AT1G09290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012271
Physical Location & Seq
Reverse (-)
3001439 .. 3003762
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09290.1

Sequence Viewer

Length: 1047 bp
ATGGCTGCTGTAGAAGAAGTAGACGATGTTGGAAGAACAATAGAGGAAGAGACTGTGTGTGAAAAAAGAGAAAGAGGAGAGGAAGCTGAAACATTGACTCCATGGGAGCAACACTCCAGCATCATAAGCATCCCTCGATTCGACTACAAAGCTCCCTCTTCTCTGCTTCATCATTCTCATTCCGGATTCCTCGTCACCTGCAACATCAAAAGGGAGAAAAGTGCTACTAAAGAGGTCATGTCCATCCTTGGAAAGTATATTGGGTCCATGCATGAGGAGAAACCTGAAGTTCTAAACTCTACTGCATCCAAAAAACAAAAAGTTTGTGCACAAGAGACAGAGGAAGGCGGAGAGAAGACTGTACCTCTTGAGAATGATGCCTTGCAGGAAACAGGTGAAAATCCAAATGTTGAGGATCTTAAATTAGCAAATGAAGAACACAATTCTCTCATGTCATTGGTTAAGCTAACAAAGAGTGGCTTGCTTCTCTTTACTTTCCCTGTTGAAAACTCTCCCAATACAACGAATATCGTATCACGAGTCTTCCAGTCTATGGAATCTGGAGCTTTGAAGGCACCAATCTGGTGCCATCGGATATTCCCAGTTCAAGCTACTTGTGGTTTGACAGAGAAAGAACTTCGGGAAACAGTATCAAAGCTTGTTCAGCGGTTTGTCAATGATAAAGACAATACACTATCAAAACCTGTGAAGTTTGCAGCTGGGTATCAACGTAGAGGTGCGGAGGAGACGAAAGGAAAGATTCGGAAAGACGCTTCAGATGTTCTAGTTCAATGTCCGTTGCTGGACCGCATTAAATGCTTTGAAACTGTGGCAGCTGGAGTGAAAGACATTGTACCAGATTCAGTTGTGGATCTCAAATCTCCAGAGTTATGTGTTCTGGTGGAACTGTTACCGCTCTCTAGAATATCAAGTGGCTCCTTTGTAGCTGCTGTTTCAGTGCTTCCACATAGACTCGTTAGCACAAAGCCGAAACTCTGCATCAAGCCTCTAGTCCCTGAATCCAAACACAAAAAGGGACCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

348

Amino Acids

38.5

Weight (kDa)

6.35

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09290
fragaria_vesca FvH4_4g35990
malus_domestica MD16G1010000.v1.1
prunus_persica Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1
pyrus_communis pycom16g00980
rosa_chinensis RchiOBHm_Chr4g0445621
rosa_laevigata RLG00000005724
rosa_multiflora Rmu_sc0019383.1_g000001
rosa_roxburghii Rroxscaffold_5G00386100
rosa_rugosa Rorug04G0363100 Rorug04G0363200
rosa_samantha Rh4AG424600 Rh4AG425000 Rh4BG436800 Rh4CG451300 Rh4DG433300
rosa_wichuraiana Rw4G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 2 cut(s) 574, 585
AccB7I CCANNNNNTGG 1 cut(s) 553
AccBSI CCGCTC 1 cut(s) 916
AccI GTMKAC 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 182
AciI CCGC 5 cut(s) 348, 667, 740, 808, 914
AclWI GGATC 2 cut(s) 423, 879
AcuI CTGAAG 2 cut(s) 306, 759
AfaI GTAC 2 cut(s) 363, 855
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 5 cut(s) 506, 571, 608, 791, 824
AluBI AGCT 9 cut(s) 86, 152, 466, 566, 611, 658, 719, 836, 947
AluI AGCT 9 cut(s) 86, 152, 466, 566, 611, 658, 719, 836, 947
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 3 cut(s) 44, 329, 740
Alw44I GTGCAC 1 cut(s) 327
AlwI GGATC 2 cut(s) 423, 879
Aor13HI TCCGGA 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 327
ApeKI GCWGC 4 cut(s) 5, 716, 833, 947
AspS9I GGNCC 3 cut(s) 264, 805, 1037
AsuHPI GGTGA 2 cut(s) 187, 407
AvaII GGWCC 3 cut(s) 264, 805, 1037
BaeGI GKGCMC 1 cut(s) 331
BanI GGYRCC 2 cut(s) 574, 585
BauI CACGAG 1 cut(s) 537
BbsI GAAGAC 2 cut(s) 362, 535
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 728, 845, 934
BccI CCATC 2 cut(s) 251, 597
BcoDI GTCTC 3 cut(s) 44, 329, 740
BfaI CTAG 3 cut(s) 785, 921, 1010
BfmI CTRYAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 4 cut(s) 6, 717, 834, 948
BlsI GCNGC 4 cut(s) 7, 718, 835, 949
Bme18I GGWCC 3 cut(s) 264, 805, 1037
BmgT120I GGNCC 3 cut(s) 264, 805, 1037
BmiI GGNNCC 5 cut(s) 265, 576, 587, 937, 1038
BmrI ACTGGG 1 cut(s) 596
BmsI GCATC 5 cut(s) 129, 138, 314, 367, 1008
BmuI ACTGGG 1 cut(s) 596
BpiI GAAGAC 2 cut(s) 362, 535
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 4 cut(s) 100, 582, 858, 867
BpuEI CTTGAG 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 101, 247
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 2 cut(s) 547, 602
BseAI TCCGGA 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 101, 247
BseGI GGATG 3 cut(s) 129, 243, 305
BseLI CCNNNNNNNGG 1 cut(s) 553
BseNI ACTGG 2 cut(s) 547, 602
BseRI GAGGAG 3 cut(s) 90, 290, 758
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 3 cut(s) 728, 845, 934
BseYI CCCAGC 1 cut(s) 719
BshNI GGYRCC 2 cut(s) 574, 585
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 998
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 3 cut(s) 44, 329, 740
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 998
Bsp1286I GDGCHC 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 2 cut(s) 415, 871
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 5 cut(s) 348, 667, 740, 808, 914
BspEI TCCGGA 1 cut(s) 182
BspLI GGNNCC 5 cut(s) 265, 576, 587, 937, 1038
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 2 cut(s) 423, 879
BspT107I GGYRCC 2 cut(s) 574, 585
BsrBI CCGCTC 1 cut(s) 916
BsrI ACTGG 2 cut(s) 547, 602
BssECI CCNNGG 2 cut(s) 101, 247
BssMI GATC 2 cut(s) 415, 871
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 2 cut(s) 101, 247
Bst2BI CACGAG 1 cut(s) 537
Bst4CI ACNGT 5 cut(s) 55, 361, 649, 829, 909
Bst6I CTCTTC 2 cut(s) 42, 163
BstAPI GCANNNNNTGC 1 cut(s) 816
BstC8I GCNNGC 1 cut(s) 482
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 129, 243, 305
BstKTI GATC 2 cut(s) 418, 874
BstMAI GTCTC 3 cut(s) 44, 329, 740
BstMBI GATC 2 cut(s) 415, 871
BstMWI GCNNNNNNNGC 4 cut(s) 126, 572, 664, 816
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 728, 845, 934
BstV2I GAAGAC 2 cut(s) 362, 535
BstX2I RGATCY 2 cut(s) 415, 871
BstYI RGATCY 2 cut(s) 415, 871
BtgI CCRYGG 1 cut(s) 101
BtsCI GGATG 3 cut(s) 129, 243, 305
BtsIMutI CAGTG 1 cut(s) 963
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 482
Cfr13I GGNCC 3 cut(s) 264, 805, 1037
CseI GACGC 1 cut(s) 779
Csp6I GTAC 2 cut(s) 362, 854
CviAII CATG 5 cut(s) 102, 238, 268, 272, 451
CviQI GTAC 2 cut(s) 362, 854
DpnI GATC 2 cut(s) 417, 873
DpnII GATC 2 cut(s) 415, 871
Eam1104I CTCTTC 2 cut(s) 42, 163
EarI CTCTTC 2 cut(s) 42, 163
EciI GGCGGA 1 cut(s) 363
Eco130I CCWWGG 2 cut(s) 101, 247
Eco47I GGWCC 3 cut(s) 264, 805, 1037
Eco57I CTGAAG 2 cut(s) 306, 759
EcoT14I CCWWGG 2 cut(s) 101, 247
EcoT22I ATGCAT 1 cut(s) 273
ErhI CCWWGG 2 cut(s) 101, 247
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 5 cut(s) 105, 241, 271, 275, 454
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 1 cut(s) 998
FatI CATG 5 cut(s) 101, 237, 267, 271, 450
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 6, 717, 834, 948
FokI GGATG 3 cut(s) 116, 230, 292
Fsp4HI GCNGC 4 cut(s) 6, 717, 834, 948
FspBI CTAG 3 cut(s) 785, 921, 1010
GluI GCNGC 4 cut(s) 6, 717, 834, 948
GsaI CCCAGC 1 cut(s) 723
GsuI CTGGAG 4 cut(s) 100, 582, 858, 867
HapII CCGG 1 cut(s) 183
HgaI GACGC 1 cut(s) 779
Hin1II CATG 5 cut(s) 105, 241, 271, 275, 454
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 9 cut(s) 97, 138, 186, 540, 557, 760, 860, 972, 1019
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 187, 407
Hpy166II GTNNAC 2 cut(s) 22, 329
Hpy188I TCNGA 3 cut(s) 594, 765, 778
Hpy188III TCNNGA 7 cut(s) 183, 368, 537, 561, 641, 884, 921
Hpy8I GTNNAC 2 cut(s) 22, 329
HpyAV CCTTC 2 cut(s) 338, 565
HpyCH4III ACNGT 5 cut(s) 55, 361, 649, 829, 909
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 7 cut(s) 201, 271, 305, 329, 385, 716, 999
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 572, 664, 816
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 5 cut(s) 105, 241, 271, 275, 454
Kpn2I TCCGGA 1 cut(s) 182
Kzo9I GATC 2 cut(s) 415, 871
LmnI GCTCC 4 cut(s) 106, 157, 563, 941
Lsp1109I GCAGC 3 cut(s) 728, 845, 934
LweI GCATC 5 cut(s) 129, 138, 314, 367, 1008
MaeI CTAG 3 cut(s) 785, 921, 1010
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 2 cut(s) 193, 909
MalI GATC 2 cut(s) 417, 873
MbiI CCGCTC 1 cut(s) 916
MboI GATC 2 cut(s) 415, 871
MboII GAAGA 7 cut(s) 26, 45, 59, 150, 367, 446, 535
MflI RGATCY 2 cut(s) 415, 871
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 2 cut(s) 422, 442
MlyI GAGTC 3 cut(s) 91, 549, 966
MmeI TCCRAC 1 cut(s) 10
Mph1103I ATGCAT 1 cut(s) 273
MroI TCCGGA 1 cut(s) 182
MseI TTAA 3 cut(s) 420, 462, 813
MspA1I CMGCKG 3 cut(s) 667, 719, 836
MspI CCGG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 126, 572, 664, 816
NcoI CCATGG 1 cut(s) 101
NdeII GATC 2 cut(s) 415, 871
NlaIII CATG 5 cut(s) 105, 241, 271, 275, 454
NlaIV GGNNCC 5 cut(s) 265, 576, 587, 937, 1038
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 273
PaqCI CACCTGC 1 cut(s) 206
PfeI GAWTC 6 cut(s) 138, 186, 557, 760, 860, 1019
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 4 cut(s) 7, 718, 835, 949
PleI GAGTC 3 cut(s) 91, 548, 966
PpsI GAGTC 3 cut(s) 91, 548, 966
PspFI CCCAGC 1 cut(s) 719
PspN4I GGNNCC 5 cut(s) 265, 576, 587, 937, 1038
PspPI GGNCC 3 cut(s) 264, 805, 1037
PsuI RGATCY 2 cut(s) 415, 871
PvuII CAGCTG 2 cut(s) 719, 836
RsaI GTAC 2 cut(s) 363, 855
RsaNI GTAC 2 cut(s) 362, 854
SaqAI TTAA 3 cut(s) 420, 462, 813
SatI GCNGC 4 cut(s) 6, 717, 834, 948
Sau3AI GATC 2 cut(s) 415, 871
Sau96I GGNCC 3 cut(s) 264, 805, 1037
SchI GAGTC 3 cut(s) 91, 549, 966
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 5 cut(s) 129, 138, 314, 367, 1008
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 3 cut(s) 264, 805, 1037
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 422, 442
SsiI CCGC 5 cut(s) 348, 667, 740, 808, 914
SspMI CTAG 3 cut(s) 785, 921, 1010
StyI CCWWGG 2 cut(s) 101, 247
TaaI ACNGT 5 cut(s) 55, 361, 649, 829, 909
TaiI ACGT 1 cut(s) 733
TaqI TCGA 2 cut(s) 136, 141
TasI AATT 2 cut(s) 422, 442
TfiI GAWTC 6 cut(s) 138, 186, 557, 760, 860, 1019
Tru1I TTAA 3 cut(s) 420, 462, 813
Tru9I TTAA 3 cut(s) 420, 462, 813
TscAI CASTG 1 cut(s) 963
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 4 cut(s) 5, 716, 833, 947
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 158, 447
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 1 cut(s) 963
Van91I CCANNNNNTGG 1 cut(s) 553
VneI GTGCAC 1 cut(s) 327
VpaK11BI GGWCC 3 cut(s) 264, 805, 1037
XbaI TCTAGA 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 3 cut(s) 785, 921, 1010
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.