FvH4_4g35990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012271
Physical Location & Seq
Reverse (-)
33094327 .. 33097482
3156 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35990.t1

Sequence Viewer

Length: 966 bp
ATGGCGGTGGCGGGCGGCGAGAGTGAGCTGAGCGAGAAGAAGGAGATGACGCCATGGGAGCAGCACTCCGCCGTCATCAGCATCCCTCGCTTCGACTACAACGCTCCTTCTTCTCTTCTTCACCACTCCCACTCCGGCTTCCTCATCACCTGCCCCATCAAGCGCGAGAAAAGCGCCACTAAAGAAGCAATCTCCCTCTTCGCAAAGTATATTCAGTGCGGTAATAGTACTGAAGAAAATTTGGTTTCTAAAAGAAGGAAGATTTCGGAGGAAAATGTGGATGGTGATTGCGTTAATGGTAGTGAAGGTGGTGATGTGGAAGAAGGTGCTTGCTCTACTGTGAAGGTGGATACAGATGGAGAGCGAGGTCCTCTTCTTAAGCTGGTTAAGCTGACAAAGAGCGGTTTGCTGCTTTTCATTTTCGGCAAAAGTGTTTCTCCTGATGTGGTTGGGATTGTTTCGAGGATTGTTCAGTCTGTGGAATCCGGGAGCTCTGGTTCACTCCTTTGGTGTAATCGTATTTTCCCTATCCAAGCTACTTGCAGTTTGAATGAAAAGGAACTGCGTGAAGTTGTGTCAAAGCTTGTTCTTCAATTTGTGAAAGATAATCAAAAACTTGTGCGGCCCATAAAGTTTGCAATTGGGTATAACAGAAGAGGAATAGAGACAGAATTGAACACTCCAAAAGAAACCCCCAATGCACTTGAGTTGTTGGACCGTAACAAATGCTTTGCCTTGGTAGCTTCTGCAGTGAAAGATGTTGTATCAGATTCAGTGGTGGACCTCAAGACTCCAGAGCTCTCTGTTCTTATTGAGCTACTACCTCTTTCTGGTGTACCCAAAGGGTCTTTAGTGGTTGCTGTATCAGTTCTTCCCCGAAACGTTGTTAGTGCAAAGCCAAAACTATCCATCAAGGCACTGGTTTCCGATACCAAGACAAAGGGTGAAAAGGCAAGAAACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

322

Amino Acids

34.81

Weight (kDa)

8.37

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09290
fragaria_vesca FvH4_4g35990
malus_domestica MD16G1010000.v1.1
prunus_persica Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1
pyrus_communis pycom16g00980
rosa_chinensis RchiOBHm_Chr4g0445621
rosa_laevigata RLG00000005724
rosa_multiflora Rmu_sc0019383.1_g000001
rosa_roxburghii Rroxscaffold_5G00386100
rosa_rugosa Rorug04G0363100 Rorug04G0363200
rosa_samantha Rh4AG424600 Rh4AG425000 Rh4BG436800 Rh4CG451300 Rh4DG433300
rosa_wichuraiana Rw4G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 402
AccII CGCG 1 cut(s) 165
AciI CCGC 7 cut(s) 5, 11, 15, 69, 219, 402, 622
AclI AACGTT 1 cut(s) 882
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 2 cut(s) 229, 837
AfiI CCNNNNNNNGG 1 cut(s) 830
AflII CTTAAG 1 cut(s) 377
AgsI TTSAA 3 cut(s) 550, 593, 676
AloI GAACNNNNNNTCC 2 cut(s) 481, 513
AluBI AGCT 9 cut(s) 28, 382, 391, 492, 536, 583, 743, 799, 817
AluI AGCT 9 cut(s) 28, 382, 391, 492, 536, 583, 743, 799, 817
Alw21I GWGCWC 2 cut(s) 494, 801
Alw26I GTCTC 1 cut(s) 659
AoxI GGCC 1 cut(s) 623
ApeKI GCWGC 2 cut(s) 61, 409
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 2 cut(s) 165, 176
AspS9I GGNCC 4 cut(s) 368, 624, 715, 781
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 5 cut(s) 113, 139, 296, 323, 956
AvaII GGWCC 3 cut(s) 368, 715, 781
BanII GRGCYC 2 cut(s) 494, 801
BarI GAAGNNNNNNTAC 2 cut(s) 855, 887
Bbv12I GWGCWC 2 cut(s) 494, 801
BbvI GCAGC 2 cut(s) 73, 396
BccI CCATC 4 cut(s) 164, 275, 350, 917
BceAI ACGGC 1 cut(s) 56
BciVI GTATCC 1 cut(s) 343
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 659
BfmI CTRYAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 158
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 4 cut(s) 16, 62, 410, 623
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 4 cut(s) 17, 63, 411, 624
BmcAI AGTACT 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 3 cut(s) 368, 715, 781
BmgT120I GGNCC 4 cut(s) 368, 624, 715, 781
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 90
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 777
Bpu1102I GCTNAGC 1 cut(s) 29
BpuEI CTTGAG 2 cut(s) 725, 770
BpuMI CCSGG 1 cut(s) 487
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 53, 735
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 481, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 830
Bse1I ACTGG 1 cut(s) 924
BseDI CCNNGG 2 cut(s) 53, 735
BseGI GGATG 2 cut(s) 81, 286
BseLI CCNNNNNNNGG 1 cut(s) 830
BseMII CTCAG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 924
BseXI GCAGC 2 cut(s) 73, 396
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 625
BsiHKAI GWGCWC 2 cut(s) 494, 801
BsiSI CCGG 2 cut(s) 135, 486
BslI CCNNNNNNNGG 1 cut(s) 830
BsmAI GTCTC 1 cut(s) 659
BsnI GGCC 1 cut(s) 625
Bsp1286I GDGCHC 2 cut(s) 494, 801
Bsp1720I GCTNAGC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 7 cut(s) 5, 11, 15, 69, 219, 402, 622
BspANI GGCC 1 cut(s) 625
BspCNI CTCAG 1 cut(s) 21
BspFNI CGCG 1 cut(s) 165
BspMAI CTGCAG 1 cut(s) 751
BspMI ACCTGC 1 cut(s) 158
BspTI CTTAAG 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 402
BsrI ACTGG 1 cut(s) 924
BssECI CCNNGG 2 cut(s) 53, 735
BssNI GRCGYC 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 53, 735
Bst4CI ACNGT 2 cut(s) 340, 719
Bst6I CTCTTC 4 cut(s) 120, 203, 378, 649
BstACI GRCGYC 1 cut(s) 50
BstAFI CTTAAG 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 13, 331
BstDEI CTNAG 1 cut(s) 29
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 81, 286
BstFNI CGCG 1 cut(s) 165
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 2 cut(s) 165, 176
BstMAI GTCTC 1 cut(s) 659
BstMWI GCNNNNNNNGC 5 cut(s) 58, 87, 171, 388, 740
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 73, 396
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 625
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 81, 286
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 4 cut(s) 221, 756, 780, 917
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 13, 331
CfoI GCGC 2 cut(s) 165, 176
Cfr13I GGNCC 4 cut(s) 368, 624, 715, 781
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 228, 836
CviAII CATG 1 cut(s) 54
CviQI GTAC 2 cut(s) 228, 836
DdeI CTNAG 1 cut(s) 29
Eam1104I CTCTTC 4 cut(s) 120, 203, 378, 649
EarI CTCTTC 4 cut(s) 120, 203, 378, 649
EciI GGCGGA 1 cut(s) 58
Ecl136II GAGCTC 2 cut(s) 492, 799
Eco130I CCWWGG 2 cut(s) 53, 735
Eco24I GRGCYC 2 cut(s) 494, 801
Eco47I GGWCC 3 cut(s) 368, 715, 781
Eco53kI GAGCTC 2 cut(s) 492, 799
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 2 cut(s) 492, 799
EcoO109I RGGNCCY 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 53, 735
EcoT38I GRGCYC 2 cut(s) 494, 801
ErhI CCWWGG 2 cut(s) 53, 735
FaeI CATG 1 cut(s) 57
FaiI YATR 4 cut(s) 55, 210, 629, 648
FatI CATG 1 cut(s) 53
FauI CCCGC 1 cut(s) 4
Fnu4HI GCNGC 4 cut(s) 16, 62, 410, 623
FokI GGATG 2 cut(s) 68, 293
FriOI GRGCYC 2 cut(s) 494, 801
Fsp4HI GCNGC 4 cut(s) 16, 62, 410, 623
GlaI GCGC 2 cut(s) 164, 175
GluI GCNGC 4 cut(s) 16, 62, 410, 623
GsuI CTGGAG 1 cut(s) 777
HaeII RGCGCY 1 cut(s) 177
HaeIII GGCC 1 cut(s) 625
HapII CCGG 2 cut(s) 135, 486
HgaI GACGC 1 cut(s) 58
HhaI GCGC 2 cut(s) 165, 176
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 2 cut(s) 163, 174
HinP1I GCGC 2 cut(s) 163, 174
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 3 cut(s) 482, 770, 790
HpaII CCGG 2 cut(s) 135, 486
HphI GGTGA 5 cut(s) 113, 139, 296, 323, 956
Hpy166II GTNNAC 3 cut(s) 500, 781, 836
Hpy188I TCNGA 3 cut(s) 268, 769, 928
Hpy188III TCNNGA 3 cut(s) 440, 787, 794
Hpy8I GTNNAC 3 cut(s) 500, 781, 836
HpyAV CCTTC 6 cut(s) 34, 117, 249, 299, 317, 337
HpyCH4III ACNGT 2 cut(s) 340, 719
HpyCH4IV ACGT 1 cut(s) 882
HpyCH4V TGCA 5 cut(s) 543, 638, 701, 749, 893
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 87, 171, 388, 740
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 1 cut(s) 882
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 2 cut(s) 163, 174
LmnI GCTCC 3 cut(s) 58, 109, 489
LpnPI CCDG 9 cut(s) 148, 163, 368, 453, 480, 499, 807, 816, 905
Lsp1109I GCAGC 2 cut(s) 73, 396
LweI GCATC 1 cut(s) 90
MaeII ACGT 1 cut(s) 882
MaeIII GTNAC 1 cut(s) 719
MbiI CCGCTC 1 cut(s) 402
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 494, 801
MluCI AATT 4 cut(s) 238, 593, 639, 671
MlyI GAGTC 1 cut(s) 784
MmeI TCCRAC 1 cut(s) 693
MseI TTAA 4 cut(s) 294, 378, 387, 964
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 2 cut(s) 135, 486
MspR9I CCNGG 1 cut(s) 487
MunI CAATTG 1 cut(s) 639
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 5 cut(s) 58, 87, 171, 388, 740
NciI CCSGG 1 cut(s) 487
NcoI CCATGG 1 cut(s) 53
NlaIII CATG 1 cut(s) 57
PaqCI CACCTGC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 482, 770
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 4 cut(s) 17, 63, 411, 624
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 368
Psp124BI GAGCTC 2 cut(s) 494, 801
Psp1406I AACGTT 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 368
PspPI GGNCC 4 cut(s) 368, 624, 715, 781
PspPPI RGGWCCY 1 cut(s) 368
PstI CTGCAG 1 cut(s) 751
RsaI GTAC 2 cut(s) 229, 837
RsaNI GTAC 2 cut(s) 228, 836
SacI GAGCTC 2 cut(s) 494, 801
SaqAI TTAA 4 cut(s) 294, 378, 387, 964
SatI GCNGC 4 cut(s) 16, 62, 410, 623
Sau96I GGNCC 4 cut(s) 368, 624, 715, 781
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 2 cut(s) 494, 801
SfaNI GCATC 1 cut(s) 90
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 3 cut(s) 368, 715, 781
SmlI CTYRAG 3 cut(s) 377, 704, 785
SmoI CTYRAG 3 cut(s) 377, 704, 785
Sse9I AATT 4 cut(s) 238, 593, 639, 671
SsiI CCGC 7 cut(s) 5, 11, 15, 69, 219, 402, 622
SstI GAGCTC 2 cut(s) 494, 801
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 2 cut(s) 53, 735
TaaI ACNGT 2 cut(s) 340, 719
TaiI ACGT 1 cut(s) 885
TaqI TCGA 2 cut(s) 93, 461
TasI AATT 4 cut(s) 238, 593, 639, 671
TatI WGTACW 1 cut(s) 227
TauI GCSGC 2 cut(s) 18, 625
TfiI GAWTC 2 cut(s) 482, 770
Tru1I TTAA 4 cut(s) 294, 378, 387, 964
Tru9I TTAA 4 cut(s) 294, 378, 387, 964
TscAI CASTG 4 cut(s) 221, 756, 780, 924
TseI GCWGC 2 cut(s) 61, 409
TspDTI ATGAA 2 cut(s) 406, 567
TspRI CASTG 4 cut(s) 221, 756, 780, 924
Vha464I CTTAAG 1 cut(s) 377
VpaK11BI GGWCC 3 cut(s) 368, 715, 781
XapI RAATTY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
ZrmI AGTACT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.