Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012271

Physical Location & Seq

Genomic Coordinates Reverse (-)

32017530 .. 32020269

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G340600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGAAGAAGAAAGAGAGAAGGAGAAGGAGAGGGAGCTGAGTAAGAAAGAGGAGATGGCACCATGGGAGCAACACTCTACTGTAATCAGCATCCCTCGCTTCGACTACAACGCCCCTTCTTCTCTTCTCCAACACTCCCACTCTGGCTTCCTCATCACCTGCCCCATTAAGAGGGAGAAAAGCGCCACAAAAGAAGCAATCTCCCTCCTTGCAAAGTATGTTCAGTGCTTTAATAGATGCAGTTCAGAAGAAGAAGCCGTTTCTAAAAGAAGGAAGCTTTCCAAAGAGAATACAGATGGCGAGGAGGCTACTGCTAACTCTGGGGACGCGCATGATGATGTTCAAGAGGGTCCTCCTTTGCCTCCTGCGAAGGTGGATGCGGAAGGAGACACAAGCCCTCTTCTTTCGCTGGTTAAGCTTACAAAGAGTGGTTTGCTTCTCTTTACCTTCCCCAAAAGCACTTCTCCTGACGTTGTTGATACTGTATCCAAAATTATGCATTCTGTGGAATCCGGGAGTTGTGGTTCACCCCTTTGGTGTCATCGCATTTTCCCTATCCAAGCTACTTGTAGTTTGAATGAGAAGGAACTGCATGAAGTTGTATCAAAGCTTGTTCTTCAATTTTTGAACAATAATCAGAAACTTGCACGGCCCATAAAGTTTGCAGTTGGGTATAACAGAAGAGGGGTAGAAACAGAACTGAATACTTCCAAAGAAGCTTCAAATGCGGTTGTTTTGTTGGACCGTGACAAATGCTTTGAAATAGTGGCTTCTGCAGTCACAGGTGTTGTATCAGATTCAGTGGTGGACCTCAAATCTCCAGAGCTTGCTGTCCTAATTGAGCTACTACCCCTCTCTGGTGTACCCAAAGAGTCCTTAGTGGTTGCTGTTTCAGTTCTTCCTCGAAACGTCGTAAGCGTGAAGCCACGATTATGCATCAAGGCACTGGTTTCTGATACCAAAACAAAGGGCAAAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

THUMP

Protein Analysis

329

Amino Acids

35.99

Weight (kDa)

6.68

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09290
fragaria_vesca	FvH4_4g35990
malus_domestica	MD16G1010000.v1.1
prunus_persica	Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1
pyrus_communis	pycom16g00980
rosa_chinensis	RchiOBHm_Chr4g0445621
rosa_laevigata	RLG00000005724
rosa_multiflora	Rmu_sc0019383.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386100
rosa_rugosa	Rorug04G0363100 Rorug04G0363200
rosa_samantha	Rh4AG424600 Rh4AG425000 Rh4BG436800 Rh4CG451300 Rh4DG433300
rosa_wichuraiana	Rw4G036400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	61
AccII	CGCG	1 cut(s)	332
AciI	CCGC	3 cut(s)	5, 383, 731
AfaI	GTAC	1 cut(s)	867
AfiI	CCNNNNNNNGG	2 cut(s)	174, 860
AgsI	TTSAA	6 cut(s)	347, 580, 623, 631, 726, 764
AloI	GAACNNNNNNTCC	2 cut(s)	511, 543
AluBI	AGCT	8 cut(s)	40, 280, 421, 566, 613, 722, 829, 847
AluI	AGCT	8 cut(s)	40, 280, 421, 566, 613, 722, 829, 847
Alw26I	GTCTC	1 cut(s)	384
AoxI	GGCC	1 cut(s)	653
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AspLEI	GCGC	2 cut(s)	188, 334
AspS9I	GGNCC	4 cut(s)	353, 654, 745, 811
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	2 cut(s)	151, 522
AvaII	GGWCC	3 cut(s)	353, 745, 811
BanI	GGYRCC	1 cut(s)	61
BccI	CCATC	2 cut(s)	52, 293
BceAI	ACGGC	2 cut(s)	245, 668
BciVI	GTATCC	1 cut(s)	499
BcnI	CCSGG	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	3 cut(s)	353, 745, 811
BmgT120I	GGNCC	4 cut(s)	353, 654, 745, 811
BmiI	GGNNCC	2 cut(s)	63, 354
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	4 cut(s)	102, 230, 370, 948
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	807
BpuMI	CCSGG	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 860
Bse1I	ACTGG	1 cut(s)	954
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	93, 385
BseLI	CCNNNNNNNGG	2 cut(s)	174, 860
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	954
BseRI	GAGGAG	2 cut(s)	68, 320
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	655
BshNI	GGYRCC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	174, 860
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	655
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	3 cut(s)	5, 383, 731
BspANI	GGCC	1 cut(s)	655
BspCNI	CTCAG	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	63, 354
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	954
BssECI	CCNNGG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	85, 487, 749
Bst6I	CTCTTC	3 cut(s)	132, 408, 679
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	2 cut(s)	41, 880
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	93, 385
BstFNI	CGCG	1 cut(s)	332
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	188, 334
BstMAI	GTCTC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 418, 728
BstSCI	CCNGG	1 cut(s)	515
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	1 cut(s)	655
BtgI	CCRYGG	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	93, 385
BtsIMutI	CAGTG	3 cut(s)	233, 810, 947
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	831
CfoI	GCGC	2 cut(s)	188, 334
Cfr13I	GGNCC	4 cut(s)	353, 654, 745, 811
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	1 cut(s)	866
CviAII	CATG	3 cut(s)	66, 335, 596
CviQI	GTAC	1 cut(s)	866
DdeI	CTNAG	2 cut(s)	41, 880
Eam1104I	CTCTTC	3 cut(s)	132, 408, 679
EarI	CTCTTC	3 cut(s)	132, 408, 679
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	3 cut(s)	353, 745, 811
EcoO109I	RGGNCCY	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	2 cut(s)	504, 941
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	3 cut(s)	69, 338, 599
FaiI	YATR	8 cut(s)	67, 222, 336, 500, 597, 659, 678, 937
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	65, 334, 595
FokI	GGATG	2 cut(s)	80, 392
GlaI	GCGC	2 cut(s)	187, 333
GsuI	CTGGAG	1 cut(s)	807
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	655
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	2 cut(s)	188, 334
Hin1II	CATG	3 cut(s)	69, 338, 599
Hin6I	GCGC	2 cut(s)	186, 332
HinP1I	GCGC	2 cut(s)	186, 332
HindIII	AAGCTT	4 cut(s)	278, 419, 611, 720
HinfI	GANTC	3 cut(s)	512, 800, 875
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	151, 522
Hpy166II	GTNNAC	3 cut(s)	530, 811, 866
Hpy188I	TCNGA	4 cut(s)	250, 642, 799, 958
Hpy188III	TCNNGA	3 cut(s)	347, 470, 824
Hpy8I	GTNNAC	3 cut(s)	530, 811, 866
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	8 cut(s)	16, 22, 129, 267, 367, 380, 460, 580
HpyCH4III	ACNGT	3 cut(s)	85, 487, 749
HpyCH4IV	ACGT	2 cut(s)	474, 912
HpyCH4V	TGCA	8 cut(s)	215, 243, 502, 595, 650, 668, 779, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 418, 728
HpyF3I	CTNAG	2 cut(s)	41, 880
HpySE526I	ACGT	2 cut(s)	474, 912
Hsp92II	CATG	3 cut(s)	69, 338, 599
HspAI	GCGC	2 cut(s)	186, 332
LmnI	GCTCC	2 cut(s)	37, 70
LweI	GCATC	4 cut(s)	102, 230, 370, 948
MaeII	ACGT	2 cut(s)	474, 912
MaeIII	GTNAC	2 cut(s)	749, 781
MluCI	AATT	4 cut(s)	495, 623, 840, 982
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	157, 723
Mph1103I	ATGCAT	2 cut(s)	504, 941
MseI	TTAA	4 cut(s)	171, 234, 417, 985
MslI	CAYNNNNRTG	2 cut(s)	339, 934
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	517
Mva1269I	GAATGC	1 cut(s)	502
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	99, 418, 728
NciI	CCSGG	1 cut(s)	517
NcoI	CCATGG	1 cut(s)	65
NlaIII	CATG	3 cut(s)	69, 338, 599
NlaIV	GGNNCC	2 cut(s)	63, 354
NmuCI	GTSAC	2 cut(s)	749, 781
NsiI	ATGCAT	2 cut(s)	504, 941
PaqCI	CACCTGC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	512, 800
PfoI	TCCNGGA	1 cut(s)	515
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	63, 354
PspPI	GGNCC	4 cut(s)	353, 654, 745, 811
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	781
RsaI	GTAC	1 cut(s)	867
RsaNI	GTAC	1 cut(s)	866
RseI	CAYNNNNRTG	2 cut(s)	339, 934
SaqAI	TTAA	4 cut(s)	171, 234, 417, 985
Sau96I	GGNCC	4 cut(s)	353, 654, 745, 811
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	1 cut(s)	517
SfaNI	GCATC	4 cut(s)	102, 230, 370, 948
SfcI	CTRYAG	1 cut(s)	777
SinI	GGWCC	3 cut(s)	353, 745, 811
SmiMI	CAYNNNNRTG	2 cut(s)	339, 934
Sse9I	AATT	4 cut(s)	495, 623, 840, 982
SsiI	CCGC	3 cut(s)	5, 383, 731
StyD4I	CCNGG	1 cut(s)	515
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	3 cut(s)	85, 487, 749
TaiI	ACGT	2 cut(s)	477, 915
TaqI	TCGA	2 cut(s)	105, 907
TasI	AATT	4 cut(s)	495, 623, 840, 982
TfiI	GAWTC	2 cut(s)	512, 800
Tru1I	TTAA	4 cut(s)	171, 234, 417, 985
Tru9I	TTAA	4 cut(s)	171, 234, 417, 985
TscAI	CASTG	3 cut(s)	233, 810, 954
TseFI	GTSAC	2 cut(s)	749, 781
Tsp45I	GTSAC	2 cut(s)	749, 781
TspDTI	ATGAA	1 cut(s)	612
TspRI	CASTG	3 cut(s)	233, 810, 954
VpaK11BI	GGWCC	3 cut(s)	353, 745, 811
Zsp2I	ATGCAT	2 cut(s)	504, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.