Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006224

Physical Location & Seq

Genomic Coordinates Reverse (-)

28114053 .. 28115619

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1191800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGAGCTCAAGTTAATGAAAGAGTCTGCGTCTGTTGCTTGGGAAATGGGGATTGTTGAGAATGAGTATCTTGTCTTGGAGGATGTTGGTTGCGAGCTTCGTGGCTATGTCAGTGATCTTACTCGCATCTGGCCATCCTATGGCAGCTTCTCGTCAGCTCAAGAAGAGCTCTACGATCTTATTCTGCAAACAAACAAGATATCTGTGGAGCTTTGTGAACCTGGTGATAACATTCGAGAAATACACAACTTTTCAGTTGAAATGCTTCACAAAGGACTCAAGGAGATCGGAATTCTGAAGGACTCTAGAAGCAATTCCTACCATCAGATGAATCCAACTTCCATAGGTTTCTCTGTTCATTCCTTGACAAAAATTTCAGTTTTTTGTTTTTCCAATATAATACGGCATCAATCAGACTATGTTCTTCATCTGTCTACGTCTGACTTGGCTTATCAAGATGTCAAGTACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003014 GO:0003094 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0030145 GO:0031647 GO:0032501 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050821 GO:0051604 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0071704 GO:0097205 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMP_N Peptidase_M24

Protein Analysis

159

Amino Acids

18.08

Weight (kDa)

5.04

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	20 - 105	1.5e-12	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09300 AT1G09300
fragaria_vesca	FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800 FvH4_6g07800
malus_domestica	MD04G1191800.v1.1
prunus_persica	Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1 Prupe.6G310400_v2.0.a1
pyrus_communis	pycom12g19110 pycom12g19120
rosa_chinensis	RchiOBHm_Chr3g0457511
rosa_laevigata	RLG00000025217
rosa_multiflora	Rmu_sc0007404.1_g000015 Rmu_sc0038466.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421810
rosa_rugosa	Rorug03G0020600 Rorug03G0020900
rosa_samantha	Rh3AG081400 Rh3BG083500 Rh3CG083700 Rh3DG085100
rosa_wichuraiana	Rw3G006980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	437
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	294, 375
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	6 cut(s)	10, 100, 150, 161, 172, 214
AluI	AGCT	6 cut(s)	10, 100, 150, 161, 172, 214
Alw21I	GWGCWC	2 cut(s)	12, 174
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	2 cut(s)	294, 375
Asp700I	GAANNNNTTC	2 cut(s)	267, 316
AsuHPI	GGTGA	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	12, 174
Bbv12I	GWGCWC	2 cut(s)	12, 174
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	145, 333
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	2 cut(s)	138, 418
BpuEI	CTTGAG	2 cut(s)	147, 266
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	91, 137
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	159
BshFI	GGCC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	12, 174
BslI	CCNNNNNNNGG	1 cut(s)	143
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	12, 174
Bsp143I	GATC	3 cut(s)	118, 178, 288
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	162
BssMI	GATC	3 cut(s)	118, 178, 288
Bst2UI	CCWGG	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	91, 137
BstKTI	GATC	3 cut(s)	121, 181, 291
BstMBI	GATC	3 cut(s)	118, 178, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	91, 137
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	98
CseI	GACGC	1 cut(s)	21
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	469
CviJI	RGCY	9 cut(s)	10, 100, 108, 136, 150, 161, 172, 214, 452
CviKI_1	RGCY	9 cut(s)	10, 100, 108, 136, 150, 161, 172, 214, 452
CviQI	GTAC	1 cut(s)	469
DpnI	GATC	3 cut(s)	120, 180, 290
DpnII	GATC	3 cut(s)	118, 178, 288
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	10, 172
Eco24I	GRGCYC	2 cut(s)	12, 174
Eco32I	GATATC	1 cut(s)	204
Eco53kI	GAGCTC	2 cut(s)	10, 172
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	2 cut(s)	10, 172
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	12, 174
FaiI	YATR	5 cut(s)	111, 144, 347, 401, 423
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	2 cut(s)	98, 124
FriOI	GRGCYC	2 cut(s)	12, 174
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	136
HgaI	GACGC	1 cut(s)	21
HinfI	GANTC	4 cut(s)	26, 279, 305, 334
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	221, 438
Hpy188I	TCNGA	5 cut(s)	293, 300, 330, 418, 445
Hpy188III	TCNNGA	4 cut(s)	164, 239, 309, 458
Hpy8I	GTNNAC	2 cut(s)	221, 438
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	440
Kzo9I	GATC	3 cut(s)	118, 178, 288
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	7, 211
LpnPI	CCDG	3 cut(s)	118, 210, 237
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	2 cut(s)	138, 418
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	440
MalI	GATC	3 cut(s)	120, 180, 290
MboI	GATC	3 cut(s)	118, 178, 288
MboII	GAAGA	2 cut(s)	179, 419
MhlI	GDGCHC	2 cut(s)	12, 174
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	3 cut(s)	294, 316, 375
MluNI	TGGCCA	1 cut(s)	136
MlyI	GAGTC	3 cut(s)	35, 273, 299
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	1 cut(s)	76
Mox20I	TGGCCA	1 cut(s)	136
MroXI	GAANNNNTTC	2 cut(s)	267, 316
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	3 cut(s)	118, 178, 288
PciSI	GCTCTTC	1 cut(s)	162
PdmI	GAANNNNTTC	2 cut(s)	267, 316
PfeI	GAWTC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	149
PleI	GAGTC	3 cut(s)	34, 273, 299
PpsI	GAGTC	3 cut(s)	34, 273, 299
Psp124BI	GAGCTC	2 cut(s)	12, 174
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SacI	GAGCTC	2 cut(s)	12, 174
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	3 cut(s)	118, 178, 288
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	3 cut(s)	35, 273, 299
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	12, 174
SetI	ASST	9 cut(s)	12, 102, 152, 163, 174, 216, 226, 352, 443
SexAI	ACCWGGT	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	138, 418
SmlI	CTYRAG	3 cut(s)	11, 162, 281
SmoI	CTYRAG	3 cut(s)	11, 162, 281
Sse9I	AATT	3 cut(s)	294, 316, 375
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	309
SstI	GAGCTC	2 cut(s)	12, 174
StyD4I	CCNGG	1 cut(s)	223
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	294, 316, 375
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	4 cut(s)	35, 347, 350, 419
TspRI	CASTG	1 cut(s)	121
Van91I	CCANNNNNTGG	1 cut(s)	143
XapI	RAATTY	2 cut(s)	294, 375
XbaI	TCTAGA	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	437
XmnI	GAANNNNTTC	2 cut(s)	267, 316
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.