Rw3G006980

Xaa-Pro aminopeptidase 3

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
6522947 .. 6528906
5960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G006980.1

Sequence Viewer

Length: 1476 bp
ATGCGGATTCTTATGGGAAAACTTCTGCAGAGAATTTCATACAAGCAGACTATTGGACGCCGTGCATTTTGCACCAAGAACATTGTTGACATTGGGCAGCCAACTCCTTCATCTCATCCACAGTTGATGAAAGAAGGGGAGATTACGCCCGGCATATCTTTGGAGGAGTACATATTGAGAAGAAAAAGGTTGTTGGATGTGCTCCCAGAGAATGGCTTGGCCATCTTTGCAGCTGCGCCGGTGAAGATGATGAATGATGTTGTTCCTTATACGTATCGGCAAGATGCTGATTACTCGTACATTACTGGCTGCCAGCAACCTGGTGGCGTGGCGGTCTTGGGTCATGAGTGCGGTTTTTGCATGTTCATGCCTGAACCAACAACTCAAGATGTGACTTGGCAAGGACAAACTGCAGGAATTAATGCAGCACTAGAAGTATTTAAGGCTGATAAAGCATATCCAATGAGCAAATTACGGGAGATCCTCCCAGATTTTATGAGGAGATCGTCCAAGCTGTTCCACAATGTGCAGACGGCTGTACCAACATATATGGAATTGGATGCCTTTCAGAAAGCAGCTACCTCTGGAGAAGTGAAAGATGTTTCAGTTCTCACACATCAGTTACGGTTGATAAAGTCATCGGCAGAGCTCAAGTTAATGAGAGAGTCTGCAGCAATTGCTTGCCAGGCTCTCTTGCAGACAATGTTACATTCAAAGATACATCCTTATGAGGGTATGCTTTCAGCTAAGATGGAATATGAATGCAAAATGAGGGGTGCCCAGAGAATGGCGTTCAACCCTGTGGTTGGTGGAGGGCCTAATGCTAGTGTAATACATTATTCTCGAAATGATCAGAAAATAAAGGAAGGAGATCTTGTCTTGATGGATGTTGGTTGTGAATTTCATGGTTATGTCAGTGATCTAACCCGCACCTGGCCACCCTGTGGAAGCTTTTCTTCAGCTCAAGAAGAGCTATATGATCTTATTCTGCAAACAAACAAGGAATGCGTGAAGCTTTGCAAACCTGGTGCTACCATTCGGCAAATACACAACTTTTCTGTTGACATGCTTCAAAAAGGACTCAAGGAGATTGGGATTCTGAAGGAGGACTCTAGACGTAGTTCCCACTATCAGTTGAGCCGTTCCTACCATCAGCTGAACCCTACTTCCATAGGTCACTATCTAGGAATGGATGTCCATGATTGTTCTAAGGTCAGCTACGACCATCCTTTGACGTCCGGTGTTGTGATAACAATTGAACCAGGAATCTACATCCCATTGTTCTCTAATATTCCTGAGAGGTATCAAGGCATCGGGATAAGGATTGAAGATGAGGTCCTTATTACAGACATGGGTTGTGAGGTCCTAACTGGGTCAATTCCAAAAGAAGTTAAGCACATTGAATCCTTGCTAAACAACTTTCATCATGGAACTGTAATGGAGAGCCACAGTAATCAGATGGTTTCATTCAGTTGA

Protein Analysis

491

Amino Acids

55.0

Weight (kDa)

6.81

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_N PF05195 57 - 172 6.1e-31 Aminopeptidase P, N-terminal domain
Peptidase_M24 PF00557 219 - 450 6.4e-53 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1238
AccB1I GGYRCC 1 cut(s) 776
AccB7I CCANNNNNTGG 3 cut(s) 212, 787, 944
AciI CCGC 4 cut(s) 4, 332, 351, 928
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 2 cut(s) 219, 935
AcsI RAATTY 2 cut(s) 33, 899
AcuI CTGAAG 2 cut(s) 942, 1121
AcyI GRCGYC 2 cut(s) 58, 1235
AdeI CACNNNGTG 2 cut(s) 526, 944
AfaI GTAC 3 cut(s) 170, 299, 540
AfiI CCNNNNNNNGG 6 cut(s) 212, 731, 787, 806, 933, 944
AgsI TTSAA 6 cut(s) 714, 796, 1073, 1259, 1328, 1403
AjnI CCWGG 5 cut(s) 319, 684, 932, 1024, 1261
AloI GAACNNNNNNTCC 2 cut(s) 1151, 1183
Alw21I GWGCWC 2 cut(s) 204, 651
AlwI GGATC 1 cut(s) 475
AoxI GGCC 3 cut(s) 219, 815, 935
ApeKI GCWGC 7 cut(s) 97, 230, 233, 309, 425, 575, 671
ApoI RAATTY 2 cut(s) 33, 899
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 952
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 3 cut(s) 815, 1336, 1363
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 2 cut(s) 1336, 1363
BaeGI GKGCMC 1 cut(s) 781
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BalI TGGCCA 2 cut(s) 221, 937
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 204, 651
BbvI GCAGC 7 cut(s) 109, 220, 242, 296, 437, 587, 683
BccI CCATC 6 cut(s) 230, 745, 877, 1158, 1233, 1453
BceAI ACGGC 3 cut(s) 45, 549, 1125
BciT130I CCWGG 5 cut(s) 321, 686, 934, 1026, 1263
BclI TGATCA 1 cut(s) 850
BcnI CCSGG 1 cut(s) 150
BfaI CTAG 4 cut(s) 431, 825, 1113, 1184
BfmI CTRYAG 3 cut(s) 26, 411, 669
BglII AGATCT 1 cut(s) 871
BisI GCNGC 7 cut(s) 98, 231, 234, 310, 426, 576, 672
BlsI GCNGC 7 cut(s) 99, 232, 235, 311, 427, 577, 673
Bme1390I CCNGG 6 cut(s) 150, 321, 686, 934, 1026, 1263
Bme18I GGWCC 2 cut(s) 1336, 1363
BmgT120I GGNCC 3 cut(s) 815, 1336, 1363
BmiI GGNNCC 1 cut(s) 778
BmrFI CCNGG 6 cut(s) 150, 321, 686, 934, 1026, 1263
BmrI ACTGGG 1 cut(s) 1380
BmsI GCATC 3 cut(s) 274, 550, 1320
BmuI ACTGGG 1 cut(s) 1380
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 4 cut(s) 369, 635, 948, 1067
BpuMI CCSGG 1 cut(s) 150
BsaAI YACGTR 1 cut(s) 273
BsaHI GRCGYC 2 cut(s) 58, 1235
BsaWI WCCGGW 1 cut(s) 1238
BsaXI ACNNNNNCTCC 2 cut(s) 861, 891
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 731, 787, 806, 933, 944
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 310, 1375
BseBI CCWGG 5 cut(s) 321, 686, 934, 1026, 1263
BseGI GGATG 8 cut(s) 115, 202, 565, 721, 892, 1198, 1225, 1272
BseLI CCNNNNNNNGG 6 cut(s) 212, 731, 787, 806, 933, 944
BseMII CTCAG 1 cut(s) 1287
BseNI ACTGG 2 cut(s) 310, 1375
BseRI GAGGAG 2 cut(s) 179, 514
BseSI GKGCMC 1 cut(s) 781
BseXI GCAGC 7 cut(s) 109, 220, 242, 296, 437, 587, 683
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 3 cut(s) 221, 817, 937
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 2 cut(s) 204, 651
BsiSI CCGG 3 cut(s) 150, 239, 1239
BslI CCNNNNNNNGG 6 cut(s) 212, 731, 787, 806, 933, 944
BsmI GAATGC 2 cut(s) 767, 1010
BsnI GGCC 3 cut(s) 221, 817, 937
Bsp1286I GDGCHC 3 cut(s) 204, 651, 781
Bsp143I GATC 6 cut(s) 480, 503, 850, 871, 919, 979
BspACI CCGC 4 cut(s) 4, 332, 351, 928
BspANI GGCC 3 cut(s) 221, 817, 937
BspCNI CTCAG 1 cut(s) 1288
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 778
BspMAI CTGCAG 3 cut(s) 30, 415, 673
BspPI GGATC 1 cut(s) 475
BspQI GCTCTTC 1 cut(s) 963
BspT107I GGYRCC 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 2 cut(s) 310, 1375
BssAI RCCGGY 1 cut(s) 238
BssMI GATC 6 cut(s) 480, 503, 850, 871, 919, 979
BssNI GRCGYC 2 cut(s) 58, 1235
Bst2UI CCWGG 5 cut(s) 321, 686, 934, 1026, 1263
Bst4CI ACNGT 4 cut(s) 123, 627, 1435, 1451
Bst6I CTCTTC 1 cut(s) 963
BstACI GRCGYC 2 cut(s) 58, 1235
BstAPI GCANNNNNTGC 1 cut(s) 677
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 314, 682
BstDEI CTNAG 3 cut(s) 747, 1209, 1296
BstF5I GGATG 8 cut(s) 115, 202, 565, 721, 892, 1198, 1225, 1272
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 6 cut(s) 483, 506, 853, 874, 922, 982
BstMBI GATC 6 cut(s) 480, 503, 850, 871, 919, 979
BstMWI GCNNNNNNNGC 5 cut(s) 227, 357, 452, 677, 686
BstNI CCWGG 5 cut(s) 321, 686, 934, 1026, 1263
BstNSI RCATGY 2 cut(s) 364, 1069
BstSCI CCNGG 6 cut(s) 148, 319, 684, 932, 1024, 1261
BstSFI CTRYAG 3 cut(s) 26, 411, 669
BstSLI GKGCMC 1 cut(s) 781
BstSNI TACGTA 1 cut(s) 273
BstV1I GCAGC 7 cut(s) 109, 220, 242, 296, 437, 587, 683
BstX2I RGATCY 2 cut(s) 480, 871
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 2 cut(s) 480, 871
BsuRI GGCC 3 cut(s) 221, 817, 937
BtsCI GGATG 8 cut(s) 115, 202, 565, 721, 892, 1198, 1225, 1272
BtsIMutI CAGTG 1 cut(s) 922
Cac8I GCNNGC 2 cut(s) 314, 682
CciI TCATGA 1 cut(s) 343
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 3 cut(s) 815, 1336, 1363
CseI GACGC 1 cut(s) 66
CsiI ACCWGGT 2 cut(s) 319, 1024
Csp6I GTAC 3 cut(s) 169, 298, 539
CviAII CATG 8 cut(s) 344, 361, 367, 905, 1066, 1199, 1351, 1427
CviQI GTAC 3 cut(s) 169, 298, 539
DdeI CTNAG 3 cut(s) 747, 1209, 1296
DpnI GATC 6 cut(s) 482, 505, 852, 873, 921, 981
DpnII GATC 6 cut(s) 480, 503, 850, 871, 919, 979
DraIII CACNNNGTG 2 cut(s) 526, 944
EaeI YGGCCR 2 cut(s) 219, 935
Eam1104I CTCTTC 1 cut(s) 963
EarI CTCTTC 1 cut(s) 963
Ecl136II GAGCTC 1 cut(s) 649
Eco105I TACGTA 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 651
Eco47I GGWCC 2 cut(s) 1336, 1363
Eco53kI GAGCTC 1 cut(s) 649
Eco57I CTGAAG 2 cut(s) 942, 1121
EcoICRI GAGCTC 1 cut(s) 649
EcoO109I RGGNCCY 3 cut(s) 815, 1336, 1363
EcoRII CCWGG 5 cut(s) 319, 684, 932, 1024, 1261
EcoT38I GRGCYC 1 cut(s) 651
FaeI CATG 8 cut(s) 347, 364, 370, 908, 1069, 1202, 1354, 1430
FalI AAGNNNNNCTT 4 cut(s) 858, 890, 940, 972
FatI CATG 8 cut(s) 343, 360, 366, 904, 1065, 1198, 1350, 1426
FauI CCCGC 1 cut(s) 935
FbaI TGATCA 1 cut(s) 850
Fnu4HI GCNGC 7 cut(s) 98, 231, 234, 310, 426, 576, 672
FokI GGATG 8 cut(s) 102, 209, 572, 708, 899, 1205, 1212, 1259
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 7 cut(s) 98, 231, 234, 310, 426, 576, 672
FspBI CTAG 4 cut(s) 431, 825, 1113, 1184
GlaI GCGC 1 cut(s) 237
GluI GCNGC 7 cut(s) 98, 231, 234, 310, 426, 576, 672
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 3 cut(s) 221, 817, 937
HapII CCGG 3 cut(s) 150, 239, 1239
HgaI GACGC 1 cut(s) 66
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 2 cut(s) 58, 1235
Hin1II CATG 8 cut(s) 347, 364, 370, 908, 1069, 1202, 1354, 1430
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 2 cut(s) 88, 1063
HindII GTYRAC 2 cut(s) 88, 1063
HindIII AAGCTT 2 cut(s) 949, 1013
HinfI GANTC 7 cut(s) 7, 665, 1080, 1096, 1109, 1266, 1403
HpaII CCGG 3 cut(s) 150, 239, 1239
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 88, 1063
Hpy188I TCNGA 4 cut(s) 570, 855, 1101, 1458
Hpy188III TCNNGA 9 cut(s) 344, 386, 585, 843, 880, 965, 1113, 1295, 1315
Hpy8I GTNNAC 2 cut(s) 88, 1063
HpyAV CCTTC 4 cut(s) 117, 128, 860, 1096
HpyCH4III ACNGT 4 cut(s) 123, 627, 1435, 1451
HpyCH4IV ACGT 3 cut(s) 272, 1117, 1235
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 357, 452, 677, 686
HpyF3I CTNAG 3 cut(s) 747, 1209, 1296
HpySE526I ACGT 3 cut(s) 272, 1117, 1235
Hsp92I GRCGYC 2 cut(s) 58, 1235
Hsp92II CATG 8 cut(s) 347, 364, 370, 908, 1069, 1202, 1354, 1430
HspAI GCGC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 850
Kzo9I GATC 6 cut(s) 480, 503, 850, 871, 919, 979
LguI GCTCTTC 1 cut(s) 963
LmnI GCTCC 1 cut(s) 207
Lsp1109I GCAGC 7 cut(s) 109, 220, 242, 296, 437, 587, 683
LweI GCATC 3 cut(s) 274, 550, 1320
MabI ACCWGGT 2 cut(s) 319, 1024
MaeI CTAG 4 cut(s) 431, 825, 1113, 1184
MaeII ACGT 3 cut(s) 272, 1117, 1235
MaeIII GTNAC 4 cut(s) 391, 621, 705, 1175
MalI GATC 6 cut(s) 482, 505, 852, 873, 921, 981
MboI GATC 6 cut(s) 480, 503, 850, 871, 919, 979
MboII GAAGA 5 cut(s) 192, 256, 948, 980, 1340
MfeI CAATTG 2 cut(s) 675, 1254
MflI RGATCY 2 cut(s) 480, 871
MhlI GDGCHC 3 cut(s) 204, 651, 781
MlsI TGGCCA 2 cut(s) 221, 937
MluCI AATT 8 cut(s) 33, 417, 470, 554, 675, 899, 1254, 1377
MluNI TGGCCA 2 cut(s) 221, 937
MlyI GAGTC 3 cut(s) 674, 1074, 1103
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 2 cut(s) 221, 937
MroXI GAANNNNTTC 1 cut(s) 952
MscI TGGCCA 2 cut(s) 221, 937
MseI TTAA 4 cut(s) 420, 441, 656, 1392
MslI CAYNNNNRTG 3 cut(s) 365, 726, 909
Msp20I TGGCCA 2 cut(s) 221, 937
MspA1I CMGCKG 2 cut(s) 233, 1156
MspI CCGG 3 cut(s) 150, 239, 1239
MspR9I CCNGG 6 cut(s) 150, 321, 686, 934, 1026, 1263
MunI CAATTG 2 cut(s) 675, 1254
Mva1269I GAATGC 2 cut(s) 767, 1010
MvaI CCWGG 5 cut(s) 321, 686, 934, 1026, 1263
MwoI GCNNNNNNNGC 5 cut(s) 227, 357, 452, 677, 686
NciI CCSGG 1 cut(s) 150
NdeII GATC 6 cut(s) 480, 503, 850, 871, 919, 979
NlaIII CATG 8 cut(s) 347, 364, 370, 908, 1069, 1202, 1354, 1430
NlaIV GGNNCC 1 cut(s) 778
NmuCI GTSAC 2 cut(s) 391, 1175
NspI RCATGY 2 cut(s) 364, 1069
PagI TCATGA 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 963
PctI GAATGC 2 cut(s) 767, 1010
PdmI GAANNNNTTC 1 cut(s) 952
PfeI GAWTC 4 cut(s) 7, 1096, 1266, 1403
PflMI CCANNNNNTGG 3 cut(s) 212, 787, 944
PkrI GCNGC 7 cut(s) 99, 232, 235, 311, 427, 577, 673
PleI GAGTC 3 cut(s) 673, 1074, 1103
PpsI GAGTC 3 cut(s) 673, 1074, 1103
Ppu21I YACGTR 1 cut(s) 273
PpuMI RGGWCCY 2 cut(s) 1336, 1363
PshBI ATTAAT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 651
Psp5II RGGWCCY 2 cut(s) 1336, 1363
Psp6I CCWGG 5 cut(s) 319, 684, 932, 1024, 1261
PspGI CCWGG 5 cut(s) 319, 684, 932, 1024, 1261
PspN4I GGNNCC 1 cut(s) 778
PspPI GGNCC 3 cut(s) 815, 1336, 1363
PspPPI RGGWCCY 2 cut(s) 1336, 1363
PstI CTGCAG 3 cut(s) 30, 415, 673
PsuI RGATCY 2 cut(s) 480, 871
PvuII CAGCTG 2 cut(s) 233, 1156
RsaI GTAC 3 cut(s) 170, 299, 540
RsaNI GTAC 3 cut(s) 169, 298, 539
RseI CAYNNNNRTG 3 cut(s) 365, 726, 909
SacI GAGCTC 1 cut(s) 651
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 4 cut(s) 420, 441, 656, 1392
SatI GCNGC 7 cut(s) 98, 231, 234, 310, 426, 576, 672
Sau3AI GATC 6 cut(s) 480, 503, 850, 871, 919, 979
Sau96I GGNCC 3 cut(s) 815, 1336, 1363
SchI GAGTC 3 cut(s) 674, 1074, 1103
ScrFI CCNGG 6 cut(s) 150, 321, 686, 934, 1026, 1263
SduI GDGCHC 3 cut(s) 204, 651, 781
SexAI ACCWGGT 2 cut(s) 319, 1024
SfaNI GCATC 3 cut(s) 274, 550, 1320
SfcI CTRYAG 3 cut(s) 26, 411, 669
SgrAI CRCCGGYG 1 cut(s) 238
SinI GGWCC 2 cut(s) 1336, 1363
SmiMI CAYNNNNRTG 3 cut(s) 365, 726, 909
SmlI CTYRAG 4 cut(s) 384, 650, 963, 1082
SmoI CTYRAG 4 cut(s) 384, 650, 963, 1082
SnaBI TACGTA 1 cut(s) 273
Sse9I AATT 8 cut(s) 33, 417, 470, 554, 675, 899, 1254, 1377
SsiI CCGC 4 cut(s) 4, 332, 351, 928
SspI AATATT 1 cut(s) 1291
SspMI CTAG 4 cut(s) 431, 825, 1113, 1184
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 6 cut(s) 148, 319, 684, 932, 1024, 1261
TaaI ACNGT 4 cut(s) 123, 627, 1435, 1451
TaiI ACGT 3 cut(s) 275, 1120, 1238
TaqI TCGA 1 cut(s) 844
TasI AATT 8 cut(s) 33, 417, 470, 554, 675, 899, 1254, 1377
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 4 cut(s) 7, 1096, 1266, 1403
Tru1I TTAA 4 cut(s) 420, 441, 656, 1392
Tru9I TTAA 4 cut(s) 420, 441, 656, 1392
TscAI CASTG 1 cut(s) 922
TseFI GTSAC 2 cut(s) 391, 1175
TseI GCWGC 7 cut(s) 97, 230, 233, 309, 425, 575, 671
Tsp45I GTSAC 2 cut(s) 391, 1175
TspDTI ATGAA 9 cut(s) 27, 99, 143, 266, 355, 774, 893, 1412, 1455
TspRI CASTG 1 cut(s) 922
Van91I CCANNNNNTGG 3 cut(s) 212, 787, 944
VpaK11BI GGWCC 2 cut(s) 1336, 1363
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 2 cut(s) 33, 899
XbaI TCTAGA 1 cut(s) 1112
XceI RCATGY 2 cut(s) 364, 1069
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 952
XspI CTAG 4 cut(s) 431, 825, 1113, 1184
ZraI GACGTC 1 cut(s) 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.