Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006224

Physical Location & Seq

Genomic Coordinates Forward (+)

6560667 .. 6567412

Gene Structure 6746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG083500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGCGGATTCTTATTGGAAAACTTCTGCAGAGAATTTCATACAAGCAGACTATTGGACGCCGTGCATTTTGCACCAAGAACATTGTTGACATTGGGCAGCCAACTCCTTCATCTCATCCACAGTTGATGAAAGAAGGGGAGATTACGCCCGGCATATCTTTGGAGGAATACATATTGAGAAGAAAAAGGTTGTTGGATGTGCTCCCAGAGAATGGCTTGGCCATCTTTGCAGCTGCGCCGGTGAAGATGATGAATGATGTTGTTCCTTATACGTATCGGCAAGATGCTGATTACTCGTACATTACTGGCTGCCAGCAACCTGGTGGCGTGGCGGTCTTGGGTCATGAATGCGGTTTTTGCATGTTCATGCCTGAACCAACAACTCAAATCCTCCCAGATTTTATGAGGAGATCGTCCAAGCTGTTCCACAATGTGCAGACGGCTGTACCAACATATATGGAATTGGATGCCTTTCAGAAAGCAGCTACCTCTGGAGAAGTGAAAGATGTTTCAGTTCTCACACATCAGTTACGGTTGATAAAGTCATCGGCAGAGCTCAAGTTAATGAGAGAGTCTGCAGCAATTGCTTGCCAGGCTCTCTTGCAGACAATGTTACATTCAAAGATACATCCATATGAGGGTATGCTTTCAGCTAAGATGGAATATGAATGCAAAATGAGGGGTGCCCAGAGAATGGCGTTCAACCCTGTGGTTGGTGGAGGGCCTAATGCTAGTGTAATACATTATTCTCGAAATGATCAGAAAATAAAGGAAGGAGATCTTGTCTTGATGGATGTTGGTTGCGAATTTCATGGTTATGTCAGTGATCTAACCCGCACCTGGCCACCCTGTGGAAGCTTTTCTTCAGCTCAAGAAGAGCTATATGATCTTATTCTGCAAACAAACAAGGAATGTGTGAAGCTTTGCAAACCTGGTGCTACCATTCGGCAAATACACAACTTTTCTGTTGACATGCTTCAAAAAGGACTCAAGGAGATTGGGATTCTGAAGGAGGACTCTAGACGTAGTTCCCACTATCAGTTGAGCCGTTCCTACCATCAGCTGAACCCTACTTCCATAGGTCACTATCTAGGAATGGATGTCCATGATTGTTCTAAGGTCAGCTACGACCATCCTTTGACGTCCGGTGTTTTGCGGATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003014 GO:0003094 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0030145 GO:0031647 GO:0032501 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050821 GO:0051604 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0071704 GO:0097205 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

388

Amino Acids

43.6

Weight (kDa)

8.53

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_N	PF05195	57 - 127	9.2e-18	Aminopeptidase P, N-terminal domain
Peptidase_M24	PF00557	188 - 377	4.1e-41	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09300 AT1G09300
fragaria_vesca	FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800
malus_domestica	MD04G1191800.v1.1
prunus_persica	Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1
pyrus_communis	pycom12g19110 pycom12g19120
rosa_chinensis	RchiOBHm_Chr3g0457511
rosa_laevigata	RLG00000025217
rosa_multiflora	Rmu_sc0007404.1_g000015 Rmu_sc0038466.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421810
rosa_rugosa	Rorug03G0020600 Rorug03G0020900
rosa_samantha	Rh3AG081400 Rh3BG083500 Rh3CG083700 Rh3DG085100
rosa_wichuraiana	Rw3G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1145
AccB1I	GGYRCC	1 cut(s)	683
AccB7I	CCANNNNNTGG	3 cut(s)	212, 694, 851
AciI	CCGC	5 cut(s)	4, 332, 351, 835, 1156
AcoI	YGGCCR	2 cut(s)	219, 842
AcsI	RAATTY	2 cut(s)	33, 806
AcuI	CTGAAG	2 cut(s)	849, 1028
AcyI	GRCGYC	2 cut(s)	58, 1142
AdeI	CACNNNGTG	2 cut(s)	433, 851
AfaI	GTAC	2 cut(s)	299, 447
AfiI	CCNNNNNNNGG	6 cut(s)	212, 638, 694, 713, 840, 851
AgsI	TTSAA	3 cut(s)	621, 703, 980
AjnI	CCWGG	4 cut(s)	319, 591, 839, 931
AloI	GAACNNNNNNTCC	2 cut(s)	1058, 1090
Alw21I	GWGCWC	2 cut(s)	204, 558
AoxI	GGCC	3 cut(s)	219, 722, 842
ApeKI	GCWGC	6 cut(s)	97, 230, 233, 309, 482, 578
ApoI	RAATTY	2 cut(s)	33, 806
Asp700I	GAANNNNTTC	1 cut(s)	859
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	722
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	688
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BalI	TGGCCA	2 cut(s)	221, 844
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	558
Bbv12I	GWGCWC	2 cut(s)	204, 558
BbvI	GCAGC	6 cut(s)	109, 220, 242, 296, 494, 590
BccI	CCATC	5 cut(s)	230, 652, 784, 1065, 1140
BceAI	ACGGC	3 cut(s)	45, 456, 1032
BciT130I	CCWGG	4 cut(s)	321, 593, 841, 933
BclI	TGATCA	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	150
BfaI	CTAG	3 cut(s)	732, 1020, 1091
BfmI	CTRYAG	2 cut(s)	26, 576
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	6 cut(s)	98, 231, 234, 310, 483, 579
BlsI	GCNGC	6 cut(s)	99, 232, 235, 311, 484, 580
Bme1390I	CCNGG	5 cut(s)	150, 321, 593, 841, 933
BmgT120I	GGNCC	1 cut(s)	722
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	5 cut(s)	150, 321, 593, 841, 933
BmsI	GCATC	2 cut(s)	274, 457
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	3 cut(s)	542, 855, 974
BpuMI	CCSGG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	58, 1142
BsaWI	WCCGGW	1 cut(s)	1145
BsaXI	ACNNNNNCTCC	2 cut(s)	768, 798
Bsc4I	CCNNNNNNNGG	6 cut(s)	212, 638, 694, 713, 840, 851
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	321, 593, 841, 933
BseGI	GGATG	8 cut(s)	115, 202, 472, 628, 799, 1105, 1132, 1164
BseLI	CCNNNNNNNGG	6 cut(s)	212, 638, 694, 713, 840, 851
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	6 cut(s)	109, 220, 242, 296, 494, 590
BsgI	GTGCAG	1 cut(s)	455
BshFI	GGCC	3 cut(s)	221, 724, 844
BshNI	GGYRCC	1 cut(s)	683
BsiHKAI	GWGCWC	2 cut(s)	204, 558
BsiSI	CCGG	3 cut(s)	150, 239, 1146
BslI	CCNNNNNNNGG	6 cut(s)	212, 638, 694, 713, 840, 851
BsmI	GAATGC	2 cut(s)	353, 674
BsnI	GGCC	3 cut(s)	221, 724, 844
Bsp1286I	GDGCHC	3 cut(s)	204, 558, 688
Bsp143I	GATC	5 cut(s)	410, 757, 778, 826, 886
BspACI	CCGC	5 cut(s)	4, 332, 351, 835, 1156
BspANI	GGCC	3 cut(s)	221, 724, 844
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	685
BspMAI	CTGCAG	2 cut(s)	30, 580
BspQI	GCTCTTC	1 cut(s)	870
BspT107I	GGYRCC	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	310
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	5 cut(s)	410, 757, 778, 826, 886
BssNI	GRCGYC	2 cut(s)	58, 1142
Bst2UI	CCWGG	4 cut(s)	321, 593, 841, 933
Bst4CI	ACNGT	2 cut(s)	123, 534
Bst6I	CTCTTC	1 cut(s)	870
BstACI	GRCGYC	2 cut(s)	58, 1142
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	314, 589
BstDEI	CTNAG	2 cut(s)	654, 1116
BstF5I	GGATG	8 cut(s)	115, 202, 472, 628, 799, 1105, 1132, 1164
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	5 cut(s)	413, 760, 781, 829, 889
BstMBI	GATC	5 cut(s)	410, 757, 778, 826, 886
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 357, 584, 593
BstNI	CCWGG	4 cut(s)	321, 593, 841, 933
BstNSI	RCATGY	2 cut(s)	364, 976
BstSCI	CCNGG	5 cut(s)	148, 319, 591, 839, 931
BstSFI	CTRYAG	2 cut(s)	26, 576
BstSLI	GKGCMC	1 cut(s)	688
BstSNI	TACGTA	1 cut(s)	273
BstV1I	GCAGC	6 cut(s)	109, 220, 242, 296, 494, 590
BstX2I	RGATCY	1 cut(s)	778
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	778
BsuRI	GGCC	3 cut(s)	221, 724, 844
BtsCI	GGATG	8 cut(s)	115, 202, 472, 628, 799, 1105, 1132, 1164
BtsIMutI	CAGTG	1 cut(s)	829
Cac8I	GCNNGC	2 cut(s)	314, 589
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	722
CseI	GACGC	1 cut(s)	66
CsiI	ACCWGGT	2 cut(s)	319, 931
Csp6I	GTAC	2 cut(s)	298, 446
CviAII	CATG	6 cut(s)	344, 361, 367, 812, 973, 1106
CviQI	GTAC	2 cut(s)	298, 446
DdeI	CTNAG	2 cut(s)	654, 1116
DpnI	GATC	5 cut(s)	412, 759, 780, 828, 888
DpnII	GATC	5 cut(s)	410, 757, 778, 826, 886
DraIII	CACNNNGTG	2 cut(s)	433, 851
EaeI	YGGCCR	2 cut(s)	219, 842
Eam1104I	CTCTTC	1 cut(s)	870
EarI	CTCTTC	1 cut(s)	870
Ecl136II	GAGCTC	1 cut(s)	556
Eco105I	TACGTA	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	849, 1028
EcoICRI	GAGCTC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRII	CCWGG	4 cut(s)	319, 591, 839, 931
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	6 cut(s)	347, 364, 370, 815, 976, 1109
FalI	AAGNNNNNCTT	4 cut(s)	765, 797, 847, 879
FatI	CATG	6 cut(s)	343, 360, 366, 811, 972, 1105
FauI	CCCGC	1 cut(s)	842
FauNDI	CATATG	1 cut(s)	634
FbaI	TGATCA	1 cut(s)	757
Fnu4HI	GCNGC	6 cut(s)	98, 231, 234, 310, 483, 579
FokI	GGATG	7 cut(s)	102, 209, 479, 615, 806, 1112, 1119
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	6 cut(s)	98, 231, 234, 310, 483, 579
FspBI	CTAG	3 cut(s)	732, 1020, 1091
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	6 cut(s)	98, 231, 234, 310, 483, 579
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	3 cut(s)	221, 724, 844
HapII	CCGG	3 cut(s)	150, 239, 1146
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	2 cut(s)	58, 1142
Hin1II	CATG	6 cut(s)	347, 364, 370, 815, 976, 1109
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	2 cut(s)	88, 970
HindII	GTYRAC	2 cut(s)	88, 970
HindIII	AAGCTT	2 cut(s)	856, 920
HinfI	GANTC	5 cut(s)	7, 572, 987, 1003, 1016
HpaII	CCGG	3 cut(s)	150, 239, 1146
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	88, 970
Hpy188I	TCNGA	3 cut(s)	477, 762, 1008
Hpy188III	TCNNGA	6 cut(s)	344, 492, 750, 787, 872, 1020
Hpy8I	GTNNAC	2 cut(s)	88, 970
HpyAV	CCTTC	4 cut(s)	117, 128, 767, 1003
HpyCH4III	ACNGT	2 cut(s)	123, 534
HpyCH4IV	ACGT	3 cut(s)	272, 1024, 1142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 357, 584, 593
HpyF3I	CTNAG	2 cut(s)	654, 1116
HpySE526I	ACGT	3 cut(s)	272, 1024, 1142
Hsp92I	GRCGYC	2 cut(s)	58, 1142
Hsp92II	CATG	6 cut(s)	347, 364, 370, 815, 976, 1109
HspAI	GCGC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	5 cut(s)	410, 757, 778, 826, 886
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	6 cut(s)	109, 220, 242, 296, 494, 590
LweI	GCATC	2 cut(s)	274, 457
MabI	ACCWGGT	2 cut(s)	319, 931
MaeI	CTAG	3 cut(s)	732, 1020, 1091
MaeII	ACGT	3 cut(s)	272, 1024, 1142
MaeIII	GTNAC	3 cut(s)	528, 612, 1082
MalI	GATC	5 cut(s)	412, 759, 780, 828, 888
MboI	GATC	5 cut(s)	410, 757, 778, 826, 886
MboII	GAAGA	4 cut(s)	192, 256, 855, 887
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	3 cut(s)	204, 558, 688
MlsI	TGGCCA	2 cut(s)	221, 844
MluCI	AATT	4 cut(s)	33, 461, 582, 806
MluNI	TGGCCA	2 cut(s)	221, 844
MlyI	GAGTC	3 cut(s)	581, 981, 1010
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	8 cut(s)	157, 399, 401, 499, 631, 672, 713, 1006
Mox20I	TGGCCA	2 cut(s)	221, 844
MroXI	GAANNNNTTC	1 cut(s)	859
MscI	TGGCCA	2 cut(s)	221, 844
MseI	TTAA	1 cut(s)	563
MslI	CAYNNNNRTG	3 cut(s)	365, 633, 816
Msp20I	TGGCCA	2 cut(s)	221, 844
MspA1I	CMGCKG	2 cut(s)	233, 1063
MspI	CCGG	3 cut(s)	150, 239, 1146
MspR9I	CCNGG	5 cut(s)	150, 321, 593, 841, 933
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	2 cut(s)	353, 674
MvaI	CCWGG	4 cut(s)	321, 593, 841, 933
MwoI	GCNNNNNNNGC	4 cut(s)	227, 357, 584, 593
NciI	CCSGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	5 cut(s)	410, 757, 778, 826, 886
NlaIII	CATG	6 cut(s)	347, 364, 370, 815, 976, 1109
NlaIV	GGNNCC	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	1082
NspI	RCATGY	2 cut(s)	364, 976
PagI	TCATGA	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	870
PctI	GAATGC	2 cut(s)	353, 674
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	2 cut(s)	7, 1003
PflMI	CCANNNNNTGG	3 cut(s)	212, 694, 851
PkrI	GCNGC	6 cut(s)	99, 232, 235, 311, 484, 580
PleI	GAGTC	3 cut(s)	580, 981, 1010
PpsI	GAGTC	3 cut(s)	580, 981, 1010
Ppu21I	YACGTR	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	558
Psp6I	CCWGG	4 cut(s)	319, 591, 839, 931
PspGI	CCWGG	4 cut(s)	319, 591, 839, 931
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	1 cut(s)	722
PstI	CTGCAG	2 cut(s)	30, 580
PsuI	RGATCY	1 cut(s)	778
PvuII	CAGCTG	2 cut(s)	233, 1063
RsaI	GTAC	2 cut(s)	299, 447
RsaNI	GTAC	2 cut(s)	298, 446
RseI	CAYNNNNRTG	3 cut(s)	365, 633, 816
SacI	GAGCTC	1 cut(s)	558
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	1 cut(s)	563
SatI	GCNGC	6 cut(s)	98, 231, 234, 310, 483, 579
Sau3AI	GATC	5 cut(s)	410, 757, 778, 826, 886
Sau96I	GGNCC	1 cut(s)	722
SchI	GAGTC	3 cut(s)	581, 981, 1010
ScrFI	CCNGG	5 cut(s)	150, 321, 593, 841, 933
SduI	GDGCHC	3 cut(s)	204, 558, 688
SexAI	ACCWGGT	2 cut(s)	319, 931
SfaNI	GCATC	2 cut(s)	274, 457
SfcI	CTRYAG	2 cut(s)	26, 576
SgrAI	CRCCGGYG	1 cut(s)	238
SmiMI	CAYNNNNRTG	3 cut(s)	365, 633, 816
SmlI	CTYRAG	3 cut(s)	557, 870, 989
SmoI	CTYRAG	3 cut(s)	557, 870, 989
SnaBI	TACGTA	1 cut(s)	273
Sse9I	AATT	4 cut(s)	33, 461, 582, 806
SsiI	CCGC	5 cut(s)	4, 332, 351, 835, 1156
SspMI	CTAG	3 cut(s)	732, 1020, 1091
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	5 cut(s)	148, 319, 591, 839, 931
TaaI	ACNGT	2 cut(s)	123, 534
TaiI	ACGT	3 cut(s)	275, 1027, 1145
TaqI	TCGA	1 cut(s)	751
TasI	AATT	4 cut(s)	33, 461, 582, 806
TfiI	GAWTC	2 cut(s)	7, 1003
Tru1I	TTAA	1 cut(s)	563
Tru9I	TTAA	1 cut(s)	563
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	1082
TseI	GCWGC	6 cut(s)	97, 230, 233, 309, 482, 578
Tsp45I	GTSAC	1 cut(s)	1082
TspDTI	ATGAA	8 cut(s)	27, 99, 143, 266, 355, 360, 681, 800
TspRI	CASTG	1 cut(s)	829
Van91I	CCANNNNNTGG	3 cut(s)	212, 694, 851
XapI	RAATTY	2 cut(s)	33, 806
XbaI	TCTAGA	1 cut(s)	1019
XceI	RCATGY	2 cut(s)	364, 976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	3 cut(s)	732, 1020, 1091
ZraI	GACGTC	1 cut(s)	1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.