RchiOBHm_Chr4g0445621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012271
Physical Location & Seq
Reverse (-)
66024456 .. 66028474
4019 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41321

Sequence Viewer

Length: 1164 bp
ATGTTTGACCAAAAGAAAATTTATATGATTTGTCAAAGAACAGAACCCAAAACAAAAGGCCCTGGGCCTTGGGCCCCCATTTGTACAAACAAAGCCCAGAAAGCCGTTATCAAGGTGGGAGTTCTGCTTTCGTCGAACACAGTGGCGCTTCCGTTCTCCGAAGTCGAGAAGTCGAGAAAAATGGCGGTGGCGGACGGCGGAAGAGAGATAGAAACAGAGCTGAGCAAGAAGAAGGAAATGACGCCATGGGAGCAGCACTCTGCCGTCATCAGCATCCCTCGCTTCGACTACAACGCCCCTTCGTCTCTTCTTCATCACTCCCACTCCGGCTTCCTCATCACCTGCCCCATCAAGCGGGAGAAAAGCGCCACTAAAGAAGCAATCTCCCTCTTTGCAAAGTATATTCAGTGCTGTAATAGTAGCGGTAGTGAAGAAAATTCGGCTTCTAAACGAAGGAAGCTTTCGGAGGAAAATGTGGATGGTCAGGATAGAGCGAATGATAATGATGTGGCAGGTGGTGATGTTGAAGAAGGTGCTTGCTCTCATGTGATGGTGGATACAGATGGAGAGACAGGTCCTCTTCTTAAGCTAGTTAAGCTGACAAAGAGTGGTTTGCTTCTCTTTATTTTCGGCAAAAATGTTTCTCCTGATGTCGTTGGGATTGTTTCAAAGATTGTAAAGTCTGTGGAATCCGGGAGCTCTGGTTCACTTCTTTGGTGTAATCGTATTTTCCCTATCCAAGCTACTTGTAGTTTGAATGAAAAGGAACTGCGTGAAGTTGTATCAAATCTTGTTCTTCAATTTATGAAAGATAATCAAAAACTTGTGCGGCCCATAAAGTTTGCAATTGGCTATAACAGAAGAGGATTAGAGACAGAATTGAACATTCCAACAGAAGCCCCAAATGCACTTGAGTTGTTGGACCGTAACAAATGCTTTGCTTTAGTGGCTTCTGCAGTTAAAGATGTTGTATCAGATTCAGTGGTGGATCTCAAAGCTCCAGAGCTCTCTGTTCTTATTGAGCTACTGCCCCTCTCTGGTATACCAAAAGGGTCTTTAGTGGTTGCTGTATCAGTTCTTCCTCAAAACGTTGTTAGTGCAAAGCCAAAACTATCCATCAAGGCACTGATTTCTGATACCAGGACAAAGGGTGAAAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

387

Amino Acids

42.1

Weight (kDa)

8.81

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09290
fragaria_vesca FvH4_4g35990
malus_domestica MD16G1010000.v1.1
prunus_persica Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1
pyrus_communis pycom16g00980
rosa_chinensis RchiOBHm_Chr4g0445621
rosa_laevigata RLG00000005724
rosa_multiflora Rmu_sc0019383.1_g000001
rosa_roxburghii Rroxscaffold_5G00386100
rosa_rugosa Rorug04G0363100 Rorug04G0363200
rosa_samantha Rh4AG424600 Rh4AG425000 Rh4BG436800 Rh4CG451300 Rh4DG433300
rosa_wichuraiana Rw4G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 350, 503
Acc36I ACCTGC 2 cut(s) 350, 503
AccI GTMKAC 1 cut(s) 1042
AciI CCGC 6 cut(s) 185, 191, 198, 355, 423, 829
AclI AACGTT 1 cut(s) 1089
AclWI GGATC 1 cut(s) 996
AcsI RAATTY 2 cut(s) 18, 436
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 354, 1037
AflII CTTAAG 1 cut(s) 584
AgsI TTSAA 5 cut(s) 527, 669, 757, 800, 883
AjnI CCWGG 2 cut(s) 61, 1139
AloI GAACNNNNNNTCC 2 cut(s) 688, 720
AluBI AGCT 9 cut(s) 220, 460, 589, 598, 699, 743, 998, 1006, 1024
AluI AGCT 9 cut(s) 220, 460, 589, 598, 699, 743, 998, 1006, 1024
Alw21I GWGCWC 2 cut(s) 701, 1008
Alw26I GTCTC 3 cut(s) 309, 563, 866
AlwI GGATC 1 cut(s) 996
AoxI GGCC 4 cut(s) 58, 65, 72, 830
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 18, 436
AspLEI GCGC 2 cut(s) 148, 368
AspS9I GGNCC 7 cut(s) 59, 65, 72, 73, 575, 831, 922
AsuC2I CCSGG 1 cut(s) 694
AsuHPI GGTGA 3 cut(s) 331, 530, 1163
AvaII GGWCC 2 cut(s) 575, 922
BaeGI GKGCMC 1 cut(s) 76
BanII GRGCYC 3 cut(s) 76, 701, 1008
BarI GAAGNNNNNNTAC 2 cut(s) 1062, 1094
Bbv12I GWGCWC 2 cut(s) 701, 1008
BbvI GCAGC 1 cut(s) 265
BccI CCATC 5 cut(s) 356, 473, 544, 557, 1124
BceAI ACGGC 3 cut(s) 89, 211, 248
BciT130I CCWGG 2 cut(s) 63, 1141
BciVI GTATCC 1 cut(s) 550
BcnI CCSGG 1 cut(s) 694
BcoDI GTCTC 3 cut(s) 309, 563, 866
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 2 cut(s) 149, 369
BfrI CTTAAG 1 cut(s) 584
BfuAI ACCTGC 2 cut(s) 350, 503
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 2 cut(s) 254, 830
BlpI GCTNAGC 1 cut(s) 221
BlsI GCNGC 2 cut(s) 255, 831
Bme1390I CCNGG 3 cut(s) 63, 694, 1141
Bme18I GGWCC 2 cut(s) 575, 922
BmgT120I GGNCC 7 cut(s) 59, 65, 72, 73, 575, 831, 922
BmiI GGNNCC 2 cut(s) 74, 75
BmrFI CCNGG 3 cut(s) 63, 694, 1141
BmsI GCATC 1 cut(s) 282
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 984
Bpu1102I GCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 932
BpuMI CCSGG 1 cut(s) 694
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 61, 62, 68, 245
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 688, 718
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 1037
BseBI CCWGG 2 cut(s) 63, 1141
BseDI CCNNGG 4 cut(s) 61, 62, 68, 245
BseGI GGATG 2 cut(s) 273, 484
BseLI CCNNNNNNNGG 2 cut(s) 354, 1037
BseMII CTCAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 4 cut(s) 60, 67, 74, 832
BsiHKAI GWGCWC 2 cut(s) 701, 1008
BsiSI CCGG 2 cut(s) 327, 693
BslI CCNNNNNNNGG 2 cut(s) 354, 1037
BsmAI GTCTC 3 cut(s) 309, 563, 866
BsmBI CGTCTC 1 cut(s) 309
BsnI GGCC 4 cut(s) 60, 67, 74, 832
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 76, 701, 1008
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 1 cut(s) 988
Bsp1720I GCTNAGC 1 cut(s) 221
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 6 cut(s) 185, 191, 198, 355, 423, 829
BspANI GGCC 4 cut(s) 60, 67, 74, 832
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 74, 75
BspMAI CTGCAG 1 cut(s) 958
BspMI ACCTGC 2 cut(s) 350, 503
BspPI GGATC 1 cut(s) 996
BspTI CTTAAG 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 83
BssECI CCNNGG 4 cut(s) 61, 62, 68, 245
BssMI GATC 1 cut(s) 988
BssNAI GTATAC 1 cut(s) 1043
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 2 cut(s) 68, 245
Bst1107I GTATAC 1 cut(s) 1043
Bst2UI CCWGG 2 cut(s) 63, 1141
Bst4CI ACNGT 2 cut(s) 142, 926
Bst6I CTCTTC 4 cut(s) 196, 312, 585, 856
BstACI GRCGYC 1 cut(s) 242
BstAFI CTTAAG 1 cut(s) 584
BstAUI TGTACA 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 1 cut(s) 221
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 273, 484
BstH2I RGCGCY 2 cut(s) 149, 369
BstHHI GCGC 2 cut(s) 148, 368
BstKTI GATC 1 cut(s) 991
BstMAI GTCTC 3 cut(s) 309, 563, 866
BstMBI GATC 1 cut(s) 988
BstMWI GCNNNNNNNGC 6 cut(s) 101, 250, 279, 595, 905, 947
BstNI CCWGG 2 cut(s) 63, 1141
BstSCI CCNGG 3 cut(s) 61, 692, 1139
BstSFI CTRYAG 1 cut(s) 954
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 988
BstYI RGATCY 1 cut(s) 988
BstZ17I GTATAC 1 cut(s) 1043
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 4 cut(s) 60, 67, 74, 832
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 273, 484
BtsIMutI CAGTG 4 cut(s) 147, 413, 987, 1124
BveI ACCTGC 2 cut(s) 350, 503
Cac8I GCNNGC 1 cut(s) 538
CfoI GCGC 2 cut(s) 148, 368
Cfr13I GGNCC 7 cut(s) 59, 65, 72, 73, 575, 831, 922
CseI GACGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 84
CviAII CATG 2 cut(s) 246, 545
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 990
DpnII GATC 1 cut(s) 988
Eam1104I CTCTTC 4 cut(s) 196, 312, 585, 856
EarI CTCTTC 4 cut(s) 196, 312, 585, 856
EciI GGCGGA 2 cut(s) 206, 213
Ecl136II GAGCTC 2 cut(s) 699, 1006
Eco130I CCWWGG 2 cut(s) 68, 245
Eco24I GRGCYC 3 cut(s) 76, 701, 1008
Eco47I GGWCC 2 cut(s) 575, 922
Eco53kI GAGCTC 2 cut(s) 699, 1006
EcoICRI GAGCTC 2 cut(s) 699, 1006
EcoO109I RGGNCCY 3 cut(s) 59, 73, 575
EcoRII CCWGG 2 cut(s) 61, 1139
EcoT14I CCWWGG 2 cut(s) 68, 245
EcoT38I GRGCYC 3 cut(s) 76, 701, 1008
ErhI CCWWGG 2 cut(s) 68, 245
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 2 cut(s) 249, 548
FaiI YATR 9 cut(s) 24, 26, 247, 402, 546, 806, 836, 855, 1043
FatI CATG 2 cut(s) 245, 544
FauI CCCGC 1 cut(s) 348
FblI GTMKAC 1 cut(s) 1042
Fnu4HI GCNGC 2 cut(s) 254, 830
FokI GGATG 2 cut(s) 260, 491
FriOI GRGCYC 3 cut(s) 76, 701, 1008
Fsp4HI GCNGC 2 cut(s) 254, 830
FspBI CTAG 1 cut(s) 590
GlaI GCGC 2 cut(s) 147, 367
GluI GCNGC 2 cut(s) 254, 830
GsuI CTGGAG 1 cut(s) 984
HaeII RGCGCY 2 cut(s) 149, 369
HaeIII GGCC 4 cut(s) 60, 67, 74, 832
HapII CCGG 2 cut(s) 327, 693
HgaI GACGC 1 cut(s) 250
HhaI GCGC 2 cut(s) 148, 368
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 2 cut(s) 249, 548
Hin6I GCGC 2 cut(s) 146, 366
HinP1I GCGC 2 cut(s) 146, 366
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 689, 977
HpaII CCGG 2 cut(s) 327, 693
HphI GGTGA 3 cut(s) 331, 530, 1163
Hpy166II GTNNAC 2 cut(s) 707, 1043
Hpy188I TCNGA 4 cut(s) 160, 466, 976, 1135
Hpy188III TCNNGA 5 cut(s) 166, 174, 485, 647, 1001
Hpy8I GTNNAC 2 cut(s) 707, 1043
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 4 cut(s) 226, 309, 447, 524
HpyCH4III ACNGT 2 cut(s) 142, 926
HpyCH4IV ACGT 1 cut(s) 1089
HpyCH4V TGCA 5 cut(s) 395, 845, 908, 956, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 101, 250, 279, 595, 905, 947
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 1089
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 249, 548
HspAI GCGC 2 cut(s) 146, 366
Kzo9I GATC 1 cut(s) 988
LmnI GCTCC 3 cut(s) 250, 696, 1003
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 590
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 1 cut(s) 926
MalI GATC 1 cut(s) 990
MboI GATC 1 cut(s) 988
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 3 cut(s) 76, 701, 1008
MluCI AATT 5 cut(s) 18, 436, 800, 846, 878
MmeI TCCRAC 2 cut(s) 900, 914
MnlI CCTC 8 cut(s) 288, 344, 398, 460, 588, 857, 1043, 1092
MseI TTAA 3 cut(s) 585, 594, 960
MspCI CTTAAG 1 cut(s) 584
MspI CCGG 2 cut(s) 327, 693
MspR9I CCNGG 3 cut(s) 63, 694, 1141
MunI CAATTG 1 cut(s) 846
MvaI CCWGG 2 cut(s) 63, 1141
MwoI GCNNNNNNNGC 6 cut(s) 101, 250, 279, 595, 905, 947
NciI CCSGG 1 cut(s) 694
NcoI CCATGG 1 cut(s) 245
NdeII GATC 1 cut(s) 988
NlaIII CATG 2 cut(s) 249, 548
NlaIV GGNNCC 2 cut(s) 74, 75
PaqCI CACCTGC 2 cut(s) 350, 503
PasI CCCWGGG 1 cut(s) 62
PfeI GAWTC 2 cut(s) 689, 977
PfoI TCCNGGA 1 cut(s) 692
PkrI GCNGC 2 cut(s) 255, 831
PpuMI RGGWCCY 1 cut(s) 575
Psp124BI GAGCTC 2 cut(s) 701, 1008
Psp1406I AACGTT 1 cut(s) 1089
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 2 cut(s) 61, 1139
PspGI CCWGG 2 cut(s) 61, 1139
PspN4I GGNNCC 2 cut(s) 74, 75
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 7 cut(s) 59, 65, 72, 73, 575, 831, 922
PspPPI RGGWCCY 1 cut(s) 575
PstI CTGCAG 1 cut(s) 958
PsuI RGATCY 1 cut(s) 988
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
SacI GAGCTC 2 cut(s) 701, 1008
SaqAI TTAA 3 cut(s) 585, 594, 960
SatI GCNGC 2 cut(s) 254, 830
Sau3AI GATC 1 cut(s) 988
Sau96I GGNCC 7 cut(s) 59, 65, 72, 73, 575, 831, 922
ScrFI CCNGG 3 cut(s) 63, 694, 1141
SduI GDGCHC 3 cut(s) 76, 701, 1008
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 1 cut(s) 954
SinI GGWCC 2 cut(s) 575, 922
SmlI CTYRAG 2 cut(s) 584, 911
SmoI CTYRAG 2 cut(s) 584, 911
Sse9I AATT 5 cut(s) 18, 436, 800, 846, 878
SsiI CCGC 6 cut(s) 185, 191, 198, 355, 423, 829
SspMI CTAG 1 cut(s) 590
SstI GAGCTC 2 cut(s) 701, 1008
StyD4I CCNGG 3 cut(s) 61, 692, 1139
StyI CCWWGG 2 cut(s) 68, 245
TaaI ACNGT 2 cut(s) 142, 926
TaiI ACGT 1 cut(s) 1092
TaqI TCGA 4 cut(s) 134, 165, 173, 285
TasI AATT 5 cut(s) 18, 436, 800, 846, 878
TatI WGTACW 1 cut(s) 83
TauI GCSGC 1 cut(s) 832
TfiI GAWTC 2 cut(s) 689, 977
Tru1I TTAA 3 cut(s) 585, 594, 960
Tru9I TTAA 3 cut(s) 585, 594, 960
TscAI CASTG 4 cut(s) 147, 413, 987, 1131
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 302, 774, 821
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 4 cut(s) 147, 413, 987, 1131
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 2 cut(s) 575, 922
XapI RAATTY 2 cut(s) 18, 436
XmiI GTMKAC 1 cut(s) 1042
XspI CTAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.