Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006224

Physical Location & Seq

Genomic Coordinates Reverse (-)

21057840 .. 21058581

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCTGTTACAAAAGGTTCGGTCTATATTTCAGGAAGAGCTCTATGATCTTATTCTGCAAACAAACAAGACATGTGTGGAGCTTTGCAAACCCGGTGCTAGCATTCGAGAAATACACAACTTTTCAGTTGAAATGCTTCACCAGGGACTCAAGGAGATTGGAATTCTGAAAGATTCTAGAAGCAGTTCCTACCATCAGCTGAATCCAACTTCCATAGGTTTCTCCCTTCATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003014 GO:0003094 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0030145 GO:0031647 GO:0032501 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050821 GO:0051604 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0071704 GO:0097205 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

79

Amino Acids

8.92

Weight (kDa)

6.89

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09300 AT1G09300
fragaria_vesca	FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800
malus_domestica	MD04G1191800.v1.1
prunus_persica	Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1
pyrus_communis	pycom12g19110 pycom12g19120
rosa_chinensis	RchiOBHm_Chr3g0457511
rosa_laevigata	RLG00000025217
rosa_multiflora	Rmu_sc0007404.1_g000015 Rmu_sc0038466.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421810
rosa_rugosa	Rorug03G0020600 Rorug03G0020900
rosa_samantha	Rh3AG081400 Rh3BG083500 Rh3CG083700 Rh3DG085100
rosa_wichuraiana	Rw3G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	40, 82, 199
AluI	AGCT	3 cut(s)	40, 82, 199
Alw21I	GWGCWC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	162
Asp700I	GAANNNNTTC	2 cut(s)	135, 184
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	2 cut(s)	99, 177
Bme1390I	CCNGG	2 cut(s)	93, 143
BmrFI	CCNGG	2 cut(s)	93, 143
BmtI	GCTAGC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	46
BspOI	GCTAGC	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	229
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	91, 141
Cac8I	GCNNGC	1 cut(s)	100
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	3 cut(s)	40, 82, 199
CviKI_1	RGCY	3 cut(s)	40, 82, 199
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	1 cut(s)	75
FaiI	YATR	4 cut(s)	26, 45, 73, 215
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	99, 177
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	75
HinfI	GANTC	3 cut(s)	147, 173, 202
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	3 cut(s)	32, 107, 177
HpyAV	CCTTC	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	58, 87
Hsp92II	CATG	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	46
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	4 cut(s)	17, 106, 128, 155
MaeI	CTAG	2 cut(s)	99, 177
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	230
MroXI	GAANNNNTTC	2 cut(s)	135, 184
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	93, 143
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	143
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	46
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	75
NspI	RCATGY	1 cut(s)	75
PciI	ACATGT	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	135, 184
PfeI	GAWTC	2 cut(s)	173, 202
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PscI	ACATGT	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	30
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	93, 143
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	5 cut(s)	18, 42, 84, 201, 220
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	1 cut(s)	162
SspMI	CTAG	2 cut(s)	99, 177
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	91, 141
TaqI	TCGA	1 cut(s)	106
TaqII	GACCGA	1 cut(s)	9
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	173, 202
TspDTI	ATGAA	1 cut(s)	218
XapI	RAATTY	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	75
XmnI	GAANNNNTTC	2 cut(s)	135, 184
XspI	CTAG	2 cut(s)	99, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.