Rorug04G0363100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012271
Physical Location & Seq
Reverse (-)
53545595 .. 53546704
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0363100.1

Sequence Viewer

Length: 744 bp
ATGGTTTTCCGGTTTGGAGATAGTGAGTTCAAAATCACAGCTGCTGATGTAGAGGTTATATTTGGGATTCCAAACAAAGGAGAAGAGATAGATATGGCAGCGAGACAGTCAAAGGGTGACACAGAAATGATCAAAAAGCACTTCAACAAATGCGATCGTTGTGTAAGAAAAAGCGACATAGATGTTGCATTAGAAAAAGATCTTCCTAAACGATCCAAACATAATGCAGATGATGTGGCAAGGTTGCTGATCTTGAGCCTTTTGGCCTCGTTCTTAGTATGCGCATCAGGACACACACTTGCATGGAACCTTGGGAATGTTGTTTGTTCAGATTTGAAAAGAGTTGAAGAATATTGGGTGTGCGACAAGACTGAAATAATGCCACCAATCCCCAACAGAGAAGAGTACAAGCCAACATTTGCAAAGTGGGGGCTTCCGAAGCTACATGCTTCAATGTTGGAAATCACTGACGAGTATTTTGAGAGCTTGTTTGACAAGAGCAAAAACAGTGAAGAAGAGAATGAAATGGAAGTGGGCGATGAAGAAGTGAGGGAGGAGACGGATGAAGAAGAGGATGACATAGTAAGGGAGGAGATAGCTGAAGAAGAAGAGGATGAAATAGCAAGCATACCAACATTTGGTGAATGGATGCCTCCTAGCAGCCAGGAGATGAAAGATAAACTGGAGAAAAGCAATGAAAACATGAAGGAAGTGTTGGACAGCCTTGACAAAGCTTTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

247

Amino Acids

28.38

Weight (kDa)

4.52

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09290
fragaria_vesca FvH4_4g35990
malus_domestica MD16G1010000.v1.1
prunus_persica Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1
pyrus_communis pycom16g00980
rosa_chinensis RchiOBHm_Chr4g0445621
rosa_laevigata RLG00000005724
rosa_multiflora Rmu_sc0019383.1_g000001
rosa_roxburghii Rroxscaffold_5G00386100
rosa_rugosa Rorug04G0363100 Rorug04G0363200
rosa_samantha Rh4AG424600 Rh4AG425000 Rh4BG436800 Rh4CG451300 Rh4DG433300
rosa_wichuraiana Rw4G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 283
AccB7I CCANNNNNTGG 1 cut(s) 638
AclWI GGATC 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 77, 638
AgsI TTSAA 5 cut(s) 31, 145, 337, 347, 453
AjnI CCWGG 1 cut(s) 663
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AluBI AGCT 5 cut(s) 41, 442, 486, 599, 734
AluI AGCT 5 cut(s) 41, 442, 486, 599, 734
Alw26I GTCTC 2 cut(s) 97, 551
AlwI GGATC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 3 cut(s) 41, 98, 660
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspLEI GCGC 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 128, 653
BbvI GCAGC 3 cut(s) 28, 110, 672
BciT130I CCWGG 1 cut(s) 665
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 97, 551
BfaI CTAG 1 cut(s) 657
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 42, 99, 661
BlsI GCNGC 3 cut(s) 43, 100, 662
Bme1390I CCNGG 1 cut(s) 665
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 665
BmsI GCATC 2 cut(s) 293, 639
BpmI CTGGAG 1 cut(s) 704
BpuEI CTTGAG 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 638
Bse1I ACTGG 1 cut(s) 687
Bse3DI GCAATG 1 cut(s) 700
BseBI CCWGG 1 cut(s) 665
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 4 cut(s) 568, 580, 619, 654
BseLI CCNNNNNNNGG 2 cut(s) 77, 638
BseMI GCAATG 1 cut(s) 700
BseNI ACTGG 1 cut(s) 687
BseRI GAGGAG 2 cut(s) 569, 605
BseXI GCAGC 3 cut(s) 28, 110, 672
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 10
BslI CCNNNNNNNGG 2 cut(s) 77, 638
BsmAI GTCTC 2 cut(s) 97, 551
BsmBI CGTCTC 1 cut(s) 551
BsnI GGCC 1 cut(s) 266
Bsp143I GATC 5 cut(s) 129, 154, 199, 212, 249
BspANI GGCC 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 308
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 700
BsrI ACTGG 1 cut(s) 687
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 5 cut(s) 129, 154, 199, 212, 249
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 108, 509
Bst6I CTCTTC 5 cut(s) 78, 396, 510, 564, 603
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 1 cut(s) 274
BstF5I GGATG 4 cut(s) 568, 580, 619, 654
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 5 cut(s) 132, 157, 202, 215, 252
BstMAI GTCTC 2 cut(s) 97, 551
BstMBI GATC 5 cut(s) 129, 154, 199, 212, 249
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 1 cut(s) 665
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 663
BstV1I GCAGC 3 cut(s) 28, 110, 672
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 266
BtgZI GCGATG 1 cut(s) 552
BtsCI GGATG 4 cut(s) 568, 580, 619, 654
BtsIMutI CAGTG 2 cut(s) 465, 514
Cac8I GCNNGC 1 cut(s) 625
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 406
CviAII CATG 3 cut(s) 303, 446, 703
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 274
DpnI GATC 5 cut(s) 131, 156, 201, 214, 251
DpnII GATC 5 cut(s) 129, 154, 199, 212, 249
DraI TTTAAA 1 cut(s) 738
Eam1104I CTCTTC 5 cut(s) 78, 396, 510, 564, 603
EarI CTCTTC 5 cut(s) 78, 396, 510, 564, 603
Eco130I CCWWGG 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 3 cut(s) 306, 449, 706
FatI CATG 3 cut(s) 302, 445, 702
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 42, 99, 661
FokI GGATG 4 cut(s) 575, 587, 626, 661
Fsp4HI GCNGC 3 cut(s) 42, 99, 661
FspAI RTGCGCAY 1 cut(s) 283
FspBI CTAG 1 cut(s) 657
FspI TGCGCA 1 cut(s) 283
GlaI GCGC 1 cut(s) 283
GluI GCNGC 3 cut(s) 42, 99, 661
GsuI CTGGAG 1 cut(s) 704
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 10
HhaI GCGC 1 cut(s) 284
Hin1II CATG 3 cut(s) 306, 449, 706
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 732
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 128, 653
Hpy188I TCNGA 2 cut(s) 331, 438
Hpy188III TCNNGA 2 cut(s) 253, 288
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 2 cut(s) 108, 509
HpyCH4V TGCA 4 cut(s) 188, 227, 302, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 1 cut(s) 274
Hsp92II CATG 3 cut(s) 306, 449, 706
HspAI GCGC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 5 cut(s) 129, 154, 199, 212, 249
LpnPI CCDG 5 cut(s) 23, 273, 650, 668, 677
Lsp1109I GCAGC 3 cut(s) 28, 110, 672
LweI GCATC 2 cut(s) 293, 639
MaeI CTAG 1 cut(s) 657
MaeIII GTNAC 1 cut(s) 116
MalI GATC 5 cut(s) 131, 156, 201, 214, 251
MboI GATC 5 cut(s) 129, 154, 199, 212, 249
MflI RGATCY 1 cut(s) 199
MmeI TCCRAC 2 cut(s) 438, 696
MnlI CCTC 8 cut(s) 46, 277, 543, 547, 565, 583, 604, 663
MseI TTAA 1 cut(s) 737
MslI CAYNNNNRTG 2 cut(s) 125, 301
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 665
MvaI CCWGG 1 cut(s) 665
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeII GATC 5 cut(s) 129, 154, 199, 212, 249
NlaIII CATG 3 cut(s) 306, 449, 706
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 116
NsbI TGCGCA 1 cut(s) 283
NspI RCATGY 1 cut(s) 449
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 638
PkrI GCNGC 3 cut(s) 43, 100, 662
Ple19I CGATCG 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 663
PspGI CCWGG 1 cut(s) 663
PspN4I GGNNCC 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 199
PvuI CGATCG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 2 cut(s) 125, 301
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 3 cut(s) 42, 99, 661
Sau3AI GATC 5 cut(s) 129, 154, 199, 212, 249
ScrFI CCNGG 1 cut(s) 665
SetI ASST 8 cut(s) 43, 57, 245, 312, 444, 488, 601, 736
SfaNI GCATC 2 cut(s) 293, 639
SmiMI CAYNNNNRTG 2 cut(s) 125, 301
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SspI AATATT 1 cut(s) 353
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 1 cut(s) 663
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 108, 509
TatI WGTACW 1 cut(s) 405
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TscAI CASTG 2 cut(s) 472, 514
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 3 cut(s) 41, 98, 660
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 7 cut(s) 537, 555, 579, 630, 686, 711, 719
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 472, 514
Van91I CCANNNNNTGG 1 cut(s) 638
XceI RCATGY 1 cut(s) 449
XspI CTAG 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.