pycom16g00980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012271
Physical Location & Seq
Forward (+)
589242 .. 591129
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g00980.6

Sequence Viewer

Length: 1044 bp
ATGGCAACACCGGTGGCGGTGGCGGCGGCGGAAGTAGAAAGAGAGAAGATGGAGTCGAGTAAGAAAGAGGAGATGGCGCCATGGGAGCAACACTCGACTGTAATCAGCATACCTCGCTTCGACTACAACGCCCCTTCTTCTCTTCTCCAACGCTCCCACTCCGGCTTCCTCATTACCTGCCCCATCAAGAGGGAGAAAAGCGCCACAAAAGAAGCAATTTCCCTCCTTGCAAAGTATGTTCAGTGCTTTAATAGTTGCAGCTCAGAAGACAATACCAGTTCGAAAAGAAGGAAGCTTTCGAAAGAGGATATTGATGGCGAGTGCTGCAATGGCAGTGGGGAAACCAAGGATGCTGCTACTGCTAACTCTGAGGACGCTCATGATGATCTTCAGGAGCGTACTCCTCGTTTGTCTCCTGCAAAGGTGGATGCGGAAGGAGATGCAAATCCCCTTCTTTCGCTGGTTAAGTTGACAAAGAGTGGTCTGCTTCTCTTTACTTTTCGCAGAAACACTTCTCCTGACGTTGTAGATACTGTATCGAAAATTATTCAGGCTGTGGAATCCAAGAGTGTTGGTTCACCCCTTTGGTGTAATCGCATTTTCCCTATCCAAGCTACTTGTAGTTTGAAAGAGAAGGAACTGCATGAAGTTGTATCAAGGCTTGTTCTTCAATTCGTGAACGATAATCAGAAGCTTGTGCGGCCCATAAAGTTTGCAATTGCATATAATAGAAGAGGGATAGAGACAGAACTGAATATTCCCAAAGAATCTTCAAATGCAATTGATATGCTGGACCGTGACAAATGCTTTGCCGCAGTGGCTACTGCTGTCAAGGGTGTTGTATCAGATTCAGTGGTGGACCTCAAATCTCCGGAACTCTGCGTTCTTCTTGAGCTACTACCCCTTTCTGGTGTACCCAAAGAGTCGTTAGTGGTTGCTGTATCAGTTCTTCCTCGACACATTGTTAATGCGAAGCCGAAACTAAGCATCAAGGCACTGGTTTCCGATACAAAATTGAAGGGGAAAAGCAATAAGAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
THUMP

Protein Analysis

348

Amino Acids

38.03

Weight (kDa)

8.46

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09290
fragaria_vesca FvH4_4g35990
malus_domestica MD16G1010000.v1.1
prunus_persica Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1 Prupe.1G340600_v2.0.a1
pyrus_communis pycom16g00980
rosa_chinensis RchiOBHm_Chr4g0445621
rosa_laevigata RLG00000005724
rosa_multiflora Rmu_sc0019383.1_g000001
rosa_roxburghii Rroxscaffold_5G00386100
rosa_rugosa Rorug04G0363100 Rorug04G0363200
rosa_samantha Rh4AG424600 Rh4AG425000 Rh4BG436800 Rh4CG451300 Rh4DG433300
rosa_wichuraiana Rw4G036400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccB1I GGYRCC 1 cut(s) 76
AccIII TCCGGA 1 cut(s) 871
AciI CCGC 7 cut(s) 17, 23, 26, 29, 431, 700, 813
AcuI CTGAAG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 2 cut(s) 400, 915
AfiI CCNNNNNNNGG 2 cut(s) 189, 908
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 4 cut(s) 628, 671, 774, 1018
AluBI AGCT 5 cut(s) 261, 295, 614, 694, 895
AluI AGCT 5 cut(s) 261, 295, 614, 694, 895
Alw26I GTCTC 2 cut(s) 417, 737
Aor13HI TCCGGA 1 cut(s) 871
AoxI GGCC 1 cut(s) 701
ApeKI GCWGC 3 cut(s) 258, 324, 353
ArsI GACNNNNNNTTYG 2 cut(s) 791, 823
AsiGI ACCGGT 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 511
AspLEI GCGC 2 cut(s) 79, 203
AspS9I GGNCC 3 cut(s) 702, 793, 859
AsuHPI GGTGA 1 cut(s) 570
AsuII TTCGAA 2 cut(s) 281, 299
AvaII GGWCC 2 cut(s) 793, 859
BanI GGYRCC 1 cut(s) 76
BarI GAAGNNNNNNTAC 2 cut(s) 933, 965
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 270, 311, 340
BccI CCATC 4 cut(s) 43, 67, 191, 308
BcoDI GTCTC 2 cut(s) 417, 737
BfoI RGCGCY 2 cut(s) 80, 204
BfuAI ACCTGC 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 818
BisI GCNGC 7 cut(s) 24, 27, 259, 325, 354, 701, 813
BlsI GCNGC 7 cut(s) 25, 28, 260, 326, 355, 702, 814
Bme18I GGWCC 2 cut(s) 793, 859
BmgT120I GGNCC 3 cut(s) 702, 793, 859
BmiI GGNNCC 1 cut(s) 78
BmsI GCATC 4 cut(s) 340, 418, 430, 996
BpiI GAAGAC 1 cut(s) 273
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu14I TTCGAA 2 cut(s) 281, 299
BpuEI CTTGAG 1 cut(s) 911
BsaBI GATNNNNATC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 80, 345
BsaWI WCCGGW 2 cut(s) 10, 871
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 908
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 276, 1002
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 444
BseAI TCCGGA 1 cut(s) 871
BseDI CCNNGG 2 cut(s) 80, 345
BseGI GGATG 2 cut(s) 355, 433
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 189, 908
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 276, 360
BseNI ACTGG 2 cut(s) 276, 1002
BseRI GAGGAG 2 cut(s) 83, 393
BseXI GCAGC 3 cut(s) 270, 311, 340
BshFI GGCC 1 cut(s) 703
BshNI GGYRCC 1 cut(s) 76
BshTI ACCGGT 1 cut(s) 10
BsiSI CCGG 3 cut(s) 11, 162, 872
BslI CCNNNNNNNGG 2 cut(s) 189, 908
BsmAI GTCTC 2 cut(s) 417, 737
BsnI GGCC 1 cut(s) 703
Bsp119I TTCGAA 2 cut(s) 281, 299
Bsp13I TCCGGA 1 cut(s) 871
Bsp143I GATC 1 cut(s) 385
Bsp19I CCATGG 1 cut(s) 80
BspACI CCGC 7 cut(s) 17, 23, 26, 29, 431, 700, 813
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 2 cut(s) 275, 361
BspEI TCCGGA 1 cut(s) 871
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 185
BspT104I TTCGAA 2 cut(s) 281, 299
BspT107I GGYRCC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 2 cut(s) 276, 1002
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 80, 345
BssMI GATC 1 cut(s) 385
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 80, 345
Bst4CI ACNGT 3 cut(s) 100, 535, 797
Bst6I CTCTTC 2 cut(s) 147, 727
BstACI GRCGYC 1 cut(s) 77
BstBI TTCGAA 2 cut(s) 281, 299
BstDEI CTNAG 3 cut(s) 262, 369, 983
BstDSI CCRYGG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 355, 433
BstH2I RGCGCY 2 cut(s) 80, 204
BstHHI GCGC 2 cut(s) 79, 203
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 2 cut(s) 417, 737
BstMBI GATC 1 cut(s) 385
BstMWI GCNNNNNNNGC 8 cut(s) 23, 85, 114, 324, 330, 359, 700, 818
BstV1I GCAGC 3 cut(s) 270, 311, 340
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 703
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 2 cut(s) 355, 433
BtsI GCAGTG 2 cut(s) 340, 822
BtsIMutI CAGTG 5 cut(s) 248, 340, 822, 858, 995
BveI ACCTGC 1 cut(s) 185
CciI TCATGA 1 cut(s) 379
CfoI GCGC 2 cut(s) 79, 203
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 702, 793, 859
CseI GACGC 1 cut(s) 383
Csp6I GTAC 2 cut(s) 399, 914
CspAI ACCGGT 1 cut(s) 10
CspCI CAANNNNNGTGG 3 cut(s) 29, 316, 351
CviAII CATG 3 cut(s) 81, 380, 644
CviQI GTAC 2 cut(s) 399, 914
DdeI CTNAG 3 cut(s) 262, 369, 983
DinI GGCGCC 1 cut(s) 78
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 147, 727
EarI CTCTTC 2 cut(s) 147, 727
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 80, 345
Eco47I GGWCC 2 cut(s) 793, 859
Eco57I CTGAAG 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 80, 345
EgeI GGCGCC 1 cut(s) 78
EheI GGCGCC 1 cut(s) 78
ErhI CCWWGG 2 cut(s) 80, 345
FaeI CATG 3 cut(s) 84, 383, 647
FaiI YATR 9 cut(s) 82, 110, 237, 381, 645, 707, 724, 726, 788
FatI CATG 3 cut(s) 80, 379, 643
Fnu4HI GCNGC 7 cut(s) 24, 27, 259, 325, 354, 701, 813
FokI GGATG 2 cut(s) 362, 440
Fsp4HI GCNGC 7 cut(s) 24, 27, 259, 325, 354, 701, 813
GlaI GCGC 2 cut(s) 78, 202
GluI GCNGC 7 cut(s) 24, 27, 259, 325, 354, 701, 813
HaeII RGCGCY 2 cut(s) 80, 204
HaeIII GGCC 1 cut(s) 703
HapII CCGG 3 cut(s) 11, 162, 872
HgaI GACGC 1 cut(s) 383
HhaI GCGC 2 cut(s) 79, 203
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 3 cut(s) 84, 383, 647
Hin6I GCGC 2 cut(s) 77, 201
HinP1I GCGC 2 cut(s) 77, 201
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 2 cut(s) 293, 692
HinfI GANTC 5 cut(s) 53, 560, 767, 848, 923
HpaII CCGG 3 cut(s) 11, 162, 872
HphI GGTGA 1 cut(s) 570
Hpy166II GTNNAC 5 cut(s) 471, 578, 679, 859, 914
Hpy188I TCNGA 5 cut(s) 265, 370, 690, 847, 1006
Hpy188III TCNNGA 7 cut(s) 187, 380, 392, 518, 676, 872, 890
Hpy8I GTNNAC 5 cut(s) 471, 578, 679, 859, 914
HpyAV CCTTC 7 cut(s) 144, 282, 428, 461, 628, 1012, 1030
HpyCH4III ACNGT 3 cut(s) 100, 535, 797
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 9 cut(s) 230, 258, 327, 419, 443, 643, 716, 722, 779
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 85, 114, 324, 330, 359, 700, 818
HpyF3I CTNAG 3 cut(s) 262, 369, 983
HpySE526I ACGT 1 cut(s) 522
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 3 cut(s) 84, 383, 647
HspAI GCGC 2 cut(s) 77, 201
KasI GGCGCC 1 cut(s) 76
Kpn2I TCCGGA 1 cut(s) 871
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 3 cut(s) 85, 158, 394
Lsp1109I GCAGC 3 cut(s) 270, 311, 340
LweI GCATC 4 cut(s) 340, 418, 430, 996
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 1 cut(s) 797
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MfeI CAATTG 2 cut(s) 717, 780
MluCI AATT 6 cut(s) 216, 543, 671, 717, 780, 1013
Mly113I GGCGCC 1 cut(s) 77
MlyI GAGTC 2 cut(s) 62, 932
MmeI TCCRAC 1 cut(s) 172
MroI TCCGGA 1 cut(s) 871
MroXI GAANNNNTTC 1 cut(s) 511
MseI TTAA 4 cut(s) 249, 465, 966, 1042
MspI CCGG 3 cut(s) 11, 162, 872
MunI CAATTG 2 cut(s) 717, 780
MwoI GCNNNNNNNGC 8 cut(s) 23, 85, 114, 324, 330, 359, 700, 818
NarI GGCGCC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 80
NdeII GATC 1 cut(s) 385
NlaIII CATG 3 cut(s) 84, 383, 647
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 797
NspV TTCGAA 2 cut(s) 281, 299
PagI TCATGA 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 511
PfeI GAWTC 3 cut(s) 560, 767, 848
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 7 cut(s) 25, 28, 260, 326, 355, 702, 814
PleI GAGTC 2 cut(s) 61, 931
PluTI GGCGCC 1 cut(s) 80
PpsI GAGTC 2 cut(s) 61, 931
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 3 cut(s) 702, 793, 859
RsaI GTAC 2 cut(s) 400, 915
RsaNI GTAC 2 cut(s) 399, 914
SaqAI TTAA 4 cut(s) 249, 465, 966, 1042
SatI GCNGC 7 cut(s) 24, 27, 259, 325, 354, 701, 813
Sau3AI GATC 1 cut(s) 385
Sau96I GGNCC 3 cut(s) 702, 793, 859
SchI GAGTC 2 cut(s) 62, 932
SfaNI GCATC 4 cut(s) 340, 418, 430, 996
SfoI GGCGCC 1 cut(s) 78
SfuI TTCGAA 2 cut(s) 281, 299
SgrAI CRCCGGYG 1 cut(s) 10
SinI GGWCC 2 cut(s) 793, 859
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 6 cut(s) 216, 543, 671, 717, 780, 1013
SsiI CCGC 7 cut(s) 17, 23, 26, 29, 431, 700, 813
SspDI GGCGCC 1 cut(s) 76
SspI AATATT 1 cut(s) 757
StyI CCWWGG 2 cut(s) 80, 345
TaaI ACNGT 3 cut(s) 100, 535, 797
TaiI ACGT 1 cut(s) 525
TaqI TCGA 7 cut(s) 56, 95, 120, 281, 299, 539, 955
TasI AATT 6 cut(s) 216, 543, 671, 717, 780, 1013
TauI GCSGC 4 cut(s) 26, 29, 703, 815
TfiI GAWTC 3 cut(s) 560, 767, 848
Tru1I TTAA 4 cut(s) 249, 465, 966, 1042
Tru9I TTAA 4 cut(s) 249, 465, 966, 1042
TscAI CASTG 5 cut(s) 248, 340, 822, 858, 1002
TseFI GTSAC 1 cut(s) 797
TseI GCWGC 3 cut(s) 258, 324, 353
Tsp45I GTSAC 1 cut(s) 797
TspDTI ATGAA 1 cut(s) 660
TspRI CASTG 5 cut(s) 248, 340, 822, 858, 1002
VpaK11BI GGWCC 2 cut(s) 793, 859
XmnI GAANNNNTTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.