AT1G09300

Aminopeptidase P, N-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3003495 .. 3008381
4887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09300.2

Sequence Viewer

Length: 1482 bp
ATGCAGTTTCTTGCGCGGAATCTAGTTCGGAGAGTATCGAGAACTCAGGTCGTTAGTCGAAATGCATATTCAACCCAAACGGTCAGAGACATTGGTCAGCCAACTCCAGCATCTCATCCTCATTTAATGGCAGAAGGAGAGGTCACACCAGGAATAAGAATTGAGGAATACATTGGTAGAAGGAAGAAACTTGTGGAGCTTCTCCCTGAGAATAGTTTAGCCATCATTTCGTCAGCCCCCGTGAAGATGATGACTGACGTTGTTCCATATACGTTCAGACAAGATGCTGATTATTTGTATCTAACTGGCTGCCAGCAACCAGGTGGTGTGGCTGTTTTAAGTGATGAACGCGGTTTATGCATGTTCATGCCGGAATCAACTCCTAAGGATATTGCTTGGGAAGGAGAAGTTGCTGGAGTTGATGCAGCGTCCGAGGTCTTCAAGGCAGATCAAGCATATCCGATAAGCAAATTACCCGAGATTCTTTCAGACATGATAAGACATTCTTCAAAAGTGTTTCATAATGTTCAATCGGCCTCGCAAAGATACACAAACTTGGATGACTTTCAAAATTCAGCATCTCTTGGCAAAGTGAAAACTCTTTCAAGTTTAACACATGAGCTGAGGTTAATTAAATCACCTGCAGAACTCAAATTGATGAGAGAGTCTGCATCAATTGCGTGCCAGGGTCTTCTGAAAACAATGTTACATTCAAAGGGGTTTCCTGATGAAGGCATCTTATCAGCCCAGGTTGAATATGAGTGCCGGGTAAGAGGTGCTCAGCGAATGGCGTTCAATCCTGTAGTCGGTGGTGGTTCAAATGCCAGTGTTATTCACTATTCACGAAATGATCAGCGTATTAAAGATGGTGATCTTGTCTTGATGGACATGGGTTGTGAGTTACATGGTTATGTTAGTGATCTTACTCGGACATGGCCACCTTGCGGAAAATTCAGTTCTGTTCAGGAAGAGCTATATGATCTTATACTTCAGACAAACAAAGAATGCATAAAACAATGCAAGCCTGGTACAACCATCCGCCAACTAAACACATATTCGACCGAGTTGTTGTGTGATGGACTGATGAAGATGGGCATCCTGAAAAGTCGTAGACTGTATCACCAGCTGAATCCGACCTCCATAGGCCACTACCTTGGGATGGATGTGCATGATTCTTCTGCTGTGGGATATGACCGTCCTTTGCAACCTGGTTTTGTGATTACGATTGAGCCAGGAGTCTATATTCCATCTTCATTTGACTGCCCTGAAAGATTCCAAGGGATTGGGATAAGGATCGAGGATGACGTACTGATCACTGAGACGGGCTACGAAGTGCTCACAGGGTCAATGCCTAAGGAGATCAAACACATAGAGACATTGTTGAATAATCACTGCCATGATAACTCTGCGCGAACTTCGCCAGTTTCTCTTTGCAAGGTTAAAGGCTTGCATACGAACCGTAACCCAAGAAGATTGTTTTGA

Protein Analysis

493

Amino Acids

54.98

Weight (kDa)

6.94

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_N PF05195 26 - 141 3.1e-33 Aminopeptidase P, N-terminal domain
Peptidase_M24 PF00557 188 - 409 1.4e-51 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 649
AccI GTMKAC 1 cut(s) 1111
AccII CGCG 3 cut(s) 16, 351, 1411
AciI CCGC 4 cut(s) 16, 351, 945, 1039
AclWI GGATC 1 cut(s) 1301
AcoI YGGCCR 1 cut(s) 935
AcsI RAATTY 2 cut(s) 571, 950
AcuI CTGAAG 1 cut(s) 974
AfaI GTAC 2 cut(s) 1030, 1308
AfiI CCNNNNNNNGG 4 cut(s) 731, 806, 944, 1159
AjnI CCWGG 7 cut(s) 148, 319, 684, 747, 1024, 1207, 1231
AluBI AGCT 4 cut(s) 199, 622, 973, 1126
AluI AGCT 4 cut(s) 199, 622, 973, 1126
Alw21I GWGCWC 2 cut(s) 781, 1338
Alw26I GTCTC 3 cut(s) 81, 1313, 1367
AlwI GGATC 1 cut(s) 1301
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 3 cut(s) 534, 935, 1144
ApeKI GCWGC 2 cut(s) 309, 425
ApoI RAATTY 2 cut(s) 571, 950
AspLEI GCGC 2 cut(s) 16, 1411
AsuC2I CCSGG 1 cut(s) 767
AsuHPI GGTGA 3 cut(s) 630, 881, 1112
AvaI CYCGRG 1 cut(s) 476
AxyI CCTNAGG 2 cut(s) 384, 1353
BalI TGGCCA 1 cut(s) 937
BbsI GAAGAC 2 cut(s) 430, 683
Bbv12I GWGCWC 2 cut(s) 781, 1338
BbvCI CCTCAGC 1 cut(s) 623
BbvI GCAGC 2 cut(s) 296, 437
BccI CCATC 8 cut(s) 230, 860, 877, 1043, 1070, 1084, 1153, 1255
BciT130I CCWGG 7 cut(s) 150, 321, 686, 749, 1026, 1209, 1233
BclI TGATCA 2 cut(s) 850, 1311
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 3 cut(s) 81, 1313, 1367
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 2 cut(s) 642, 801
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 2 cut(s) 310, 426
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 2 cut(s) 311, 427
Bme1390I CCNGG 8 cut(s) 150, 321, 686, 749, 767, 1026, 1209, 1233
BmeT110I CYCGRG 1 cut(s) 476
BmrFI CCNGG 8 cut(s) 150, 321, 686, 749, 767, 1026, 1209, 1233
BmsI GCATC 7 cut(s) 119, 274, 412, 587, 680, 744, 1104
BoxI GACNNNNGTC 1 cut(s) 93
BpiI GAAGAC 2 cut(s) 430, 683
BpmI CTGGAG 2 cut(s) 90, 435
Bpu10I CCTNAGC 1 cut(s) 623
Bpu1102I GCTNAGC 1 cut(s) 780
BpuMI CCSGG 1 cut(s) 767
BsaBI GATNNNNATC 3 cut(s) 870, 1094, 1292
BsaJI CCNNGG 5 cut(s) 432, 685, 747, 1153, 1276
Bsc4I CCNNNNNNNGG 4 cut(s) 731, 806, 944, 1159
Bse1I ACTGG 3 cut(s) 310, 825, 1421
Bse21I CCTNAGG 2 cut(s) 384, 1353
Bse8I GATNNNNATC 3 cut(s) 870, 1094, 1292
BseBI CCWGG 7 cut(s) 150, 321, 686, 749, 1026, 1209, 1233
BseDI CCNNGG 5 cut(s) 432, 685, 747, 1153, 1276
BseGI GGATG 7 cut(s) 115, 565, 1035, 1095, 1164, 1168, 1306
BseJI GATNNNNATC 3 cut(s) 870, 1094, 1292
BseLI CCNNNNNNNGG 4 cut(s) 731, 806, 944, 1159
BseMII CTCAG 5 cut(s) 59, 198, 614, 794, 1308
BseNI ACTGG 3 cut(s) 310, 825, 1421
BseXI GCAGC 2 cut(s) 296, 437
Bsh1236I CGCG 3 cut(s) 16, 351, 1411
Bsh1285I CGRYCG 1 cut(s) 1062
BshFI GGCC 3 cut(s) 536, 937, 1146
BsiEI CGRYCG 1 cut(s) 1062
BsiHKAI GWGCWC 2 cut(s) 781, 1338
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 2 cut(s) 371, 766
BslI CCNNNNNNNGG 4 cut(s) 731, 806, 944, 1159
BsmAI GTCTC 3 cut(s) 81, 1313, 1367
BsmBI CGTCTC 1 cut(s) 1313
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 3 cut(s) 536, 937, 1146
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 781, 1338
Bsp143I GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 4 cut(s) 16, 351, 945, 1039
BspANI GGCC 3 cut(s) 536, 937, 1146
BspCNI CTCAG 5 cut(s) 58, 199, 615, 793, 1309
BspFNI CGCG 3 cut(s) 16, 351, 1411
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 1 cut(s) 1301
BspQI GCTCTTC 1 cut(s) 963
BsrI ACTGG 3 cut(s) 310, 825, 1421
BssECI CCNNGG 5 cut(s) 432, 685, 747, 1153, 1276
BssMI GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
BssT1I CCWWGG 2 cut(s) 1153, 1276
Bst2UI CCWGG 7 cut(s) 150, 321, 686, 749, 1026, 1209, 1233
Bst4CI ACNGT 4 cut(s) 82, 1116, 1196, 1460
Bst6I CTCTTC 1 cut(s) 963
BstAPI GCANNNNNTGC 1 cut(s) 677
BstC8I GCNNGC 4 cut(s) 314, 682, 1022, 1448
BstDEI CTNAG 7 cut(s) 45, 207, 384, 623, 780, 1317, 1353
BstENI CCTNNNNNAGG 1 cut(s) 729
BstF5I GGATG 7 cut(s) 115, 565, 1035, 1095, 1164, 1168, 1306
BstFNI CGCG 3 cut(s) 16, 351, 1411
BstHHI GCGC 2 cut(s) 16, 1411
BstKTI GATC 8 cut(s) 451, 853, 874, 922, 982, 1296, 1314, 1362
BstMAI GTCTC 3 cut(s) 81, 1313, 1367
BstMBI GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
BstMCI CGRYCG 1 cut(s) 1062
BstMWI GCNNNNNNNGC 4 cut(s) 357, 452, 677, 1417
BstNI CCWGG 7 cut(s) 150, 321, 686, 749, 1026, 1209, 1233
BstNSI RCATGY 1 cut(s) 364
BstPAI GACNNNNGTC 1 cut(s) 93
BstSCI CCNGG 8 cut(s) 148, 319, 684, 747, 765, 1024, 1207, 1231
BstSFI CTRYAG 2 cut(s) 642, 801
BstUI CGCG 3 cut(s) 16, 351, 1411
BstV1I GCAGC 2 cut(s) 296, 437
BstV2I GAAGAC 2 cut(s) 430, 683
BstXI CCANNNNNNTGG 2 cut(s) 1154, 1283
Bsu36I CCTNAGG 2 cut(s) 384, 1353
BsuRI GGCC 3 cut(s) 536, 937, 1146
BtsCI GGATG 7 cut(s) 115, 565, 1035, 1095, 1164, 1168, 1306
BtsI GCAGTG 1 cut(s) 1390
BtsIMutI CAGTG 3 cut(s) 832, 1314, 1390
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 4 cut(s) 314, 682, 1022, 1448
CfoI GCGC 2 cut(s) 16, 1411
CseI GACGC 1 cut(s) 417
CsiI ACCWGGT 2 cut(s) 319, 1207
Csp6I GTAC 2 cut(s) 1029, 1307
CviAII CATG 9 cut(s) 361, 367, 493, 617, 889, 905, 933, 1169, 1397
CviQI GTAC 2 cut(s) 1029, 1307
DdeI CTNAG 7 cut(s) 45, 207, 384, 623, 780, 1317, 1353
DpnI GATC 8 cut(s) 450, 852, 873, 921, 981, 1295, 1313, 1361
DpnII GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
EaeI YGGCCR 1 cut(s) 935
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
EciI GGCGGA 1 cut(s) 1028
Eco130I CCWWGG 2 cut(s) 1153, 1276
Eco57I CTGAAG 1 cut(s) 974
Eco81I CCTNAGG 2 cut(s) 384, 1353
Eco88I CYCGRG 1 cut(s) 476
EcoNI CCTNNNNNAGG 1 cut(s) 729
EcoRII CCWGG 7 cut(s) 148, 319, 684, 747, 1024, 1207, 1231
EcoT14I CCWWGG 2 cut(s) 1153, 1276
EcoT22I ATGCAT 3 cut(s) 67, 362, 1010
ErhI CCWWGG 2 cut(s) 1153, 1276
Esp3I CGTCTC 1 cut(s) 1313
FaeI CATG 9 cut(s) 364, 370, 496, 620, 892, 908, 936, 1172, 1400
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FatI CATG 9 cut(s) 360, 366, 492, 616, 888, 904, 932, 1168, 1396
FbaI TGATCA 2 cut(s) 850, 1311
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 2 cut(s) 310, 426
FokI GGATG 7 cut(s) 102, 572, 1022, 1082, 1171, 1175, 1313
Fsp4HI GCNGC 2 cut(s) 310, 426
FspBI CTAG 1 cut(s) 23
GlaI GCGC 2 cut(s) 15, 1410
GluI GCNGC 2 cut(s) 310, 426
GsuI CTGGAG 2 cut(s) 90, 435
HaeIII GGCC 3 cut(s) 536, 937, 1146
HapII CCGG 2 cut(s) 371, 766
HgaI GACGC 1 cut(s) 417
HhaI GCGC 2 cut(s) 16, 1411
Hin1II CATG 9 cut(s) 364, 370, 496, 620, 892, 908, 936, 1172, 1400
Hin6I GCGC 2 cut(s) 14, 1409
HinP1I GCGC 2 cut(s) 14, 1409
HinfI GANTC 8 cut(s) 19, 374, 481, 665, 1129, 1172, 1236, 1272
HpaII CCGG 2 cut(s) 371, 766
HphI GGTGA 3 cut(s) 630, 881, 1112
Hpy166II GTNNAC 1 cut(s) 1112
Hpy188III TCNNGA 6 cut(s) 39, 725, 843, 880, 965, 1099
Hpy8I GTNNAC 1 cut(s) 1112
HpyAV CCTTC 4 cut(s) 128, 174, 395, 725
HpyCH4III ACNGT 4 cut(s) 82, 1116, 1196, 1460
HpyCH4IV ACGT 3 cut(s) 258, 272, 1305
HpyF10VI GCNNNNNNNGC 4 cut(s) 357, 452, 677, 1417
HpyF3I CTNAG 7 cut(s) 45, 207, 384, 623, 780, 1317, 1353
HpySE526I ACGT 3 cut(s) 258, 272, 1305
Hsp92II CATG 9 cut(s) 364, 370, 496, 620, 892, 908, 936, 1172, 1400
HspAI GCGC 2 cut(s) 14, 1409
Ksp22I TGATCA 2 cut(s) 850, 1311
Kzo9I GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 296, 437
LweI GCATC 7 cut(s) 119, 274, 412, 587, 680, 744, 1104
MabI ACCWGGT 2 cut(s) 319, 1207
MaeI CTAG 1 cut(s) 23
MaeII ACGT 3 cut(s) 258, 272, 1305
MaeIII GTNAC 4 cut(s) 142, 705, 900, 1460
MalI GATC 8 cut(s) 450, 852, 873, 921, 981, 1295, 1313, 1361
MboI GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
MfeI CAATTG 1 cut(s) 675
MhlI GDGCHC 2 cut(s) 781, 1338
MlsI TGGCCA 1 cut(s) 937
MluCI AATT 7 cut(s) 159, 470, 571, 630, 653, 675, 950
MluNI TGGCCA 1 cut(s) 937
MlyI GAGTC 2 cut(s) 674, 1245
MmeI TCCRAC 1 cut(s) 1157
MnlI CCTC 9 cut(s) 129, 133, 157, 427, 547, 618, 767, 1147, 1291
Mox20I TGGCCA 1 cut(s) 937
Mph1103I ATGCAT 3 cut(s) 67, 362, 1010
MscI TGGCCA 1 cut(s) 937
MseI TTAA 7 cut(s) 125, 338, 611, 629, 633, 861, 1440
MslI CAYNNNNRTG 3 cut(s) 365, 909, 1395
Msp20I TGGCCA 1 cut(s) 937
MspA1I CMGCKG 1 cut(s) 1126
MspI CCGG 2 cut(s) 371, 766
MspR9I CCNGG 8 cut(s) 150, 321, 686, 749, 767, 1026, 1209, 1233
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 1 cut(s) 1010
MvaI CCWGG 7 cut(s) 150, 321, 686, 749, 1026, 1209, 1233
MvnI CGCG 3 cut(s) 16, 351, 1411
MwoI GCNNNNNNNGC 4 cut(s) 357, 452, 677, 1417
NciI CCSGG 1 cut(s) 767
NdeII GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
NlaIII CATG 9 cut(s) 364, 370, 496, 620, 892, 908, 936, 1172, 1400
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 3 cut(s) 67, 362, 1010
NspI RCATGY 1 cut(s) 364
PacI TTAATTAA 1 cut(s) 633
PaqCI CACCTGC 1 cut(s) 649
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 1302
PctI GAATGC 1 cut(s) 1010
PfeI GAWTC 6 cut(s) 19, 374, 481, 1129, 1172, 1272
PkrI GCNGC 2 cut(s) 311, 427
PleI GAGTC 2 cut(s) 673, 1244
PpsI GAGTC 2 cut(s) 673, 1244
PshAI GACNNNNGTC 1 cut(s) 93
Psp6I CCWGG 7 cut(s) 148, 319, 684, 747, 1024, 1207, 1231
PspGI CCWGG 7 cut(s) 148, 319, 684, 747, 1024, 1207, 1231
PstI CTGCAG 1 cut(s) 646
PvuII CAGCTG 1 cut(s) 1126
RsaI GTAC 2 cut(s) 1030, 1308
RsaNI GTAC 2 cut(s) 1029, 1307
RseI CAYNNNNRTG 3 cut(s) 365, 909, 1395
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 7 cut(s) 125, 338, 611, 629, 633, 861, 1440
SatI GCNGC 2 cut(s) 310, 426
Sau3AI GATC 8 cut(s) 448, 850, 871, 919, 979, 1293, 1311, 1359
SchI GAGTC 2 cut(s) 674, 1245
ScrFI CCNGG 8 cut(s) 150, 321, 686, 749, 767, 1026, 1209, 1233
SduI GDGCHC 2 cut(s) 781, 1338
SexAI ACCWGGT 2 cut(s) 319, 1207
SfaNI GCATC 7 cut(s) 119, 274, 412, 587, 680, 744, 1104
SfcI CTRYAG 2 cut(s) 642, 801
SmiMI CAYNNNNRTG 3 cut(s) 365, 909, 1395
Sse9I AATT 7 cut(s) 159, 470, 571, 630, 653, 675, 950
SsiI CCGC 4 cut(s) 16, 351, 945, 1039
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 8 cut(s) 148, 319, 684, 747, 765, 1024, 1207, 1231
StyI CCWWGG 2 cut(s) 1153, 1276
TaaI ACNGT 4 cut(s) 82, 1116, 1196, 1460
TaiI ACGT 3 cut(s) 261, 275, 1308
TaqI TCGA 4 cut(s) 38, 58, 1058, 1296
TaqII GACCGA 1 cut(s) 1076
TasI AATT 7 cut(s) 159, 470, 571, 630, 653, 675, 950
TfiI GAWTC 6 cut(s) 19, 374, 481, 1129, 1172, 1272
Tru1I TTAA 7 cut(s) 125, 338, 611, 629, 633, 861, 1440
Tru9I TTAA 7 cut(s) 125, 338, 611, 629, 633, 861, 1440
TscAI CASTG 3 cut(s) 832, 1321, 1397
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 309, 425
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 6 cut(s) 355, 360, 509, 744, 1100, 1242
TspRI CASTG 3 cut(s) 832, 1321, 1397
XagI CCTNNNNNAGG 1 cut(s) 729
XapI RAATTY 2 cut(s) 571, 950
XceI RCATGY 1 cut(s) 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 1111
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 3 cut(s) 67, 362, 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.