Rmu_sc0019383.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019383.1
OG0012271
Physical Location & Seq
Reverse (-)
3122 .. 5515
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019383.1_g000001.1.cds

Sequence Viewer

Length: 708 bp
atggcggtggcggacggcggaagagagatagaaacagagctgagcaagaagaaggaaatgacgccatgggagcagcactctgccgtcatcagcatccctcgcttcgactacaacgccccttcgtctcttcttcatcactcccactccggcttcctcatcacctgccccatcaagcgggagaaaagcgccactaaagaagcaatctccctctttggaaagtatattcagtgctgtaatagtagcggtagtgaagaaaattcggcttctaaaagaaggaagctttcggaggaaaatgtggagaatgataatgatggtggtgatgttgaagaaggtgcttgctctcatgtgatggtggatacagatggagagacaggtcctcttcttaagctagttaagctgacaaagagtggtttgcttctctttattttcggcaaaaatgtttctcctgatgtcgttgggattgtttcaaagattgtacagtctgtggaatccaggagctctgttaaagatgttgtatcggattcagtggtggacctcaaagctccagagctctctgttcttattgagctactgcccctctctggtataccaaaagggtctttagtggttgctgtatcagttcttcctcaaaacgttgttagtgcaaagccaaaactatccatcaaggcactgatttctgataccaggacaaagggtgaaaaggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

235

Amino Acids

25.2

Weight (kDa)

6.24

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09290
fragaria_vesca FvH4_4g35990
malus_domestica MD16G1010000.v1.1
prunus_persica Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1
pyrus_communis pycom16g00980
rosa_chinensis RchiOBHm_Chr4g0445621
rosa_laevigata RLG00000005724
rosa_multiflora Rmu_sc0019383.1_g000001
rosa_roxburghii Rroxscaffold_5G00386100
rosa_rugosa Rorug04G0363100 Rorug04G0363200
rosa_samantha Rh4AG424600 Rh4AG425000 Rh4BG436800 Rh4CG451300 Rh4DG433300
rosa_wichuraiana Rw4G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 586
AciI CCGC 5 cut(s) 5, 11, 18, 175, 243
AclI AACGTT 1 cut(s) 633
AcsI RAATTY 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 2 cut(s) 174, 581
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 2 cut(s) 326, 468
AjnI CCWGG 2 cut(s) 491, 683
AluBI AGCT 8 cut(s) 40, 280, 388, 397, 498, 542, 550, 568
AluI AGCT 8 cut(s) 40, 280, 388, 397, 498, 542, 550, 568
Alw21I GWGCWC 2 cut(s) 500, 552
Alw26I GTCTC 2 cut(s) 129, 362
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 374, 532
AsuHPI GGTGA 3 cut(s) 151, 329, 707
AvaII GGWCC 2 cut(s) 374, 532
BanII GRGCYC 2 cut(s) 500, 552
BarI GAAGNNNNNNTAC 2 cut(s) 606, 638
Bbv12I GWGCWC 2 cut(s) 500, 552
BbvI GCAGC 1 cut(s) 85
BccI CCATC 5 cut(s) 176, 305, 343, 356, 668
BceAI ACGGC 2 cut(s) 31, 68
BciT130I CCWGG 2 cut(s) 493, 685
BciVI GTATCC 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 129, 362
BfaI CTAG 1 cut(s) 389
BfoI RGCGCY 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 1 cut(s) 74
BlpI GCTNAGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 2 cut(s) 493, 685
Bme18I GGWCC 2 cut(s) 374, 532
BmgT120I GGNCC 2 cut(s) 374, 532
BmrFI CCNGG 2 cut(s) 493, 685
BmsI GCATC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 528
Bpu1102I GCTNAGC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 581
BseBI CCWGG 2 cut(s) 493, 685
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 174, 581
BseMII CTCAG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 500, 552
BsiSI CCGG 1 cut(s) 147
BslI CCNNNNNNNGG 2 cut(s) 174, 581
BsmAI GTCTC 2 cut(s) 129, 362
BsmBI CGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 500, 552
Bsp1407I TGTACA 1 cut(s) 475
Bsp1720I GCTNAGC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 5 cut(s) 5, 11, 18, 175, 243
BspCNI CTCAG 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 170
BspTI CTTAAG 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 65
BssNAI GTATAC 1 cut(s) 587
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 65
Bst1107I GTATAC 1 cut(s) 587
Bst2UI CCWGG 2 cut(s) 493, 685
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 3 cut(s) 16, 132, 384
BstACI GRCGYC 1 cut(s) 62
BstAFI CTTAAG 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstMAI GTCTC 2 cut(s) 129, 362
BstMWI GCNNNNNNNGC 3 cut(s) 70, 99, 394
BstNI CCWGG 2 cut(s) 493, 685
BstSCI CCNGG 2 cut(s) 491, 683
BstV1I GCAGC 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 587
BsuI GTATCC 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 233, 531, 668
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 337
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 374, 532
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 476
CviAII CATG 2 cut(s) 66, 344
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 1 cut(s) 41
Eam1104I CTCTTC 3 cut(s) 16, 132, 384
EarI CTCTTC 3 cut(s) 16, 132, 384
EciI GGCGGA 2 cut(s) 26, 33
Ecl136II GAGCTC 2 cut(s) 498, 550
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 2 cut(s) 500, 552
Eco47I GGWCC 2 cut(s) 374, 532
Eco53kI GAGCTC 2 cut(s) 498, 550
EcoICRI GAGCTC 2 cut(s) 498, 550
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 491, 683
EcoT14I CCWWGG 1 cut(s) 65
EcoT38I GRGCYC 2 cut(s) 500, 552
ErhI CCWWGG 1 cut(s) 65
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 2 cut(s) 69, 347
FaiI YATR 4 cut(s) 67, 222, 345, 587
FatI CATG 2 cut(s) 65, 343
FauI CCCGC 1 cut(s) 168
FblI GTMKAC 1 cut(s) 586
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 2 cut(s) 500, 552
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 1 cut(s) 389
GlaI GCGC 1 cut(s) 187
GluI GCNGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 528
HaeII RGCGCY 1 cut(s) 189
HapII CCGG 1 cut(s) 147
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 2 cut(s) 69, 347
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 488, 521
HpaII CCGG 1 cut(s) 147
HphI GGTGA 3 cut(s) 151, 329, 707
Hpy166II GTNNAC 2 cut(s) 532, 587
Hpy188I TCNGA 3 cut(s) 286, 520, 679
Hpy188III TCNNGA 2 cut(s) 446, 545
Hpy8I GTNNAC 2 cut(s) 532, 587
HpyAV CCTTC 4 cut(s) 46, 129, 267, 323
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 1 cut(s) 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 99, 394
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 633
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 69, 347
HspAI GCGC 1 cut(s) 186
LmnI GCTCC 3 cut(s) 70, 495, 547
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 633
MboII GAAGA 8 cut(s) 33, 61, 119, 122, 263, 338, 371, 614
MhlI GDGCHC 2 cut(s) 500, 552
MluCI AATT 1 cut(s) 256
MnlI CCTC 8 cut(s) 108, 164, 218, 280, 387, 545, 587, 636
MseI TTAA 3 cut(s) 384, 393, 504
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 493, 685
MvaI CCWGG 2 cut(s) 493, 685
MwoI GCNNNNNNNGC 3 cut(s) 70, 99, 394
NcoI CCATGG 1 cut(s) 65
NlaIII CATG 2 cut(s) 69, 347
PaqCI CACCTGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 488, 521
PfoI TCCNGGA 1 cut(s) 491
PkrI GCNGC 1 cut(s) 75
PpuMI RGGWCCY 1 cut(s) 374
Psp124BI GAGCTC 2 cut(s) 500, 552
Psp1406I AACGTT 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 491, 683
PspGI CCWGG 2 cut(s) 491, 683
PspPI GGNCC 2 cut(s) 374, 532
PspPPI RGGWCCY 1 cut(s) 374
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SacI GAGCTC 2 cut(s) 500, 552
SaqAI TTAA 3 cut(s) 384, 393, 504
SatI GCNGC 1 cut(s) 74
Sau96I GGNCC 2 cut(s) 374, 532
ScrFI CCNGG 2 cut(s) 493, 685
SduI GDGCHC 2 cut(s) 500, 552
SfaNI GCATC 1 cut(s) 102
SinI GGWCC 2 cut(s) 374, 532
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 1 cut(s) 256
SsiI CCGC 5 cut(s) 5, 11, 18, 175, 243
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 2 cut(s) 500, 552
StyD4I CCNGG 2 cut(s) 491, 683
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 1 cut(s) 636
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 2 cut(s) 488, 521
Tru1I TTAA 3 cut(s) 384, 393, 504
Tru9I TTAA 3 cut(s) 384, 393, 504
TscAI CASTG 3 cut(s) 233, 531, 675
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 122
TspRI CASTG 3 cut(s) 233, 531, 675
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 374, 532
XapI RAATTY 1 cut(s) 256
XmiI GTMKAC 1 cut(s) 586
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.