Genomic Coordinates Reverse (-)

29004305 .. 29005862

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G333700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTGAAGCATGTCTTTGGGAAGGTGTGGAACAAAGGGGTTCATGTGTATGGAGGAAACAGAGTTCTGCCTTGCCTGTATGTGTCCACCGGTGGTTTCCACAGTGGGCAGGTCAATTGTGCACAGAGAAGTTTTTTCGGGGTAGAGGATTTCCTTGATGATAACAATAGCCGGCCATACACTTACCAGAAGGAGAAGATATCCAAAAATCCACAAAAACATGTATCATTCAAACAGCGCACCATAGCCTACATTGAACCATTTACACTTGATGTGTTCATCTCAAAGCGGTTTGTTTCAGCCTCTATCACCCACCGGGTGACCTGCAAGCAGGTTGCAGTTGCGGGTACCAACTCCAAAGACATTAAAGCTGTCCTCAAGTCTCGCTGTGATATACCGGCCTGTTTGGCCGTCGGCCAAATCTTAGCCGATAGGGCAAGAGAAGCTGATGTCTACACTGCTGCTTATACTCCCAGGGACAGGGACAAGTTTGAAGGGAAGATTAGGGCAGTTGTTCAATCCCTCATTGATAGTGGGATTGATGTTAAAGTTTATCTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

188

Amino Acids

20.97

Weight (kDa)

9.45

Isoelectric Point (pI)

24.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08845 AT1G08845 AT1G08845
fragaria_vesca	FvH4_6g04770 FvH4_6g04770
malus_domestica	MD04G1213500.v1.1 MD12G1228600.v1.1
prunus_persica	Prupe.6G333700_v2.0.a1
pyrus_communis	pycom04g18910 pycom12g21300
rosa_chinensis	RchiOBHm_Chr3g0453221
rosa_laevigata	RLG00000025528
rosa_multiflora	Rmu_sc0003983.1_g000009 Rmu_sc0040696.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430270
rosa_rugosa	Rorug02G0647400 Rorug02G0647400 Rorug02G0647400 Rorug02G0647500 Rorug02G0647600 Rorug02G0647600
rosa_samantha	Rh3AG050200 Rh3BG051400 Rh3CG051600 Rh3DG052200
rosa_wichuraiana	Rw3G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	100, 322, 332
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	2 cut(s)	289, 344
AcoI	YGGCCR	3 cut(s)	173, 408, 415
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	480
AflIII	ACRYGT	1 cut(s)	220
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	5 cut(s)	7, 232, 257, 494, 518
AjnI	CCWGG	1 cut(s)	473
AloI	GAACNNNNNNTCC	2 cut(s)	48, 80
AluBI	AGCT	2 cut(s)	371, 446
AluI	AGCT	2 cut(s)	371, 446
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	387
Alw44I	GTGCAC	1 cut(s)	120
AoxI	GGCC	4 cut(s)	173, 399, 408, 415
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	461
AsiGI	ACCGGT	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	301, 331
BaeGI	GKGCMC	1 cut(s)	124
BanI	GGYRCC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	387
BfuAI	ACCTGC	3 cut(s)	100, 322, 332
BglI	GCCNNNNNGGC	2 cut(s)	407, 434
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	317, 475
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	317, 475
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	473, 474
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse118I	RCCGGY	3 cut(s)	89, 171, 397
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	473, 474
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseSI	GKGCMC	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	448
BshFI	GGCC	4 cut(s)	175, 401, 410, 417
BshNI	GGYRCC	1 cut(s)	347
BshTI	ACCGGT	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	4 cut(s)	90, 172, 316, 398
BslFI	GGGAC	2 cut(s)	491, 497
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	491, 497
BsnI	GGCC	4 cut(s)	175, 401, 410, 417
Bsp1286I	GDGCHC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	289, 344
BspANI	GGCC	4 cut(s)	175, 401, 410, 417
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	3 cut(s)	100, 322, 332
BspT107I	GGYRCC	1 cut(s)	347
BsrFI	RCCGGY	3 cut(s)	89, 171, 397
BssAI	RCCGGY	3 cut(s)	89, 171, 397
BssECI	CCNNGG	2 cut(s)	473, 474
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	173, 329
BstDEI	CTNAG	1 cut(s)	424
BstEII	GGTNACC	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	2 cut(s)	14, 224
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	315, 473
BstSLI	GKGCMC	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	448
BsuRI	GGCC	4 cut(s)	175, 401, 410, 417
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	109, 456
BveI	ACCTGC	3 cut(s)	100, 322, 332
Cac8I	GCNNGC	2 cut(s)	173, 329
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	3 cut(s)	89, 171, 397
Csp6I	GTAC	1 cut(s)	348
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	3 cut(s)	11, 44, 221
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	424
DraIII	CACNNNGTG	1 cut(s)	319
EaeI	YGGCCR	3 cut(s)	173, 408, 415
Eco32I	GATATC	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	473
EcoRV	GATATC	1 cut(s)	201
FaeI	CATG	3 cut(s)	14, 47, 224
FaiI	YATR	9 cut(s)	12, 45, 51, 81, 178, 222, 245, 395, 468
FalI	AAGNNNNNCTT	2 cut(s)	31, 540
FaqI	GGGAC	2 cut(s)	491, 497
FatI	CATG	3 cut(s)	10, 43, 220
FauI	CCCGC	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	462
Fsp4HI	GCNGC	1 cut(s)	462
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	175, 401, 410, 417
HapII	CCGG	4 cut(s)	90, 172, 316, 398
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	14, 47, 224
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HpaII	CCGG	4 cut(s)	90, 172, 316, 398
HphI	GGTGA	2 cut(s)	301, 331
Hpy166II	GTNNAC	3 cut(s)	87, 122, 454
Hpy188III	TCNNGA	1 cut(s)	557
Hpy8I	GTNNAC	3 cut(s)	87, 122, 454
Hpy99I	CGWCG	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	16, 184, 488
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	122, 327, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
HpyF3I	CTNAG	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	14, 47, 224
HspAI	GCGC	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	351
KroI	GCCGGC	1 cut(s)	171
KroNI	GCCGGC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	448
MaeIII	GTNAC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	208, 511
MfeI	CAATTG	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	5 cut(s)	47, 139, 313, 386, 533
MroNI	GCCGGC	1 cut(s)	171
MseI	TTAA	2 cut(s)	366, 546
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	4 cut(s)	90, 172, 316, 398
MspR9I	CCNGG	2 cut(s)	317, 475
MunI	CAATTG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
NaeI	GCCGGC	1 cut(s)	173
NciI	CCSGG	1 cut(s)	317
NgoMIV	GCCGGC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	14, 47, 224
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	2 cut(s)	14, 224
PasI	CCCWGGG	1 cut(s)	474
PciI	ACATGT	1 cut(s)	220
PdiI	GCCGGC	1 cut(s)	173
PinAI	ACCGGT	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	463
PscI	ACATGT	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	473
PspEI	GGTNACC	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	366, 546
SatI	GCNGC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	317, 475
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	6 cut(s)	27, 114, 326, 336, 373, 448
SfiI	GGCCNNNNNGGCC	1 cut(s)	407
SgrAI	CRCCGGYG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	2 cut(s)	289, 344
StyD4I	CCNGG	2 cut(s)	315, 473
TaaI	ACNGT	1 cut(s)	104
TasI	AATT	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	366, 546
Tru9I	TTAA	2 cut(s)	366, 546
TscAI	CASTG	2 cut(s)	109, 463
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	32, 268
TspRI	CASTG	2 cut(s)	109, 463
VneI	GTGCAC	1 cut(s)	120
XceI	RCATGY	2 cut(s)	14, 224
XmiI	GTMKAC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.